| addCVTerm(CVTerm *term, bool newBag=false) | SBase | |
| addModifiedDate(Date *date) | SBase | |
| appendAnnotation(const XMLNode *annotation) | SBase | virtual |
| appendAnnotation(const std::string &annotation) | SBase | virtual |
| appendNotes(const XMLNode *notes) | SBase | |
| appendNotes(const std::string ¬es) | SBase | |
| clone() const | SpeciesReferenceGlyph | virtual |
| createCubicBezier() | SpeciesReferenceGlyph | |
| createLineSegment() | SpeciesReferenceGlyph | |
| deleteDisabledPlugins(bool recursive=true) | SBase | |
| disablePackage(const std::string &pkgURI, const std::string &pkgPrefix) | SBase | |
| enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag) | SBase | |
| getAllElements(ElementFilter *filter=NULL) | SpeciesReferenceGlyph | virtual |
| getAllElementsFromPlugins(ElementFilter *filter=NULL) | SBase | virtual |
| getAncestorOfType(int type, const std::string &pkgName="core") | SBase | |
| getAncestorOfType(int type, const std::string pkgName="core") const | SBase | |
| getAnnotation() | SBase | |
| getAnnotation() const | SBase | |
| getAnnotationString() | SBase | |
| getAnnotationString() const | SBase | |
| getBoundingBox() | GraphicalObject | |
| getBoundingBox() const | GraphicalObject | |
| getBoundingBoxExplicitlySet() const | GraphicalObject | |
| getColumn() const | SBase | |
| getCreatedDate() const | SBase | |
| getCreatedDate() | SBase | |
| getCurve() | SpeciesReferenceGlyph | |
| getCurve() const | SpeciesReferenceGlyph | |
| getCurveExplicitlySet() const | SpeciesReferenceGlyph | |
| getCVTerm(unsigned int n) | SBase | |
| getCVTerms() | SBase | |
| getCVTerms() const | SBase | |
| getDisabledPlugin(unsigned int n) | SBase | |
| getDisabledPlugin(unsigned int n) const | SBase | |
| getElementByMetaId(const std::string &metaid) | SBase | virtual |
| getElementByMetaId(const std::string &metaid) const | SBase | |
| getElementBySId(const std::string &id) | SBase | virtual |
| getElementBySId(const std::string &id) const | SBase | virtual |
| getElementName() const | SpeciesReferenceGlyph | virtual |
| getId() const | GraphicalObject | virtual |
| getIdAttribute() const | SBase | |
| getLevel() const | SBase | |
| getLine() const | SBase | |
| getMetaId() const | SBase | |
| getMetaId() | SBase | |
| getMetaIdRef() const | GraphicalObject | virtual |
| getModel() const | SBase | |
| getModelHistory() const | SBase | |
| getModelHistory() | SBase | |
| getModifiedDate(unsigned int n) | SBase | |
| getName() const | SBase | virtual |
| getNamespaces() const | SBase | virtual |
| getNotes() | SBase | |
| getNotes() const | SBase | |
| getNotesString() | SBase | |
| getNotesString() const | SBase | |
| getNumCVTerms() const | SBase | |
| getNumDisabledPlugins() const | SBase | |
| getNumModifiedDates() | SBase | |
| getNumPlugins() const | SBase | |
| getPackageCoreVersion() const | SBase | |
| getPackageName() const | SBase | |
| getPackageVersion() const | SBase | |
| getParentSBMLObject() | SBase | |
| getParentSBMLObject() const | SBase | |
| getPlugin(const std::string &package) | SBase | |
| getPlugin(const std::string &package) const | SBase | |
| getPlugin(unsigned int n) | SBase | |
| getPlugin(unsigned int n) const | SBase | |
| getPrefix() const | SBase | |
| getResourceBiologicalQualifier(std::string resource) const | SBase | |
| getResourceModelQualifier(std::string resource) const | SBase | |
| getRole() const | SpeciesReferenceGlyph | |
| getRoleString() const | SpeciesReferenceGlyph | |
| getSBMLDocument() const | SBase | |
| getSBMLDocument() | SBase | |
| getSBOTerm() const | SBase | |
| getSBOTermAsURL() const | SBase | |
| getSBOTermID() const | SBase | |
| getSpeciesGlyphId() const | SpeciesReferenceGlyph | |
| getSpeciesReferenceId() const | SpeciesReferenceGlyph | |
| getTypeCode() const | SpeciesReferenceGlyph | virtual |
| getURI() const | SBase | |
| getUserData() const | SBase | |
| getVersion() const | SBase | |
| GraphicalObject(unsigned int level=LayoutExtension::getDefaultLevel(), unsigned int version=LayoutExtension::getDefaultVersion(), unsigned int pkgVersion=LayoutExtension::getDefaultPackageVersion()) | GraphicalObject | |
| GraphicalObject(LayoutPkgNamespaces *layoutns) | GraphicalObject | |
| GraphicalObject(LayoutPkgNamespaces *layoutns, const std::string &id) | GraphicalObject | |
| GraphicalObject(LayoutPkgNamespaces *layoutns, const std::string &id, double x, double y, double w, double h) | GraphicalObject | |
| GraphicalObject(LayoutPkgNamespaces *layoutns, const std::string &id, double x, double y, double z, double w, double h, double d) | GraphicalObject | |
| GraphicalObject(LayoutPkgNamespaces *layoutns, const std::string &id, const Point *p, const Dimensions *d) | GraphicalObject | |
| GraphicalObject(LayoutPkgNamespaces *layoutns, const std::string &id, const BoundingBox *bb) | GraphicalObject | |
| GraphicalObject(const XMLNode &node, unsigned int l2version=4) | GraphicalObject | |
| GraphicalObject(const GraphicalObject &source) | GraphicalObject | |
| hasValidLevelVersionNamespaceCombination() | SBase | |
| initDefaults() | SpeciesReferenceGlyph | |
| isPackageEnabled(const std::string &pkgName) const | SBase | |
| isPackageURIEnabled(const std::string &pkgURI) const | SBase | |
| isPkgEnabled(const std::string &pkgName) const | SBase | |
| isPkgURIEnabled(const std::string &pkgURI) const | SBase | |
| isSetAnnotation() const | SBase | |
| isSetCreatedDate() const | SBase | |
| isSetCurve() const | SpeciesReferenceGlyph | |
| isSetId() const | GraphicalObject | virtual |
| isSetIdAttribute() const | SBase | |
| isSetMetaId() const | SBase | |
| isSetMetaIdRef() const | GraphicalObject | virtual |
| isSetModelHistory() const | SBase | |
| isSetModifiedDate() const | SBase | |
| isSetName() const | SBase | virtual |
| isSetNotes() const | SBase | |
| isSetRole() const | SpeciesReferenceGlyph | |
| isSetSBOTerm() const | SBase | |
| isSetSpeciesGlyphId() const | SpeciesReferenceGlyph | |
| isSetSpeciesReferenceId() const | SpeciesReferenceGlyph | |
| isSetUserData() const | SBase | |
| matchesRequiredSBMLNamespacesForAddition(const SBase *sb) | SBase | |
| matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const | SBase | |
| matchesSBMLNamespaces(const SBase *sb) | SBase | |
| matchesSBMLNamespaces(const SBase *sb) const | SBase | |
| operator=(const SpeciesReferenceGlyph &source) | SpeciesReferenceGlyph | virtual |
| GraphicalObject::operator=(const GraphicalObject &source) | GraphicalObject | virtual |
| SBase::operator=(const SBase &rhs) | SBase | |
| read(const XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED) | SBase | |
| removeFromParentAndDelete() | SBase | virtual |
| removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true) | SBase | |
| renameMetaIdRefs(const std::string &oldid, const std::string &newid) | GraphicalObject | virtual |
| renameSIdRefs(const std::string &oldid, const std::string &newid) | SpeciesReferenceGlyph | virtual |
| renameUnitSIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
| replaceTopLevelAnnotationElement(const XMLNode *annotation) | SBase | |
| replaceTopLevelAnnotationElement(const std::string &annotation) | SBase | |
| setAnnotation(const XMLNode *annotation) | SBase | virtual |
| setAnnotation(const std::string &annotation) | SBase | virtual |
| setBoundingBox(const BoundingBox *bb) | GraphicalObject | |
| setCreatedDate(Date *date) | SBase | |
| setCurve(const Curve *curve) | SpeciesReferenceGlyph | |
| setElementText(const std::string &text) | SBase | protectedvirtual |
| setId(const std::string &sid) | GraphicalObject | virtual |
| setIdAttribute(const std::string &sid) | SBase | virtual |
| setMetaId(const std::string &metaid) | SBase | |
| setMetaIdRef(const std::string &metaid) | GraphicalObject | virtual |
| setModelHistory(ModelHistory *history) | SBase | |
| setName(const std::string &name) | SBase | virtual |
| setNamespaces(XMLNamespaces *xmlns) | SBase | |
| setNotes(const XMLNode *notes) | SBase | |
| setNotes(const std::string ¬es, bool addXHTMLMarkup=false) | SBase | |
| setRole(const std::string &role) | SpeciesReferenceGlyph | |
| setRole(SpeciesReferenceRole_t role) | SpeciesReferenceGlyph | |
| setSBOTerm(int value) | SBase | virtual |
| setSBOTerm(const std::string &sboid) | SBase | virtual |
| setSpeciesGlyphId(const std::string &speciesGlyphId) | SpeciesReferenceGlyph | |
| setSpeciesReferenceId(const std::string &id) | SpeciesReferenceGlyph | |
| setUserData(void *userData) | SBase | |
| SpeciesReferenceGlyph(unsigned int level=LayoutExtension::getDefaultLevel(), unsigned int version=LayoutExtension::getDefaultVersion(), unsigned int pkgVersion=LayoutExtension::getDefaultPackageVersion()) | SpeciesReferenceGlyph | |
| SpeciesReferenceGlyph(LayoutPkgNamespaces *layoutns) | SpeciesReferenceGlyph | |
| SpeciesReferenceGlyph(LayoutPkgNamespaces *layoutns, const std::string &sid, const std::string &speciesGlyphId, const std::string &speciesReferenceId, SpeciesReferenceRole_t role) | SpeciesReferenceGlyph | |
| SpeciesReferenceGlyph(const XMLNode &node, unsigned int l2version=4) | SpeciesReferenceGlyph | |
| SpeciesReferenceGlyph(const SpeciesReferenceGlyph &source) | SpeciesReferenceGlyph | |
| toSBML() | SBase | |
| toXML() const | SpeciesReferenceGlyph | virtual |
| toXMLNode() | SBase | |
| unsetAnnotation() | SBase | |
| unsetCreatedDate() | SBase | |
| unsetCVTerms() | SBase | |
| unsetId() | GraphicalObject | virtual |
| unsetIdAttribute() | SBase | |
| unsetMetaId() | SBase | |
| unsetMetaIdRef() | GraphicalObject | virtual |
| unsetModelHistory() | SBase | |
| unsetModifiedDates() | SBase | |
| unsetName() | SBase | virtual |
| unsetNotes() | SBase | |
| unsetSBOTerm() | SBase | |
| unsetUserData() | SBase | |
| ~GraphicalObject() | GraphicalObject | virtual |
| ~SBase() | SBase | virtual |
| ~SpeciesReferenceGlyph() | SpeciesReferenceGlyph | virtual |