Reaction Member List

This is the complete list of members for Reaction, including all inherited members.

addCVTerm(CVTerm *term, bool newBag=false)	SBase
addModifiedDate(Date *date)	SBase
addModifier(const ModifierSpeciesReference *msr)	Reaction
addModifier(const Species *species, const std::string id="")	Reaction
addProduct(const SpeciesReference *sr)	Reaction
addProduct(const Species *species, double stoichiometry=1.0, const std::string id="", bool constant=true)	Reaction
addReactant(const SpeciesReference *sr)	Reaction
addReactant(const Species *species, double stoichiometry=1.0, const std::string id="", bool constant=true)	Reaction
appendAnnotation(const XMLNode *annotation)	SBase	virtual
appendAnnotation(const std::string &annotation)	SBase	virtual
appendNotes(const XMLNode *notes)	SBase
appendNotes(const std::string &notes)	SBase
clone() const	Reaction	virtual
createKineticLaw()	Reaction
createModifier()	Reaction
createProduct()	Reaction
createReactant()	Reaction
deleteDisabledPlugins(bool recursive=true)	SBase
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix)	SBase
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag)	SBase
getAllElements(ElementFilter *filter=NULL)	Reaction	virtual
getAllElementsFromPlugins(ElementFilter *filter=NULL)	SBase	virtual
getAncestorOfType(int type, const std::string &pkgName="core")	SBase
getAncestorOfType(int type, const std::string pkgName="core") const	SBase
getAnnotation()	SBase
getAnnotation() const	SBase
getAnnotationString()	SBase
getAnnotationString() const	SBase
getColumn() const	SBase
getCompartment() const	Reaction
getCreatedDate() const	SBase
getCreatedDate()	SBase
getCVTerm(unsigned int n)	SBase
getCVTerms()	SBase
getCVTerms() const	SBase
getDisabledPlugin(unsigned int n)	SBase
getDisabledPlugin(unsigned int n) const	SBase
getElementByMetaId(const std::string &metaid)	Reaction	virtual
SBase::getElementByMetaId(const std::string &metaid) const	SBase
getElementBySId(const std::string &id)	Reaction	virtual
SBase::getElementBySId(const std::string &id) const	SBase	virtual
getElementName() const	Reaction	virtual
getFast() const	Reaction
getId() const	Reaction	virtual
getIdAttribute() const	SBase
getKineticLaw() const	Reaction
getKineticLaw()	Reaction
getLevel() const	SBase
getLine() const	SBase
getListOfModifiers() const	Reaction
getListOfModifiers()	Reaction
getListOfProducts() const	Reaction
getListOfProducts()	Reaction
getListOfReactants() const	Reaction
getListOfReactants()	Reaction
getMetaId() const	SBase
getMetaId()	SBase
getModel() const	SBase
getModelHistory() const	SBase
getModelHistory()	SBase
getModifiedDate(unsigned int n)	SBase
getModifier(unsigned int n) const	Reaction
getModifier(unsigned int n)	Reaction
getModifier(const std::string &species) const	Reaction
getModifier(const std::string &species)	Reaction
getName() const	Reaction	virtual
getNamespaces() const	SBase	virtual
getNotes()	SBase
getNotes() const	SBase
getNotesString()	SBase
getNotesString() const	SBase
getNumCVTerms() const	SBase
getNumDisabledPlugins() const	SBase
getNumModifiedDates()	SBase
getNumModifiers() const	Reaction
getNumPlugins() const	SBase
getNumProducts() const	Reaction
getNumReactants() const	Reaction
getPackageCoreVersion() const	SBase
getPackageName() const	SBase
getPackageVersion() const	SBase
getParentSBMLObject()	SBase
getParentSBMLObject() const	SBase
getPlugin(const std::string &package)	SBase
getPlugin(const std::string &package) const	SBase
getPlugin(unsigned int n)	SBase
getPlugin(unsigned int n) const	SBase
getPrefix() const	SBase
getProduct(unsigned int n) const	Reaction
getProduct(unsigned int n)	Reaction
getProduct(const std::string &species) const	Reaction
getProduct(const std::string &species)	Reaction
getReactant(unsigned int n) const	Reaction
getReactant(unsigned int n)	Reaction
getReactant(const std::string &species) const	Reaction
getReactant(const std::string &species)	Reaction
getResourceBiologicalQualifier(std::string resource) const	SBase
getResourceModelQualifier(std::string resource) const	SBase
getReversible() const	Reaction
getSBMLDocument() const	SBase
getSBMLDocument()	SBase
getSBOTerm() const	SBase
getSBOTermAsURL() const	SBase
getSBOTermID() const	SBase
getTypeCode() const	Reaction	virtual
getURI() const	SBase
getUserData() const	SBase
getVersion() const	SBase
hasRequiredAttributes() const	Reaction	virtual
hasValidLevelVersionNamespaceCombination()	SBase
initDefaults()	Reaction
isPackageEnabled(const std::string &pkgName) const	SBase
isPackageURIEnabled(const std::string &pkgURI) const	SBase
isPkgEnabled(const std::string &pkgName) const	SBase
isPkgURIEnabled(const std::string &pkgURI) const	SBase
isSetAnnotation() const	SBase
isSetCompartment() const	Reaction
isSetCreatedDate() const	SBase
isSetFast() const	Reaction
isSetId() const	Reaction	virtual
isSetIdAttribute() const	SBase
isSetKineticLaw() const	Reaction
isSetMetaId() const	SBase
isSetModelHistory() const	SBase
isSetModifiedDate() const	SBase
isSetName() const	Reaction	virtual
isSetNotes() const	SBase
isSetReversible() const	Reaction
isSetSBOTerm() const	SBase
isSetUserData() const	SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb)	SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const	SBase
matchesSBMLNamespaces(const SBase *sb)	SBase
matchesSBMLNamespaces(const SBase *sb) const	SBase
operator=(const Reaction &rhs)	Reaction
SBase::operator=(const SBase &rhs)	SBase
Reaction(unsigned int level, unsigned int version)	Reaction
Reaction(SBMLNamespaces *sbmlns)	Reaction
Reaction(const Reaction &orig)	Reaction
read(const XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED)	SBase
removeFromParentAndDelete()	SBase	virtual
removeModifier(unsigned int n)	Reaction
removeModifier(const std::string &species)	Reaction
removeProduct(unsigned int n)	Reaction
removeProduct(const std::string &species)	Reaction
removeReactant(unsigned int n)	Reaction
removeReactant(const std::string &species)	Reaction
removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true)	SBase
renameMetaIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
renameSIdRefs(const std::string &oldid, const std::string &newid)	Reaction	virtual
renameUnitSIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
replaceTopLevelAnnotationElement(const XMLNode *annotation)	SBase
replaceTopLevelAnnotationElement(const std::string &annotation)	SBase
setAnnotation(const XMLNode *annotation)	SBase	virtual
setAnnotation(const std::string &annotation)	SBase	virtual
setCompartment(const std::string &sid)	Reaction
setCreatedDate(Date *date)	SBase
setElementText(const std::string &text)	SBase	protectedvirtual
setFast(bool value)	Reaction
setId(const std::string &sid)	Reaction	virtual
setIdAttribute(const std::string &sid)	SBase	virtual
setKineticLaw(const KineticLaw *kl)	Reaction
setMetaId(const std::string &metaid)	SBase
setModelHistory(ModelHistory *history)	SBase
setName(const std::string &name)	Reaction	virtual
setNamespaces(XMLNamespaces *xmlns)	SBase
setNotes(const XMLNode *notes)	SBase
setNotes(const std::string &notes, bool addXHTMLMarkup=false)	SBase
setReversible(bool value)	Reaction
setSBOTerm(int value)	SBase	virtual
setSBOTerm(const std::string &sboid)	SBase	virtual
setUserData(void *userData)	SBase
toSBML()	SBase
toXMLNode()	SBase
unsetAnnotation()	SBase
unsetCompartment()	Reaction
unsetCreatedDate()	SBase
unsetCVTerms()	SBase
unsetFast()	Reaction
unsetId()	SBase	virtual
unsetIdAttribute()	SBase
unsetKineticLaw()	Reaction
unsetMetaId()	SBase
unsetModelHistory()	SBase
unsetModifiedDates()	SBase
unsetName()	Reaction	virtual
unsetNotes()	SBase
unsetReversible()	Reaction
unsetSBOTerm()	SBase
unsetUserData()	SBase
~Reaction()	Reaction	virtual
~SBase()	SBase	virtual