addFluxBound(const FluxBound *bound) | FbcModelPlugin | |
addGeneAssociation(const GeneAssociation *association) | FbcModelPlugin | |
addGeneProduct(const GeneProduct *gp) | FbcModelPlugin | |
addKeyValuePair(const KeyValuePair *kvp) | FbcSBasePlugin | |
addObjective(const Objective *o) | FbcModelPlugin | |
addUserDefinedConstraint(const UserDefinedConstraint *udc) | FbcModelPlugin | |
clone() const | FbcModelPlugin | virtual |
createFluxBound() | FbcModelPlugin | |
createGeneAssociation() | FbcModelPlugin | |
createGeneProduct() | FbcModelPlugin | |
createKeyValuePair() | FbcSBasePlugin | |
createObjective() | FbcModelPlugin | |
createUserDefinedConstraint() | FbcModelPlugin | |
FbcModelPlugin(const std::string &uri, const std::string &prefix, FbcPkgNamespaces *fbcns) | FbcModelPlugin | |
FbcModelPlugin(const FbcModelPlugin &orig) | FbcModelPlugin | |
FbcSBasePlugin(const std::string &uri, const std::string &prefix, FbcPkgNamespaces *fbcns) | FbcSBasePlugin | |
FbcSBasePlugin(const FbcSBasePlugin &orig) | FbcSBasePlugin | |
getActiveObjective() | FbcModelPlugin | |
getActiveObjective() const | FbcModelPlugin | |
getActiveObjectiveId() const | FbcModelPlugin | |
getAllElements(ElementFilter *filter=NULL) | FbcModelPlugin | virtual |
getElementByMetaId(const std::string &metaid) | FbcModelPlugin | virtual |
getElementBySId(const std::string &id) | FbcModelPlugin | virtual |
getElementNamespace() const | SBasePlugin | |
getFluxBound(unsigned int n) const | FbcModelPlugin | |
getFluxBound(unsigned int n) | FbcModelPlugin | |
getFluxBound(const std::string &sid) | FbcModelPlugin | |
getFluxBound(const std::string &sid) const | FbcModelPlugin | |
getFluxBoundsForReaction(const std::string &reaction) const | FbcModelPlugin | |
getGeneAssociation(unsigned int n) const | FbcModelPlugin | |
getGeneAssociation(unsigned int n) | FbcModelPlugin | |
getGeneAssociation(const std::string &sid) | FbcModelPlugin | |
getGeneAssociation(const std::string &sid) const | FbcModelPlugin | |
getGeneProduct(unsigned int n) | FbcModelPlugin | |
getGeneProduct(unsigned int n) const | FbcModelPlugin | |
getGeneProduct(const std::string &sid) | FbcModelPlugin | |
getGeneProduct(const std::string &sid) const | FbcModelPlugin | |
getGeneProductByLabel(const std::string &label) | FbcModelPlugin | |
getKeyValuePair(unsigned int n) | FbcSBasePlugin | |
getKeyValuePair(unsigned int n) const | FbcSBasePlugin | |
getKeyValuePair(const std::string &sid) | FbcSBasePlugin | |
getKeyValuePair(const std::string &sid) const | FbcSBasePlugin | |
getLevel() const | SBasePlugin | |
getListOfFluxBounds() const | FbcModelPlugin | |
getListOfFluxBounds() | FbcModelPlugin | |
getListOfGeneAssociations() const | FbcModelPlugin | |
getListOfGeneAssociations() | FbcModelPlugin | |
getListOfGeneProducts() const | FbcModelPlugin | |
getListOfGeneProducts() | FbcModelPlugin | |
getListOfKeyValuePairs() const | FbcSBasePlugin | |
getListOfKeyValuePairs() | FbcSBasePlugin | |
getListOfObjectives() const | FbcModelPlugin | |
getListOfObjectives() | FbcModelPlugin | |
getListOfUserDefinedConstraints() const | FbcModelPlugin | |
getListOfUserDefinedConstraints() | FbcModelPlugin | |
getNumFluxBounds() const | FbcModelPlugin | |
getNumGeneAssociations() const | FbcModelPlugin | |
getNumGeneProducts() const | FbcModelPlugin | |
getNumKeyValuePairs() const | FbcSBasePlugin | |
getNumObjectives() const | FbcModelPlugin | |
getNumUserDefinedConstraints() const | FbcModelPlugin | |
getObjective(unsigned int n) | FbcModelPlugin | |
getObjective(unsigned int n) const | FbcModelPlugin | |
getObjective(const std::string &sid) | FbcModelPlugin | |
getObjective(const std::string &sid) const | FbcModelPlugin | |
getPackageName() const | SBasePlugin | |
getPackageVersion() const | SBasePlugin | |
getParentSBMLObject() | SBasePlugin | |
getParentSBMLObject() const | SBasePlugin | |
getPrefix() const | SBasePlugin | |
getSBMLDocument() | SBasePlugin | |
getSBMLDocument() const | SBasePlugin | |
getStrict() const | FbcModelPlugin | virtual |
getURI() const | SBasePlugin | |
getUserDefinedConstraint(unsigned int n) | FbcModelPlugin | |
getUserDefinedConstraint(unsigned int n) const | FbcModelPlugin | |
getUserDefinedConstraint(const std::string &sid) | FbcModelPlugin | |
getUserDefinedConstraint(const std::string &sid) const | FbcModelPlugin | |
getUserDefinedConstraintByLowerBound(const std::string &sid) const | FbcModelPlugin | |
getUserDefinedConstraintByLowerBound(const std::string &sid) | FbcModelPlugin | |
getUserDefinedConstraintByUpperBound(const std::string &sid) const | FbcModelPlugin | |
getUserDefinedConstraintByUpperBound(const std::string &sid) | FbcModelPlugin | |
getVersion() const | SBasePlugin | |
isSetStrict() const | FbcModelPlugin | virtual |
isValidTypeForList(SBase *item) const | SBasePlugin | virtual |
operator=(const FbcModelPlugin &rhs) | FbcModelPlugin | |
FbcSBasePlugin::operator=(const FbcSBasePlugin &rhs) | FbcSBasePlugin | |
SBasePlugin::operator=(const SBasePlugin &orig) | SBasePlugin | |
removeFluxBound(unsigned int n) | FbcModelPlugin | |
removeFluxBound(const std::string &sid) | FbcModelPlugin | |
removeGeneAssociation(unsigned int n) | FbcModelPlugin | |
removeGeneAssociation(const std::string &sid) | FbcModelPlugin | |
removeGeneProduct(unsigned int n) | FbcModelPlugin | |
removeGeneProduct(const std::string &sid) | FbcModelPlugin | |
removeKeyValuePair(unsigned int n) | FbcSBasePlugin | |
removeKeyValuePair(const std::string &sid) | FbcSBasePlugin | |
removeObjective(unsigned int n) | FbcModelPlugin | |
removeObjective(const std::string &sid) | FbcModelPlugin | |
removeUserDefinedConstraint(unsigned int n) | FbcModelPlugin | |
removeUserDefinedConstraint(const std::string &sid) | FbcModelPlugin | |
renameMetaIdRefs(const std::string &oldid, const std::string &newid) | SBasePlugin | virtual |
renameSIdRefs(const std::string &oldid, const std::string &newid) | SBasePlugin | virtual |
renameUnitSIdRefs(const std::string &oldid, const std::string &newid) | SBasePlugin | virtual |
setActiveObjectiveId(const std::string &objectiveId) | FbcModelPlugin | |
setElementNamespace(const std::string &uri) | SBasePlugin | |
setStrict(bool strict) | FbcModelPlugin | virtual |
unsetActiveObjectiveId() | FbcModelPlugin | |
unsetStrict() | FbcModelPlugin | virtual |
~FbcModelPlugin() | FbcModelPlugin | virtual |
~FbcSBasePlugin() | FbcSBasePlugin | virtual |
~SBasePlugin() | SBasePlugin | virtual |