SBaseRef Member List

This is the complete list of members for SBaseRef, including all inherited members.

addCVTerm(CVTerm *term, bool newBag=false)	SBase
addModifiedDate(Date *date)	SBase
appendAnnotation(const XMLNode *annotation)	SBase	virtual
appendAnnotation(const std::string &annotation)	SBase	virtual
appendNotes(const XMLNode *notes)	SBase
appendNotes(const std::string &notes)	SBase
clearReferencedElement()	SBaseRef	virtual
clone() const	SBaseRef	virtual
collectDeletions(std::set< SBase * > *removed, std::set< SBase * > *toremove)	SBaseRef	privatevirtual
CompBase(unsigned int level=CompExtension::getDefaultLevel(), unsigned int version=CompExtension::getDefaultVersion(), unsigned int pkgVersion=CompExtension::getDefaultPackageVersion())	CompBase
CompBase(CompPkgNamespaces *compns)	CompBase
CompBase(const CompBase &source)	CompBase
createSBaseRef()	SBaseRef
deleteDisabledPlugins(bool recursive=true)	SBase
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix)	SBase
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag)	SBase
getAllElements(ElementFilter *filter=NULL)	SBaseRef	virtual
getAllElementsFromPlugins(ElementFilter *filter=NULL)	SBase	virtual
getAncestorOfType(int type, const std::string &pkgName="core")	SBase
getAncestorOfType(int type, const std::string pkgName="core") const	SBase
getAnnotation()	SBase
getAnnotation() const	SBase
getAnnotationString()	SBase
getAnnotationString() const	SBase
getColumn() const	SBase
getCreatedDate() const	SBase
getCreatedDate()	SBase
getCVTerm(unsigned int n)	SBase
getCVTerms()	SBase
getCVTerms() const	SBase
getDisabledPlugin(unsigned int n)	SBase
getDisabledPlugin(unsigned int n) const	SBase
getElementByMetaId(const std::string &metaid)	SBaseRef	virtual
CompBase::getElementByMetaId(const std::string &metaid) const	SBase
getElementBySId(const std::string &id)	SBaseRef	virtual
CompBase::getElementBySId(const std::string &id) const	SBase	virtual
getElementName() const	SBaseRef	virtual
getId() const	SBase	virtual
getIdAttribute() const	SBase
getIdRef() const	SBaseRef	virtual
getLevel() const	SBase
getLine() const	SBase
getMetaId() const	SBase
getMetaId()	SBase
getMetaIdRef() const	SBaseRef	virtual
getModel() const	SBase
getModelHistory() const	SBase
getModelHistory()	SBase
getModifiedDate(unsigned int n)	SBase
getName() const	SBase	virtual
getNamespaces() const	SBase	virtual
getNotes()	SBase
getNotes() const	SBase
getNotesString()	SBase
getNotesString() const	SBase
getNumCVTerms() const	SBase
getNumDisabledPlugins() const	SBase
getNumModifiedDates()	SBase
getNumPlugins() const	SBase
getNumReferents() const	SBaseRef	virtual
getPackageCoreVersion() const	SBase
getPackageName() const	CompBase
getPackageURI() const	CompBase
getPackageVersion() const	CompBase
getParentModel(SBase *child)	CompBase	static
getParentSBMLObject()	SBase
getParentSBMLObject() const	SBase
getPlugin(const std::string &package)	SBase
getPlugin(const std::string &package) const	SBase
getPlugin(unsigned int n)	SBase
getPlugin(unsigned int n) const	SBase
getPortRef() const	SBaseRef	virtual
getPrefix() const	SBase
getReferencedElement()	SBaseRef	virtual
getReferencedElementFrom(Model *model)	SBaseRef	virtual
getResourceBiologicalQualifier(std::string resource) const	SBase
getResourceModelQualifier(std::string resource) const	SBase
getSBaseRef() const	SBaseRef
getSBaseRef()	SBaseRef
getSBMLDocument() const	SBase
getSBMLDocument()	SBase
getSBOTerm() const	SBase
getSBOTermAsURL() const	SBase
getSBOTermID() const	SBase
getTypeCode() const	SBaseRef	virtual
getUnitRef() const	SBaseRef	virtual
getURI() const	SBase
getUserData() const	SBase
getVersion() const	SBase
hasRequiredAttributes() const	SBaseRef	virtual
hasValidLevelVersionNamespaceCombination()	CompBase	protected
isPackageEnabled(const std::string &pkgName) const	SBase
isPackageURIEnabled(const std::string &pkgURI) const	SBase
isPkgEnabled(const std::string &pkgName) const	SBase
isPkgURIEnabled(const std::string &pkgURI) const	SBase
isSetAnnotation() const	SBase
isSetCreatedDate() const	SBase
isSetId() const	SBase	virtual
isSetIdAttribute() const	SBase
isSetIdRef() const	SBaseRef	virtual
isSetMetaId() const	SBase
isSetMetaIdRef() const	SBaseRef	virtual
isSetModelHistory() const	SBase
isSetModifiedDate() const	SBase
isSetName() const	SBase	virtual
isSetNotes() const	SBase
isSetPortRef() const	SBaseRef	virtual
isSetSBaseRef() const	SBaseRef
isSetSBOTerm() const	SBase
isSetUnitRef() const	SBaseRef	virtual
isSetUserData() const	SBase
logEmptyString(const std::string &attribute, const std::string &element)	CompBase	protectedvirtual
logInvalidId(const std::string &attribute, const std::string &wrongattribute, const std::string object="")	CompBase	protectedvirtual
logMissingAttribute(const std::string &attribute, const std::string &element)	CompBase	protectedvirtual
logUnknownAttribute(const std::string &attribute, const std::string &element)	CompBase	protectedvirtual
logUnknownElement(const std::string &element)	CompBase	protectedvirtual
matchesRequiredSBMLNamespacesForAddition(const SBase *sb)	SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const	SBase
matchesSBMLNamespaces(const SBase *sb)	SBase
matchesSBMLNamespaces(const SBase *sb) const	SBase
operator=(const SBaseRef &source)	SBaseRef
CompBase::operator=(const CompBase &source)	CompBase
SBase::operator=(const SBase &rhs)	SBase
performDeletion()	SBaseRef	virtual
read(const XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED)	SBase
readAttributes(const XMLAttributes &attributes, const ExpectedAttributes &expectedAttributes, bool hasCompIdName, bool idRequired, CompSBMLErrorCode_t errcode)	CompBase	protectedvirtual
removeFromParentAndDelete()	SBaseRef	virtual
removeFromParentAndPorts(SBase *todelete, std::set< SBase * > *removed)	CompBase	protectedstatic
removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true)	SBase
renameMetaIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
renameSIdRefs(const std::string &oldid, const std::string &newid)	SBaseRef	virtual
renameUnitSIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
replaceTopLevelAnnotationElement(const XMLNode *annotation)	SBase
replaceTopLevelAnnotationElement(const std::string &annotation)	SBase
saveReferencedElement()	SBaseRef	virtual
SBaseRef(unsigned int level=CompExtension::getDefaultLevel(), unsigned int version=CompExtension::getDefaultVersion(), unsigned int pkgVersion=CompExtension::getDefaultPackageVersion())	SBaseRef
SBaseRef(CompPkgNamespaces *compns)	SBaseRef
SBaseRef(const SBaseRef &source)	SBaseRef
setAnnotation(const XMLNode *annotation)	SBase	virtual
setAnnotation(const std::string &annotation)	SBase	virtual
setCreatedDate(Date *date)	SBase
setElementText(const std::string &text)	SBase	protectedvirtual
setId(const std::string &sid)	SBase	virtual
setIdAttribute(const std::string &sid)	SBase	virtual
setIdRef(const std::string &id)	SBaseRef	virtual
setMetaId(const std::string &metaid)	SBase
setMetaIdRef(const std::string &id)	SBaseRef	virtual
setModelHistory(ModelHistory *history)	SBase
setName(const std::string &name)	SBase	virtual
setNamespaces(XMLNamespaces *xmlns)	SBase
setNotes(const XMLNode *notes)	SBase
setNotes(const std::string &notes, bool addXHTMLMarkup=false)	SBase
setPortRef(const std::string &id)	SBaseRef	virtual
setSBaseRef(const SBaseRef *sBaseRef)	SBaseRef
setSBOTerm(int value)	SBase	virtual
setSBOTerm(const std::string &sboid)	SBase	virtual
setUnitRef(const std::string &id)	SBaseRef	virtual
setUserData(void *userData)	SBase
toSBML()	SBase
toXMLNode()	SBase
unsetAnnotation()	SBase
unsetCreatedDate()	SBase
unsetCVTerms()	SBase
unsetId()	SBase	virtual
unsetIdAttribute()	SBase
unsetIdRef()	SBaseRef	virtual
unsetMetaId()	SBase
unsetMetaIdRef()	SBaseRef	virtual
unsetModelHistory()	SBase
unsetModifiedDates()	SBase
unsetName()	SBase	virtual
unsetNotes()	SBase
unsetPortRef()	SBaseRef	virtual
unsetSBaseRef()	SBaseRef	virtual
unsetSBOTerm()	SBase
unsetUnitRef()	SBaseRef	virtual
unsetUserData()	SBase
writeAttributes(XMLOutputStream &stream) const	CompBase	protectedvirtual
~CompBase()	CompBase	virtual
~SBase()	SBase	virtual
~SBaseRef()	SBaseRef	virtual