stripPackage.cpp

Strips the given SBML Level 3 package from the given SBML file.

/**
 * @file    stripPackage.cpp
 * @brief   Strips the given package from the given SBML file.
 * @author  Frank T. Bergmann
 *
 * <!--------------------------------------------------------------------------
 * This sample program is distributed under a different license than the rest
 * of libSBML.  This program uses the open-source MIT license, as follows:
 *
 * Copyright (c) 2013-2018 by the California Institute of Technology
 * (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
 * and the University of Heidelberg (Germany), with support from the National
 * Institutes of Health (USA) under grant R01GM070923.  All rights reserved.
 *
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 * copy of this software and associated documentation files (the "Software"),
 * to deal in the Software without restriction, including without limitation
 * the rights to use, copy, modify, merge, publish, distribute, sublicense,
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 * of the European Bioinformatics Institute (EMBL-EBI), nor of the University
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 */


#include <iostream>
#include <sbml/SBMLTypes.h>
#include <sbml/conversion/ConversionProperties.h>

using namespace std;
LIBSBML_CPP_NAMESPACE_USE

  int
  main (int argc, char* argv[])
{
  if (argc != 4)
  {
    cout << endl << "Usage: stripPackage input-filename package-to-strip output-filename"
      << endl << endl;
    return 2;
  }

  SBMLDocument *d = readSBML(argv[1]);
  if ( d->getNumErrors(LIBSBML_SEV_ERROR) > 0)
  {
    d->printErrors();
  }
  else
  {
    /* create a new conversion properties structure */
    ConversionProperties props;

    /* add an option that we want to strip a given package */
    props.addOption("stripPackage", true, "Strip SBML Level 3 package constructs from the model");

    /* add an option with the package we want to remove */
    props.addOption("package", argv[2],"Name of the SBML Level 3 package to be stripped");

    /* perform the conversion */
    if (d->convert(props) != LIBSBML_OPERATION_SUCCESS)
    {
      cout<< "conversion failed ... " << endl;
      return 3;
    }

    writeSBML(d, argv[3]);
  }

  return 0;
}