Species Member List

This is the complete list of members for Species, including all inherited members.

addCVTerm(CVTerm *term, bool newBag=false)	SBase
addModifiedDate(Date *date)	SBase
appendAnnotation(const XMLNode *annotation)	SBase	virtual
appendAnnotation(const std::string &annotation)	SBase	virtual
appendNotes(const XMLNode *notes)	SBase
appendNotes(const std::string &notes)	SBase
clone() const	Species	virtual
deleteDisabledPlugins(bool recursive=true)	SBase
disablePackage(const std::string &pkgURI, const std::string &pkgPrefix)	SBase
enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag)	SBase
getAllElements(ElementFilter *filter=NULL)	SBase	virtual
getAllElementsFromPlugins(ElementFilter *filter=NULL)	SBase	virtual
getAncestorOfType(int type, const std::string &pkgName="core")	SBase
getAncestorOfType(int type, const std::string pkgName="core") const	SBase
getAnnotation()	SBase
getAnnotation() const	SBase
getAnnotationString()	SBase
getAnnotationString() const	SBase
getBoundaryCondition() const	Species
getCharge() const	Species
getColumn() const	SBase
getCompartment() const	Species
getConstant() const	Species
getConversionFactor() const	Species
getCreatedDate() const	SBase
getCreatedDate()	SBase
getCVTerm(unsigned int n)	SBase
getCVTerms()	SBase
getCVTerms() const	SBase
getDerivedUnitDefinition()	Species
getDerivedUnitDefinition() const	Species
getDisabledPlugin(unsigned int n)	SBase
getDisabledPlugin(unsigned int n) const	SBase
getElementByMetaId(const std::string &metaid)	SBase	virtual
getElementByMetaId(const std::string &metaid) const	SBase
getElementBySId(const std::string &id)	SBase	virtual
getElementBySId(const std::string &id) const	SBase	virtual
getElementName() const	Species	virtual
getHasOnlySubstanceUnits() const	Species
getId() const	Species	virtual
getIdAttribute() const	SBase
getInitialAmount() const	Species
getInitialConcentration() const	Species
getLevel() const	SBase
getLine() const	SBase
getMetaId() const	SBase
getMetaId()	SBase
getModel() const	SBase
getModelHistory() const	SBase
getModelHistory()	SBase
getModifiedDate(unsigned int n)	SBase
getName() const	Species	virtual
getNamespaces() const	SBase	virtual
getNotes()	SBase
getNotes() const	SBase
getNotesString()	SBase
getNotesString() const	SBase
getNumCVTerms() const	SBase
getNumDisabledPlugins() const	SBase
getNumModifiedDates()	SBase
getNumPlugins() const	SBase
getPackageCoreVersion() const	SBase
getPackageName() const	SBase
getPackageVersion() const	SBase
getParentSBMLObject()	SBase
getParentSBMLObject() const	SBase
getPlugin(const std::string &package)	SBase
getPlugin(const std::string &package) const	SBase
getPlugin(unsigned int n)	SBase
getPlugin(unsigned int n) const	SBase
getPrefix() const	SBase
getResourceBiologicalQualifier(std::string resource) const	SBase
getResourceModelQualifier(std::string resource) const	SBase
getSBMLDocument() const	SBase
getSBMLDocument()	SBase
getSBOTerm() const	SBase
getSBOTermAsURL() const	SBase
getSBOTermID() const	SBase
getSpatialSizeUnits() const	Species
getSpeciesType() const	Species
getSubstanceUnits() const	Species
getTypeCode() const	Species	virtual
getUnits() const	Species
getURI() const	SBase
getUserData() const	SBase
getVersion() const	SBase
hasRequiredAttributes() const	Species	virtual
hasValidLevelVersionNamespaceCombination()	SBase
initDefaults()	Species
isPackageEnabled(const std::string &pkgName) const	SBase
isPackageURIEnabled(const std::string &pkgURI) const	SBase
isPkgEnabled(const std::string &pkgName) const	SBase
isPkgURIEnabled(const std::string &pkgURI) const	SBase
isSetAnnotation() const	SBase
isSetBoundaryCondition() const	Species
isSetCharge() const	Species
isSetCompartment() const	Species
isSetConstant() const	Species
isSetConversionFactor() const	Species
isSetCreatedDate() const	SBase
isSetHasOnlySubstanceUnits() const	Species
isSetId() const	Species	virtual
isSetIdAttribute() const	SBase
isSetInitialAmount() const	Species
isSetInitialConcentration() const	Species
isSetMetaId() const	SBase
isSetModelHistory() const	SBase
isSetModifiedDate() const	SBase
isSetName() const	Species	virtual
isSetNotes() const	SBase
isSetSBOTerm() const	SBase
isSetSpatialSizeUnits() const	Species
isSetSpeciesType() const	Species
isSetSubstanceUnits() const	Species
isSetUnits() const	Species
isSetUserData() const	SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb)	SBase
matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const	SBase
matchesSBMLNamespaces(const SBase *sb)	SBase
matchesSBMLNamespaces(const SBase *sb) const	SBase
operator=(const Species &rhs)	Species
SBase::operator=(const SBase &rhs)	SBase
read(const XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED)	SBase
removeFromParentAndDelete()	SBase	virtual
removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true)	SBase
renameMetaIdRefs(const std::string &oldid, const std::string &newid)	SBase	virtual
renameSIdRefs(const std::string &oldid, const std::string &newid)	Species	virtual
renameUnitSIdRefs(const std::string &oldid, const std::string &newid)	Species	virtual
replaceTopLevelAnnotationElement(const XMLNode *annotation)	SBase
replaceTopLevelAnnotationElement(const std::string &annotation)	SBase
setAnnotation(const XMLNode *annotation)	SBase	virtual
setAnnotation(const std::string &annotation)	SBase	virtual
setBoundaryCondition(bool value)	Species
setCharge(int value)	Species
setCompartment(const std::string &sid)	Species
setConstant(bool value)	Species
setConversionFactor(const std::string &sid)	Species
setCreatedDate(Date *date)	SBase
setElementText(const std::string &text)	SBase	protectedvirtual
setHasOnlySubstanceUnits(bool value)	Species
setId(const std::string &sid)	Species	virtual
setIdAttribute(const std::string &sid)	SBase	virtual
setInitialAmount(double value)	Species
setInitialConcentration(double value)	Species
setMetaId(const std::string &metaid)	SBase
setModelHistory(ModelHistory *history)	SBase
setName(const std::string &name)	Species	virtual
setNamespaces(XMLNamespaces *xmlns)	SBase
setNotes(const XMLNode *notes)	SBase
setNotes(const std::string &notes, bool addXHTMLMarkup=false)	SBase
setSBOTerm(int value)	SBase	virtual
setSBOTerm(const std::string &sboid)	SBase	virtual
setSpatialSizeUnits(const std::string &sid)	Species
setSpeciesType(const std::string &sid)	Species
setSubstanceUnits(const std::string &sid)	Species
setUnits(const std::string &sname)	Species
setUserData(void *userData)	SBase
Species(unsigned int level, unsigned int version)	Species
Species(SBMLNamespaces *sbmlns)	Species
Species(const Species &orig)	Species
toSBML()	SBase
toXMLNode()	SBase
unsetAnnotation()	SBase
unsetBoundaryCondition()	Species
unsetCharge()	Species
unsetCompartment()	Species
unsetConstant()	Species
unsetConversionFactor()	Species
unsetCreatedDate()	SBase
unsetCVTerms()	SBase
unsetHasOnlySubstanceUnits()	Species
unsetId()	SBase	virtual
unsetIdAttribute()	SBase
unsetInitialAmount()	Species
unsetInitialConcentration()	Species
unsetMetaId()	SBase
unsetModelHistory()	SBase
unsetModifiedDates()	SBase
unsetName()	Species	virtual
unsetNotes()	SBase
unsetSBOTerm()	SBase
unsetSpatialSizeUnits()	Species
unsetSpeciesType()	Species
unsetSubstanceUnits()	Species
unsetUnits()	Species
unsetUserData()	SBase
~SBase()	SBase	virtual
~Species()	Species	virtual