addCVTerm(CVTerm *term, bool newBag=false) | SBase | |
addModifiedDate(Date *date) | SBase | |
appendAnnotation(const XMLNode *annotation) | SBase | virtual |
appendAnnotation(const std::string &annotation) | SBase | virtual |
appendNotes(const XMLNode *notes) | SBase | |
appendNotes(const std::string ¬es) | SBase | |
clone() const | CSGHomogeneousTransformation | virtual |
createCSGHomogeneousTransformation() | CSGTransformation | |
createCSGPrimitive() | CSGTransformation | |
createCSGRotation() | CSGTransformation | |
createCSGScale() | CSGTransformation | |
createCSGSetOperator() | CSGTransformation | |
createCSGTranslation() | CSGTransformation | |
createForwardTransformation() | CSGHomogeneousTransformation | |
CSGHomogeneousTransformation(unsigned int level=SpatialExtension::getDefaultLevel(), unsigned int version=SpatialExtension::getDefaultVersion(), unsigned int pkgVersion=SpatialExtension::getDefaultPackageVersion()) | CSGHomogeneousTransformation | |
CSGHomogeneousTransformation(SpatialPkgNamespaces *spatialns) | CSGHomogeneousTransformation | |
CSGHomogeneousTransformation(const CSGHomogeneousTransformation &orig) | CSGHomogeneousTransformation | |
CSGNode(unsigned int level=SpatialExtension::getDefaultLevel(), unsigned int version=SpatialExtension::getDefaultVersion(), unsigned int pkgVersion=SpatialExtension::getDefaultPackageVersion()) | CSGNode | |
CSGNode(SpatialPkgNamespaces *spatialns) | CSGNode | |
CSGNode(const CSGNode &orig) | CSGNode | |
CSGTransformation(unsigned int level=SpatialExtension::getDefaultLevel(), unsigned int version=SpatialExtension::getDefaultVersion(), unsigned int pkgVersion=SpatialExtension::getDefaultPackageVersion()) | CSGTransformation | |
CSGTransformation(SpatialPkgNamespaces *spatialns) | CSGTransformation | |
CSGTransformation(const CSGTransformation &orig) | CSGTransformation | |
deleteDisabledPlugins(bool recursive=true) | SBase | |
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix) | SBase | |
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag) | SBase | |
getAllElements(ElementFilter *filter=NULL) | CSGHomogeneousTransformation | virtual |
getAllElementsFromPlugins(ElementFilter *filter=NULL) | SBase | virtual |
getAncestorOfType(int type, const std::string &pkgName="core") | SBase | |
getAncestorOfType(int type, const std::string pkgName="core") const | SBase | |
getAnnotation() | SBase | |
getAnnotation() const | SBase | |
getAnnotationString() | SBase | |
getAnnotationString() const | SBase | |
getColumn() const | SBase | |
getCreatedDate() const | SBase | |
getCreatedDate() | SBase | |
getCSGNode() const | CSGTransformation | |
getCSGNode() | CSGTransformation | |
getCVTerm(unsigned int n) | SBase | |
getCVTerms() | SBase | |
getCVTerms() const | SBase | |
getDisabledPlugin(unsigned int n) | SBase | |
getDisabledPlugin(unsigned int n) const | SBase | |
getElementByMetaId(const std::string &metaid) | CSGHomogeneousTransformation | virtual |
CSGNode::getElementByMetaId(const std::string &metaid) const | SBase | |
getElementBySId(const std::string &id) | CSGHomogeneousTransformation | virtual |
CSGNode::getElementBySId(const std::string &id) const | SBase | virtual |
getElementName() const | CSGHomogeneousTransformation | virtual |
getForwardTransformation() const | CSGHomogeneousTransformation | |
getForwardTransformation() | CSGHomogeneousTransformation | |
getId() const | CSGNode | virtual |
getIdAttribute() const | SBase | |
getLevel() const | SBase | |
getLine() const | SBase | |
getMetaId() const | SBase | |
getMetaId() | SBase | |
getModel() const | SBase | |
getModelHistory() const | SBase | |
getModelHistory() | SBase | |
getModifiedDate(unsigned int n) | SBase | |
getName() const | CSGNode | virtual |
getNamespaces() const | SBase | virtual |
getNotes() | SBase | |
getNotes() const | SBase | |
getNotesString() | SBase | |
getNotesString() const | SBase | |
getNumCVTerms() const | SBase | |
getNumDisabledPlugins() const | SBase | |
getNumModifiedDates() | SBase | |
getNumPlugins() const | SBase | |
getPackageCoreVersion() const | SBase | |
getPackageName() const | SBase | |
getPackageVersion() const | SBase | |
getParentSBMLObject() | SBase | |
getParentSBMLObject() const | SBase | |
getPlugin(const std::string &package) | SBase | |
getPlugin(const std::string &package) const | SBase | |
getPlugin(unsigned int n) | SBase | |
getPlugin(unsigned int n) const | SBase | |
getPrefix() const | SBase | |
getResourceBiologicalQualifier(std::string resource) const | SBase | |
getResourceModelQualifier(std::string resource) const | SBase | |
getSBMLDocument() const | SBase | |
getSBMLDocument() | SBase | |
getSBOTerm() const | SBase | |
getSBOTermAsURL() const | SBase | |
getSBOTermID() const | SBase | |
getTypeCode() const | CSGHomogeneousTransformation | virtual |
getURI() const | SBase | |
getUserData() const | SBase | |
getVersion() const | SBase | |
hasRequiredAttributes() const | CSGHomogeneousTransformation | virtual |
hasRequiredElements() const | CSGHomogeneousTransformation | virtual |
hasValidLevelVersionNamespaceCombination() | SBase | |
isCSGHomogeneousTransformation() const | CSGTransformation | virtual |
isCSGPrimitive() const | CSGNode | virtual |
isCSGRotation() const | CSGTransformation | virtual |
isCSGScale() const | CSGTransformation | virtual |
isCSGSetOperator() const | CSGNode | virtual |
isCSGTranslation() const | CSGTransformation | virtual |
isPackageEnabled(const std::string &pkgName) const | SBase | |
isPackageURIEnabled(const std::string &pkgURI) const | SBase | |
isPkgEnabled(const std::string &pkgName) const | SBase | |
isPkgURIEnabled(const std::string &pkgURI) const | SBase | |
isSetAnnotation() const | SBase | |
isSetCreatedDate() const | SBase | |
isSetCSGNode() const | CSGTransformation | |
isSetForwardTransformation() const | CSGHomogeneousTransformation | |
isSetId() const | CSGNode | virtual |
isSetIdAttribute() const | SBase | |
isSetMetaId() const | SBase | |
isSetModelHistory() const | SBase | |
isSetModifiedDate() const | SBase | |
isSetName() const | CSGNode | virtual |
isSetNotes() const | SBase | |
isSetSBOTerm() const | SBase | |
isSetUserData() const | SBase | |
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) | SBase | |
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const | SBase | |
matchesSBMLNamespaces(const SBase *sb) | SBase | |
matchesSBMLNamespaces(const SBase *sb) const | SBase | |
operator=(const CSGHomogeneousTransformation &rhs) | CSGHomogeneousTransformation | |
CSGTransformation::operator=(const CSGTransformation &rhs) | CSGTransformation | |
CSGNode::operator=(const CSGNode &rhs) | CSGNode | |
SBase::operator=(const SBase &rhs) | SBase | |
read(const XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED) | SBase | |
removeFromParentAndDelete() | SBase | virtual |
removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true) | SBase | |
renameMetaIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
renameSIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
renameUnitSIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
replaceTopLevelAnnotationElement(const XMLNode *annotation) | SBase | |
replaceTopLevelAnnotationElement(const std::string &annotation) | SBase | |
setAnnotation(const XMLNode *annotation) | SBase | virtual |
setAnnotation(const std::string &annotation) | SBase | virtual |
setCreatedDate(Date *date) | SBase | |
setCSGNode(const CSGNode *csgNode) | CSGTransformation | |
setElementText(const std::string &text) | SBase | protectedvirtual |
setForwardTransformation(const TransformationComponent *forwardTransformation) | CSGHomogeneousTransformation | |
setId(const std::string &id) | CSGNode | virtual |
setIdAttribute(const std::string &sid) | SBase | virtual |
setMetaId(const std::string &metaid) | SBase | |
setModelHistory(ModelHistory *history) | SBase | |
setName(const std::string &name) | CSGNode | virtual |
setNamespaces(XMLNamespaces *xmlns) | SBase | |
setNotes(const XMLNode *notes) | SBase | |
setNotes(const std::string ¬es, bool addXHTMLMarkup=false) | SBase | |
setSBOTerm(int value) | SBase | virtual |
setSBOTerm(const std::string &sboid) | SBase | virtual |
setUserData(void *userData) | SBase | |
toSBML() | SBase | |
toXMLNode() | SBase | |
unsetAnnotation() | SBase | |
unsetCreatedDate() | SBase | |
unsetCSGNode() | CSGTransformation | |
unsetCVTerms() | SBase | |
unsetForwardTransformation() | CSGHomogeneousTransformation | |
unsetId() | CSGNode | virtual |
unsetIdAttribute() | SBase | |
unsetMetaId() | SBase | |
unsetModelHistory() | SBase | |
unsetModifiedDates() | SBase | |
unsetName() | CSGNode | virtual |
unsetNotes() | SBase | |
unsetSBOTerm() | SBase | |
unsetUserData() | SBase | |
~CSGHomogeneousTransformation() | CSGHomogeneousTransformation | virtual |
~CSGNode() | CSGNode | virtual |
~CSGTransformation() | CSGTransformation | virtual |
~SBase() | SBase | virtual |