addCVTerm(CVTerm *term, bool newBag=false) | SBase | |
addInSpeciesTypeBond(const InSpeciesTypeBond *istb) | MultiSpeciesType | |
addModifiedDate(Date *date) | SBase | |
addSpeciesFeatureType(const SpeciesFeatureType *sft) | MultiSpeciesType | |
addSpeciesTypeComponentIndex(const SpeciesTypeComponentIndex *stci) | MultiSpeciesType | |
addSpeciesTypeInstance(const SpeciesTypeInstance *sti) | MultiSpeciesType | |
appendAnnotation(const XMLNode *annotation) | SBase | virtual |
appendAnnotation(const std::string &annotation) | SBase | virtual |
appendNotes(const XMLNode *notes) | SBase | |
appendNotes(const std::string ¬es) | SBase | |
clone() const | MultiSpeciesType | virtual |
createInSpeciesTypeBond() | MultiSpeciesType | |
createSpeciesFeatureType() | MultiSpeciesType | |
createSpeciesTypeComponentIndex() | MultiSpeciesType | |
createSpeciesTypeInstance() | MultiSpeciesType | |
deleteDisabledPlugins(bool recursive=true) | SBase | |
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix) | SBase | |
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag) | SBase | |
getAllElements(ElementFilter *filter=NULL) | MultiSpeciesType | virtual |
getAllElementsFromPlugins(ElementFilter *filter=NULL) | SBase | virtual |
getAncestorOfType(int type, const std::string &pkgName="core") | SBase | |
getAncestorOfType(int type, const std::string pkgName="core") const | SBase | |
getAnnotation() | SBase | |
getAnnotation() const | SBase | |
getAnnotationString() | SBase | |
getAnnotationString() const | SBase | |
getColumn() const | SBase | |
getCompartment() const | MultiSpeciesType | virtual |
getCreatedDate() const | SBase | |
getCreatedDate() | SBase | |
getCVTerm(unsigned int n) | SBase | |
getCVTerms() | SBase | |
getCVTerms() const | SBase | |
getDisabledPlugin(unsigned int n) | SBase | |
getDisabledPlugin(unsigned int n) const | SBase | |
getElementByMetaId(const std::string &metaid) | SBase | virtual |
getElementByMetaId(const std::string &metaid) const | SBase | |
getElementBySId(const std::string &id) | SBase | virtual |
getElementBySId(const std::string &id) const | SBase | virtual |
getElementName() const | MultiSpeciesType | virtual |
getId() const | MultiSpeciesType | virtual |
getIdAttribute() const | SBase | |
getInSpeciesTypeBond(unsigned int n) | MultiSpeciesType | |
getInSpeciesTypeBond(unsigned int n) const | MultiSpeciesType | |
getInSpeciesTypeBond(const std::string &sid) | MultiSpeciesType | |
getInSpeciesTypeBond(const std::string &sid) const | MultiSpeciesType | |
getLevel() const | SBase | |
getLine() const | SBase | |
getListOfInSpeciesTypeBonds() const | MultiSpeciesType | |
getListOfInSpeciesTypeBonds() | MultiSpeciesType | |
getListOfSpeciesFeatureTypes() const | MultiSpeciesType | |
getListOfSpeciesFeatureTypes() | MultiSpeciesType | |
getListOfSpeciesTypeComponentIndexes() const | MultiSpeciesType | |
getListOfSpeciesTypeComponentIndexes() | MultiSpeciesType | |
getListOfSpeciesTypeInstances() const | MultiSpeciesType | |
getListOfSpeciesTypeInstances() | MultiSpeciesType | |
getMetaId() const | SBase | |
getMetaId() | SBase | |
getModel() const | SBase | |
getModelHistory() const | SBase | |
getModelHistory() | SBase | |
getModifiedDate(unsigned int n) | SBase | |
getName() const | MultiSpeciesType | virtual |
getNamespaces() const | SBase | virtual |
getNotes() | SBase | |
getNotes() const | SBase | |
getNotesString() | SBase | |
getNotesString() const | SBase | |
getNumCVTerms() const | SBase | |
getNumDisabledPlugins() const | SBase | |
getNumInSpeciesTypeBonds() const | MultiSpeciesType | |
getNumModifiedDates() | SBase | |
getNumPlugins() const | SBase | |
getNumSpeciesFeatureTypes() const | MultiSpeciesType | |
getNumSpeciesTypeComponentIndexes() const | MultiSpeciesType | |
getNumSpeciesTypeInstances() const | MultiSpeciesType | |
getPackageCoreVersion() const | SBase | |
getPackageName() const | SBase | |
getPackageVersion() const | SBase | |
getParentSBMLObject() | SBase | |
getParentSBMLObject() const | SBase | |
getPlugin(const std::string &package) | SBase | |
getPlugin(const std::string &package) const | SBase | |
getPlugin(unsigned int n) | SBase | |
getPlugin(unsigned int n) const | SBase | |
getPrefix() const | SBase | |
getResourceBiologicalQualifier(std::string resource) const | SBase | |
getResourceModelQualifier(std::string resource) const | SBase | |
getSBMLDocument() const | SBase | |
getSBMLDocument() | SBase | |
getSBOTerm() const | SBase | |
getSBOTermAsURL() const | SBase | |
getSBOTermID() const | SBase | |
getSpeciesFeatureType(unsigned int n) | MultiSpeciesType | |
getSpeciesFeatureType(unsigned int n) const | MultiSpeciesType | |
getSpeciesFeatureType(const std::string &sid) | MultiSpeciesType | |
getSpeciesFeatureType(const std::string &sid) const | MultiSpeciesType | |
getSpeciesTypeComponentIndex(unsigned int n) | MultiSpeciesType | |
getSpeciesTypeComponentIndex(unsigned int n) const | MultiSpeciesType | |
getSpeciesTypeComponentIndex(const std::string &sid) | MultiSpeciesType | |
getSpeciesTypeComponentIndex(const std::string &sid) const | MultiSpeciesType | |
getSpeciesTypeInstance(unsigned int n) | MultiSpeciesType | |
getSpeciesTypeInstance(unsigned int n) const | MultiSpeciesType | |
getSpeciesTypeInstance(const std::string &sid) | MultiSpeciesType | |
getSpeciesTypeInstance(const std::string &sid) const | MultiSpeciesType | |
getTypeCode() const | MultiSpeciesType | virtual |
getURI() const | SBase | |
getUserData() const | SBase | |
getVersion() const | SBase | |
hasRequiredAttributes() const | MultiSpeciesType | virtual |
hasRequiredElements() const | MultiSpeciesType | virtual |
hasValidLevelVersionNamespaceCombination() | SBase | |
isPackageEnabled(const std::string &pkgName) const | SBase | |
isPackageURIEnabled(const std::string &pkgURI) const | SBase | |
isPkgEnabled(const std::string &pkgName) const | SBase | |
isPkgURIEnabled(const std::string &pkgURI) const | SBase | |
isSetAnnotation() const | SBase | |
isSetCompartment() const | MultiSpeciesType | virtual |
isSetCreatedDate() const | SBase | |
isSetId() const | MultiSpeciesType | virtual |
isSetIdAttribute() const | SBase | |
isSetMetaId() const | SBase | |
isSetModelHistory() const | SBase | |
isSetModifiedDate() const | SBase | |
isSetName() const | MultiSpeciesType | virtual |
isSetNotes() const | SBase | |
isSetSBOTerm() const | SBase | |
isSetUserData() const | SBase | |
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) | SBase | |
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const | SBase | |
matchesSBMLNamespaces(const SBase *sb) | SBase | |
matchesSBMLNamespaces(const SBase *sb) const | SBase | |
MultiSpeciesType(unsigned int level=MultiExtension::getDefaultLevel(), unsigned int version=MultiExtension::getDefaultVersion(), unsigned int pkgVersion=MultiExtension::getDefaultPackageVersion()) | MultiSpeciesType | |
MultiSpeciesType(MultiPkgNamespaces *multins) | MultiSpeciesType | |
MultiSpeciesType(const MultiSpeciesType &orig) | MultiSpeciesType | |
operator=(const MultiSpeciesType &rhs) | MultiSpeciesType | |
SBase::operator=(const SBase &rhs) | SBase | |
read(const XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED) | SBase | |
removeFromParentAndDelete() | SBase | virtual |
removeInSpeciesTypeBond(unsigned int n) | MultiSpeciesType | |
removeInSpeciesTypeBond(const std::string &sid) | MultiSpeciesType | |
removeSpeciesFeatureType(unsigned int n) | MultiSpeciesType | |
removeSpeciesFeatureType(const std::string &sid) | MultiSpeciesType | |
removeSpeciesTypeComponentIndex(unsigned int n) | MultiSpeciesType | |
removeSpeciesTypeComponentIndex(const std::string &sid) | MultiSpeciesType | |
removeSpeciesTypeInstance(unsigned int n) | MultiSpeciesType | |
removeSpeciesTypeInstance(const std::string &sid) | MultiSpeciesType | |
removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true) | SBase | |
renameMetaIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
renameSIdRefs(const std::string &oldid, const std::string &newid) | MultiSpeciesType | virtual |
renameUnitSIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
replaceTopLevelAnnotationElement(const XMLNode *annotation) | SBase | |
replaceTopLevelAnnotationElement(const std::string &annotation) | SBase | |
setAnnotation(const XMLNode *annotation) | SBase | virtual |
setAnnotation(const std::string &annotation) | SBase | virtual |
setCompartment(const std::string &compartment) | MultiSpeciesType | virtual |
setCreatedDate(Date *date) | SBase | |
setElementText(const std::string &text) | SBase | protectedvirtual |
setId(const std::string &id) | MultiSpeciesType | virtual |
setIdAttribute(const std::string &sid) | SBase | virtual |
setMetaId(const std::string &metaid) | SBase | |
setModelHistory(ModelHistory *history) | SBase | |
setName(const std::string &name) | MultiSpeciesType | virtual |
setNamespaces(XMLNamespaces *xmlns) | SBase | |
setNotes(const XMLNode *notes) | SBase | |
setNotes(const std::string ¬es, bool addXHTMLMarkup=false) | SBase | |
setSBOTerm(int value) | SBase | virtual |
setSBOTerm(const std::string &sboid) | SBase | virtual |
setUserData(void *userData) | SBase | |
toSBML() | SBase | |
toXMLNode() | SBase | |
unsetAnnotation() | SBase | |
unsetCompartment() | MultiSpeciesType | virtual |
unsetCreatedDate() | SBase | |
unsetCVTerms() | SBase | |
unsetId() | MultiSpeciesType | virtual |
unsetIdAttribute() | SBase | |
unsetMetaId() | SBase | |
unsetModelHistory() | SBase | |
unsetModifiedDates() | SBase | |
unsetName() | MultiSpeciesType | virtual |
unsetNotes() | SBase | |
unsetSBOTerm() | SBase | |
unsetUserData() | SBase | |
~MultiSpeciesType() | MultiSpeciesType | virtual |
~SBase() | SBase | virtual |