libSBML C++ API  5.18.0
convertFbcToCobra.cpp

Example of converting an SBML Level 3 model using the Flux Balance Constraints package to a COBRA-style SBML Level 2 model.

/**
* @file convertFbcToCobra.cpp
* @brief Convert COBRA L2 to L3 with FBC
* @author Frank T. Bergmann
*
* <!--------------------------------------------------------------------------
* This sample program is distributed under a different license than the rest
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* Copyright (c) 2013-2018 by the California Institute of Technology
* (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
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*/
#include <iostream>
#include <sbml/SBMLTypes.h>
using namespace std;
int
main (int argc, char* argv[])
{
if (argc != 3)
{
cout << endl << "Usage: convertFbcToCobra input-filename output-filename"
<< endl << endl;
return 2;
}
SBMLDocument *d = readSBML(argv[1]);
{
}
else
{
/* create a new conversion properties structure */
/* add an option that we want to strip a given package */
props.addOption("convert fbc to cobra", true,
"Convert FBC model to Cobra model");
/* perform the conversion */
int result = d->convert(props);
{
cout<< "conversion failed ... " << endl;
return 3;
}
writeSBML(d, argv[2]);
}
return 0;
}