File List

Here is a list of all files with brief descriptions:

AlgebraicRule.cpp	Implementations of AlgebraicRule_t
AlgebraicRule.h	Definitions of AlgebraicRule_t
AssignmentRule.cpp	Implementations of AssignmentRule_t
AssignmentRule.h	Definitions of AssignmentRule_t
Association.cpp	Implementation of Association_t, the contents of a GeneAssociation_t
Association.h	Definition of Association_t, the contents of a GeneAssociation_t
ASTBasePlugin.cpp
ASTBasePlugin.h
ASTNode.cpp	Abstract Syntax Tree (AST) for representing formula trees
ASTNode.h	Abstract Syntax Tree (AST) for representing formula trees
ASTNodeType.h	Enumeration for Abstract Syntax Tree (AST)
BindingSiteSpeciesType.cpp	: Implementation of the BindingSiteSpeciesType_t class
BindingSiteSpeciesType.h	: Implementation of the BindingSiteSpeciesType_t class
BoundingBox.cpp	Implementation of BoundingBox_t for SBML Layout_t
BoundingBox.h	Definition of BoundingBox_t for SBML Layout_t
CallbackRegistry.cpp
CallbackRegistry.h
CobraToFbcConverter.cpp	Implementation of a cobra 2 fbc converter
CobraToFbcConverter.h	Definition of a cobra 2 fbc converter
ColorDefinition.cpp	Implementation of the ColorDefinition_t class
ColorDefinition.h	Definition of the ColorDefinition_t class
common-documentation.h	Common text fragments used throughout libSBML's code documentation
common-sbmlerror-codes.h
common.h	Common functions and macros for C and C++
Compartment.cpp	Implementations of Compartment_t and ListOfCompartments_t
Compartment.h	Definitions of Compartment_t and ListOfCompartments_t
CompartmentGlyph.cpp	Implementation of CompartmentGlyph_t for SBML Layout_t
CompartmentGlyph.h	Definition of CompartmentGlyph_t for SBML Layout_t
CompartmentReference.cpp	: Implementation of the CompartmentReference_t class
CompartmentReference.h	: Implementation of the CompartmentReference_t class
CompartmentType.cpp	Implementation of CompartmentType_t and ListOfCompartmentTypes_t
CompartmentType.h	Definitions of CompartmentType_t and ListOfCompartmentTypes_t
CompBase.cpp	Implementation of CompBase_t, the base class of extension entities plugged in SBase_t derived classes in the SBML Core package
CompBase.h	Definition of CompBase_t, the base class of extension entities plugged in SBase_t derived classes in the SBML Core package
CompConsistencyValidator.cpp
CompConsistencyValidator.h
CompExtension.cpp	Implementation of CompExtension_t, the core module of comp package
CompExtension.h	Definition of CompExtension_t, the core module of comp package
CompExtensionTypes.h	Include all SBML types of Comp extension in a single header file
CompFlatteningConverter.cpp	Implementation of a first flattening converter
CompFlatteningConverter.h	Definition of a first flattening converter
CompIdentifierConsistencyValidator.cpp
CompIdentifierConsistencyValidator.h
CompModelPlugin.cpp	Implementation of CompModelPlugin_t, the plugin class of comp package for the SBase_t element
CompModelPlugin.h	Definition of CompModelPlugin_t, the plugin class of comp package for the Model_t element
CompSBasePlugin.cpp	Implementation of CompSBasePlugin_t, the plugin class of comp package for the SBase_t element
CompSBasePlugin.h	Definition of CompSBasePlugin_t, the plugin class of comp package for the Model_t element
CompSBMLDocumentPlugin.cpp	Implementation of CompSBMLDocumentPlugin_t, the plugin class of comp package for the SBase_t element
CompSBMLDocumentPlugin.h	Definition of CompSBMLDocumentPlugin_t, the plugin class of comp package for the Model_t element
CompSBMLError.h	Represents SBML errors and other diagnostics
CompSBMLErrorTable.h	Represents SBML errors and other diagnostics
CompUnitConsistencyValidator.cpp
CompUnitConsistencyValidator.h
CompValidator.cpp
CompValidator.h	Base class for SBML CompValidators
ConsistencyValidator.cpp
ConsistencyValidator.h
Constraint.cpp	Implementations of Constraint_t and ListOfConstraints_t
Constraint.h	Definitions of Constraint_t and ListOfConstraints_t
ConstraintMacros.h	Defines the validator constraint "language"
ConversionOption.cpp	Implementation of ConversionOption_t, the class encapsulating conversion options
ConversionOption.h	Definition of ConversionOption_t, the class encapsulating conversion options
ConversionProperties.cpp	Implemenentation of ConversionProperties_t, the class encapsulating conversion configuration
ConversionProperties.h	Definition of ConversionProperties_t, the class encapsulating conversion configuration
CubicBezier.cpp	Implementation of CubicBezier_t for SBML Layout_t
CubicBezier.h	Definition of CubicBezier_t for SBML Layout_t
Curve.cpp	Implementation of Curve_t for SBML Layout_t
Curve.h	Definition of Curve_t for SBML Layout_t
CVTerm.cpp	CVTerm_t I/O
CVTerm.h	Definition of a CVTerm_t class for adding annotations to a Model_t
Date.cpp	Date_t I/O
Date.h	Date_t I/O
DefaultTerm.cpp	Implementation of the DefaultTerm_t class
DefaultTerm.h	Implementation of the DefaultTerm_t class
DefaultValues.cpp	Implementation of the DefaultValues_t class
DefaultValues.h	Definition of the DefaultValues_t class
DefinitionURLRegistry.cpp
DefinitionURLRegistry.h	Implementation of DefinitionURLRegistry_t, a registry of available DefinitionURLs
Delay.cpp	Implementation of Delay_t
Delay.h	Definition of Delay_t
Deletion.cpp	Implementation of Deletion_t, the SBaseRef_t derived class of deletions package
Deletion.h	Definition of Deletion_t, the SBase_t derived class of deletions package
Dimensions.cpp	Implementation of Dimensions_t for SBML Layout_t
Dimensions.h	Definition of Dimensions_t for SBML Layout_t
ElementFilter.cpp
ElementFilter.h	Base class of element filters
Ellipse.cpp	Implementation of the Ellipse_t class
Ellipse.h	Definition of the Ellipse_t class
Event.cpp	Implementations of Event_t and ListOfEvents_t
Event.h	Definitions of Event_t and ListOfEvents_t
EventAssignment.cpp	Implementation of EventAssignment_t
EventAssignment.h	Definition of EventAssignment_t and ListOfEventAssignments_t
ExpatAttributes.cpp
ExpatAttributes.h
ExpatHandler.cpp
ExpatHandler.h
ExpatParser.cpp
ExpatParser.h
ExpectedAttributes.cpp	Implementation of ExpectedAttributes, the class allowing the specification of attributes to expect
ExpectedAttributes.h	Definition of ExpectedAttributes, the class allowing the specification of attributes to expect
extern.h	Definitions of LIBSBML_EXTERN and related things
ExternalModelDefinition.cpp	Implementation of ExternalModelDefinition_t, the SBase_t-derived class of the comp package
ExternalModelDefinition.h	Definition of ExternalModelDefinition_t, the SBase_t derived class of the comp package
FbcAnd.cpp	Implementation of the FbcAnd_t class
FbcAnd.h	Implementation of the FbcAnd_t class
FbcAssociation.cpp	Implementation of the FbcAssociation_t class
FbcAssociation.h	Implementation of the FbcAssociation_t class
FbcConsistencyValidator.cpp
FbcConsistencyValidator.h
FbcExtension.cpp	Implementation of FbcExtension_t, the core module of fbc package
FbcExtension.h	Definition of FbcExtension_t, the core module of fbc package
FbcExtensionTypes.h	Includes all SBML types of the fbc package extension in a single header file
fbcfwd.h	Implementation of the fbcfwd class
FbcIdentifierConsistencyValidator.cpp
FbcIdentifierConsistencyValidator.h
FbcModelPlugin.cpp	Implementation of FbcModelPlugin_t, the plugin class of the fbc package for the Model_t element
FbcModelPlugin.h	Definition of FbcModelPlugin_t, the plugin class of fbc package for the Model_t element
FbcOr.cpp	Implementation of the FbcOr_t class
FbcOr.h	Implementation of the FbcOr_t class
FbcReactionPlugin.cpp	Implementation of the FbcReactionPlugin_t class
FbcReactionPlugin.h	Implementation of the FbcReactionPlugin_t class
FbcSBMLDocumentPlugin.cpp	Implementation of the FbcSBMLDocumentPlugin_t class
FbcSBMLDocumentPlugin.h	Implementation of the FbcSBMLDocumentPlugin_t class
FbcSBMLError.h	Represents SBML errors and other diagnostics
FbcSBMLErrorTable.h	Represents SBML errors and other diagnostics
FbcSpeciesPlugin.cpp	Implementation of FbcSpeciesPlugin_t, the plugin class of the fbc package for the Species_t element
FbcSpeciesPlugin.h	Definition of FbcSpeciesPlugin_t, the plugin class of the fbc package for the Species_t element
FbcToCobraConverter.cpp	Implementation of a fbc 2 cobra converter
FbcToCobraConverter.h	Definition of a fbc 2 cobra converter
FbcV1ToV2Converter.cpp	Implementation of a fbc v1 to fbc v2 converter
FbcV1ToV2Converter.h	Definition of a fbc v1 to fbc v2 converter
FbcV2ToV1Converter.cpp	Implementation of a fbc v2 to fbc v1 converter
FbcV2ToV1Converter.h	Definition of a fbc v2 to fbc v1 converter
FbcValidator.cpp	Base class for SBML Validators
FbcValidator.h	Base class for SBML CompValidators
FluxBound.cpp	Implementation of FluxBound_t, the SBase_t derived class of the fbc package
FluxBound.h	Definition of FluxBound_t, the SBase_t derived class of the fbc package
FluxObjective.cpp	Implementation of the FluxObjective_t class
FluxObjective.h	Definition of FluxObjective_t, the SBase_t derived class of the fbc package
FormulaFormatter.cpp	Formats an AST formula tree as an SBML formula string
FormulaFormatter.h	Formats an AST formula tree as an SBML formula string
FormulaParser.cpp	Parses an SBML formula string into an AST
FormulaParser.h	Parses an SBML formula string into an AST
FormulaTokenizer.cpp	Tokenizes an SBML formula string
FormulaTokenizer.h	Tokenizes an SBML formula string
FunctionDefinition.cpp	Implementation of FunctionDefinition_t and ListOfFunctionDefinitions_t
FunctionDefinition.h	Definitions of FunctionDefinition_t and ListOfFunctionDefinitions_t
FunctionTerm.cpp	Implementation of the FunctionTerm_t class
FunctionTerm.h	Implementation of the FunctionTerm_t class
GeneAssociation.cpp	Implementation of GeneAssociation_t, the SBase_t derived class of the fbc package
GeneAssociation.h	Definition of GeneAssociation_t, the SBase_t derived class of the fbc package
GeneProduct.cpp	Implementation of the GeneProduct_t class
GeneProduct.h	Implementation of the GeneProduct_t class
GeneProductAssociation.cpp	Implementation of the GeneProductAssociation_t class
GeneProductAssociation.h	Implementation of the GeneProductAssociation_t class
GeneProductRef.cpp	Implementation of the GeneProductRef_t class
GeneProductRef.h	Implementation of the GeneProductRef_t class
GeneralGlyph.cpp	Implementation of GeneralGlyph_t for SBML Layout_t
GeneralGlyph.h	Definition of GeneralGlyph_t for SBML Layout_t
GlobalRenderInformation.cpp	Class for the storage of global render information
GlobalRenderInformation.h	Definition of the GlobalRenderInformation_t class
GlobalStyle.cpp	Implementation of the GlobalStyle_t class
GlobalStyle.h	Definition of the GlobalStyle_t class
GradientBase.cpp	Abstract base class for gradient objects
GradientBase.h	Abstract base class for gradient definitions
GradientStop.cpp	Class representing a stop in a gradient definition
GradientStop.h	Class for representing a stop in a gradient definition
GraphicalObject.cpp	Implementation of GraphicalObject_t for SBML Layout_t
GraphicalObject.h	Definition of GraphicalObject_t for SBML Layout_t
GraphicalPrimitive1D.cpp	Abstract base class for graphical 1D objects
GraphicalPrimitive1D.h	Definition of the GraphicalPrimitive1D_t class
GraphicalPrimitive2D.cpp	Implementation of the GraphicalPrimitive2D_t class
GraphicalPrimitive2D.h	Definition of the GraphicalPrimitive2D_t class
Group.cpp	Implementation of the Group_t class
Group.h	Definition of the Group_t class
GroupsConsistencyValidator.cpp
GroupsConsistencyValidator.h
GroupsExtension.cpp	Implementation of GroupsExtension_t
GroupsExtension.h	Definition of GroupsExtension_t
GroupsExtensionTypes.h	Definition of GroupsExtensionTypes
groupsfwd.h	Definition of groupsfwd
GroupsIdentifierConsistencyValidator.cpp
GroupsIdentifierConsistencyValidator.h
GroupsModelPlugin.cpp	Implementation of the GroupsModelPlugin_t class
GroupsModelPlugin.h	Definition of the GroupsModelPlugin_t class
GroupsSBMLDocumentPlugin.cpp	Implementation of the GroupsSBMLDocumentPlugin_t class
GroupsSBMLDocumentPlugin.h	Definition of the GroupsSBMLDocumentPlugin_t class
GroupsSBMLError.h	Definition of the GroupsSBMLError class
GroupsSBMLErrorTable.h	Definition of the GroupsSBMLErrorTable class
GroupsValidator.cpp	Definition of GroupsValidator_t
GroupsValidator.h	Definition of GroupsValidator_t
IdentifierConsistencyValidator.cpp
IdentifierConsistencyValidator.h
IdentifierTransformer.cpp
IdentifierTransformer.h
IdFilter.cpp
IdFilter.h
IdList.cpp
IdList.h
Image.cpp	Implementation of the Image_t class
Image.h	Definition of the Image_t class
InitialAssignment.cpp	Implementation of InitialAssignment_t and ListOfInitialAssignments_t
InitialAssignment.h	Definitions of InitialAssignment_t and ListOfInitialAssignments_t
Input.cpp	Implementation of the Input_t class
Input.h	Implementation of the Input_t class
InSpeciesTypeBond.cpp	: Implementation of the InSpeciesTypeBond_t class
InSpeciesTypeBond.h	: Implementation of the InSpeciesTypeBond_t class
InternalConsistencyValidator.cpp
InternalConsistencyValidator.h
IntraSpeciesReaction.cpp	: Implementation of the IntraSpeciesReaction_t class
IntraSpeciesReaction.h	: Implementation of the IntraSpeciesReaction_t class
ISBMLExtensionNamespaces.cpp
ISBMLExtensionNamespaces.h
KineticLaw.cpp	Implementation of KineticLaw_t
KineticLaw.h	Definition of KineticLaw_t
L1CompatibilityValidator.cpp
L1CompatibilityValidator.h
L2v1CompatibilityValidator.cpp
L2v1CompatibilityValidator.h
L2v2CompatibilityValidator.cpp
L2v2CompatibilityValidator.h
L2v3CompatibilityValidator.cpp
L2v3CompatibilityValidator.h
L2v4CompatibilityValidator.cpp
L2v4CompatibilityValidator.h
L3FormulaFormatter.cpp	Formats an AST formula tree as an SBML L3 formula string
L3FormulaFormatter.h	Formats an L3 AST formula tree as an SBML formula string
L3Parser.cpp
L3Parser.h	Definition of the level 3 infix-to-mathml parser C functions
L3ParserSettings.cpp	Definition of the level 3 infix-to-mathml parser settings
L3ParserSettings.h	Definition of the level 3 infix-to-mathml parser settings
L3v1CompatibilityValidator.cpp
L3v1CompatibilityValidator.h
L3v2CompatibilityValidator.cpp
L3v2CompatibilityValidator.h
Layout.cpp	Implementation of Layout_t for SBML Layout_t
Layout.h	Definition of Layout_t for SBML Layout_t
LayoutAnnotation.cpp	Layout_t annotation I/O
LayoutAnnotation.h	Layout_t annotation I/O
LayoutConsistencyValidator.cpp
LayoutConsistencyValidator.h
LayoutExtension.cpp	Implementation of LayoutExtension_t, the core module of layout package
LayoutExtension.h	Definition of LayoutExtension_t, the core module of layout package
LayoutExtensionTypes.h	Include all SBML types of layout extension in a single header file
layoutfwd.h	C Structure declarations for SBML Layout_t
LayoutIdentifierConsistencyValidator.cpp
LayoutIdentifierConsistencyValidator.h
LayoutModelPlugin.cpp	Implementation of LayoutModelPlugin_t, the plugin class of layout package for the Model_t element
LayoutModelPlugin.h	Definition of LayoutModelPlugin_t, the plugin class of layout package for Model_t element
LayoutSBMLDocumentPlugin.cpp	Implementation of the LayoutSBMLDocumentPlugin_t class
LayoutSBMLDocumentPlugin.h	Implementation of the LayoutSBMLDocumentPlugin_t class
LayoutSBMLError.h	Implementation of the LayoutSBMLError class
LayoutSBMLErrorTable.h
LayoutSpeciesReferencePlugin.cpp	Implementation of LayoutSpeciesReferencePlugin_t, the plugin object of layout package (Level2) for the SpeciesReference_t and ModifierSpeciesReference_t elements
LayoutSpeciesReferencePlugin.h	Definition of LayoutSpeciesReferencePlugin_t, the plugin class of layout package (Level2) for the SpeciesReference_t and ModifierSpeciesReference_t elements
LayoutUtilities.cpp	Implementation of some methods used by many of the layout files
LayoutUtilities.h	Definition of LayoutUtilities for SBML Layout_t
LayoutValidator.cpp	Implementation of the LayoutValidator_t class
LayoutValidator.h	Implementation of the LayoutValidator_t class
libsbml-config-common.h	Configuration variables
libsbml-config.h	Decides whether to #include Unix or Windows configuration variables
libsbml-namespace.h	Defines C++ namespace of libSBML
libsbml-package.h	Definitions of the PACKAGE_ variables
libsbml-version.cpp	Define libSBML version numbers for access from client software
libsbml-version.h	Define libSBML version numbers for access from client software
LibXMLAttributes.cpp
LibXMLAttributes.h
LibXMLHandler.cpp
LibXMLHandler.h
LibXMLNamespaces.cpp	Extracts XML namespace declarations from LibXML prefix/URI pairs
LibXMLNamespaces.h	Extracts XML namespace declarations from LibXML prefix/URI pairs
LibXMLParser.cpp
LibXMLParser.h
LibXMLTranscode.cpp
LibXMLTranscode.h
LinearGradient.cpp	Implementation of the LinearGradient_t class
LinearGradient.h	Definition of the LinearGradient_t class
LineEnding.cpp	Class representing line endings,e.g
LineEnding.h	Class representing line endings, e.g
LineSegment.cpp	Implementation of LineSegment_t for SBML Layout_t
LineSegment.h	Definition of LineSegment_t for SBML Layout_t
List.cpp	Simple, generic list class
List.h	Simple, generic list utility class
ListOf.cpp	Wraps List_t and inherits from SBase_t
ListOf.h
ListOfColorDefinitions.cpp	Implementation of the ListOfColorDefinitions_t class
ListOfColorDefinitions.h	Definition of the ListOfColorDefinitions_t class
ListOfCurveElements.cpp	Storage class for curve elements
ListOfCurveElements.h	Definition of the ListOfCurveElements_t class
ListOfDeletions.cpp	Implementation of ListOfDeletions_t
ListOfDeletions.h	Definition of ListOfDeletions_t, the SBase_t derived class of deletions package
ListOfDrawables.cpp	Implementation of the ListOfDrawables_t class
ListOfDrawables.h	Definition of the ListOfDrawables_t class
ListOfExternalModelDefinitions.cpp	Implementation of ListOfExternalModelDefinitions_t
ListOfExternalModelDefinitions.h	Definition of ListOfExternalModelDefinitions_t, the SBase_t derived class of the Hierarchial Model Defintions package
ListOfGlobalRenderInformation.cpp	Implementation of the ListOfGlobalRenderInformation_t class
ListOfGlobalRenderInformation.h	Definition of the ListOfGlobalRenderInformation_t class
ListOfGlobalStyles.cpp	Implementation of the ListOfGlobalStyles_t class
ListOfGlobalStyles.h	Definition of the ListOfGlobalStyles_t class
ListOfGradientDefinitions.cpp	Implementation of the ListOfGradientDefinitions_t class
ListOfGradientDefinitions.h	Definition of the ListOfGradientDefinitions_t class
ListOfGradientStops.cpp	Implementation of the ListOfGradientStops_t class
ListOfGradientStops.h	Definition of the ListOfGradientStops_t class
ListOfGroups.cpp	Implementation of the ListOfGroups_t class
ListOfGroups.h	Definition of the ListOfGroups_t class
ListOfLineEndings.cpp	Implementation of the ListOfLineEndings_t class
ListOfLineEndings.h	Definition of the ListOfLineEndings_t class
ListOfLocalRenderInformation.cpp	Implementation of the ListOfLocalRenderInformation_t class
ListOfLocalRenderInformation.h	Definition of the ListOfLocalRenderInformation_t class
ListOfLocalStyles.cpp	Implementation of the ListOfLocalStyles_t class
ListOfLocalStyles.h	Definition of the ListOfLocalStyles_t class
ListOfMembers.cpp	Implementation of the ListOfMembers_t class
ListOfMembers.h	Definition of the ListOfMembers_t class
ListOfModelDefinitions.cpp
ListOfModelDefinitions.h	Definition of ListOfModelDefinitions_t, the SBase_t derived class of modelDefinitions package
ListOfPorts.cpp	Implementation of ListOfPorts_t
ListOfPorts.h	Definition of ListOfPorts_t, the SBase_t derived class of ports package
ListOfReplacedElements.cpp
ListOfReplacedElements.h	Definition of ListOfReplacedElements_t, the SBase_t derived class of replacedElements package
ListOfSubmodels.cpp	Implementation of ListOfSubmodels_t
ListOfSubmodels.h	Definition of ListOfSubmodels_t, the SBase_t derived class of submodels package
LocalParameter.cpp	Implementations of LocalLocalParameter and ListOfLocalLocalParameters
LocalParameter.h	Definitions of LocalParameter_t and ListOfLocalParameters_t
LocalRenderInformation.cpp	Implementation of the LocalRenderInformation_t class
LocalRenderInformation.h	Definition of the LocalRenderInformation_t class
LocalStyle.cpp	Class for representing a local style
LocalStyle.h	Definition of the LocalStyle_t class
MathFilter.cpp
MathFilter.h
MathML.cpp	Utilities for reading and writing MathML to/from text strings
MathML.h	Utilities for reading and writing MathML to/from text strings
MathMLConsistencyValidator.cpp
MathMLConsistencyValidator.h
Member.cpp	Implementation of the Member_t class
Member.h	Definition of the Member_t class
memory.c
memory.h
MetaIdFilter.cpp
MetaIdFilter.h
Model.cpp	Implementation of Model_t
Model.h	Definition of Model_t
ModelCreator.cpp	ModelCreator_t I/O
ModelCreator.h	ModelCreator_t I/O
ModelDefinition.cpp	Implementation of ModelDefinition_t, the Subelement derived class of modelDefinitions package
ModelDefinition.h	Definition of ModelDefinition_t, the SBase_t derived class of the comp package
ModelHistory.cpp	ModelHistory_t I/O
ModelHistory.h	ModelHistory_t I/O
ModelingPracticeValidator.cpp
ModelingPracticeValidator.h
ModifierSpeciesReference.cpp	Implementation of ModifierSpeciesReference_t
ModifierSpeciesReference.h	Definitions of ModifierSpeciesReference_t
MultiASTPlugin.cpp	Implementation of MultiASTPlugin_t, the plugin class of multi package for the AST element
MultiASTPlugin.h	Definition of MultiASTPlugin_t, the plugin class of multi package for the AST element
MultiCompartmentPlugin.cpp	: Implementation of the MultiCompartmentPlugin_t class
MultiCompartmentPlugin.h	: Implementation of the MultiCompartmentPlugin_t class
MultiConsistencyValidator.cpp
MultiConsistencyValidator.h
MultiExtension.cpp	: Implementation of the MultiExtension_t class
MultiExtension.h	: Implementation of the MultiExtension_t class
MultiExtensionTypes.h	: Implementation of the MultiExtensionTypes class
multifwd.h	: Implementation of the multifwd class
MultiIdentifierConsistencyValidator.cpp
MultiIdentifierConsistencyValidator.h
MultiListOfReactionsPlugin.cpp	: Implementation of the MultiListOfReactionsPlugin_t class
MultiListOfReactionsPlugin.h	: Implementation of the MultiListOfReactionsPlugin_t class
MultiMathMLConsistencyValidator.cpp
MultiMathMLConsistencyValidator.h
MultiModelPlugin.cpp	: Implementation of the MultiModelPlugin_t class
MultiModelPlugin.h	: Implementation of the MultiModelPlugin_t class
MultiSBMLDocumentPlugin.cpp	: Implementation of the MultiSBMLDocumentPlugin_t class
MultiSBMLDocumentPlugin.h	: Implementation of the MultiSBMLDocumentPlugin_t class
MultiSBMLError.h	: Implementation of the MultiSBMLError class
MultiSBMLErrorTable.h	: Implementation of the MultiSBMLErrorTable class
MultiSimpleSpeciesReferencePlugin.cpp	: Implementation of the MultiSimpleSpeciesReferencePlugin_t class
MultiSimpleSpeciesReferencePlugin.h	: Implementation of the MultiSimpleSpeciesReferencePlugin_t class
MultiSpeciesPlugin.cpp	: Implementation of the MultiSpeciesPlugin_t class
MultiSpeciesPlugin.h	: Implementation of the MultiSpeciesPlugin_t class
MultiSpeciesReferencePlugin.cpp	: Implementation of the MultiSpeciesReferencePlugin_t class
MultiSpeciesReferencePlugin.h	: Implementation of the MultiSpeciesReferencePlugin_t class
MultiSpeciesType.cpp	: Implementation of the MultiSpeciesType_t class
MultiSpeciesType.h	: Implementation of the MultiSpeciesType_t class
MultiValidator.cpp	: Implementation of the MultiValidator_t class
MultiValidator.h	: Implementation of the MultiValidator_t class
Objective.cpp	Implementation of the Objective_t class
Objective.h	Definition of Objective_t, the SBase_t derived class of the fbc package
operationReturnValues.cpp	Enumeration of values returned by operations within libSBML
operationReturnValues.h	Enumeration of values returned by operations within libSBML
Output.cpp	Implementation of the Output_t class
Output.h	Implementation of the Output_t class
OutwardBindingSite.cpp	: Implementation of the OutwardBindingSite_t class
OutwardBindingSite.h	: Implementation of the OutwardBindingSite_t class
OverdeterminedValidator.cpp
OverdeterminedValidator.h
Parameter.cpp	Implementations of Parameter_t and ListOfParameters_t
Parameter.h	Definitions of Parameter_t and ListOfParameters_t
Point.cpp	Implementation of Point_t for SBML Layout_t
Point.h	Definition of Point_t for SBML Layout_t
Polygon.cpp	Implementation of the Polygon_t class
Polygon.h	Class representing a polygon
Port.cpp	Implementation of Port_t, the SBase_t-derived class of the comp package
Port.h	Definition of Port_t, the SBase_t derived class of the comp package
PossibleSpeciesFeatureValue.cpp	: Implementation of the PossibleSpeciesFeatureValue_t class
PossibleSpeciesFeatureValue.h	: Implementation of the PossibleSpeciesFeatureValue_t class
PrefixTransformer.cpp
PrefixTransformer.h
Priority.cpp	Implementation of Priority_t
Priority.h	Definition of Priority_t
QualConsistencyValidator.cpp
QualConsistencyValidator.h
QualExtension.cpp	Implementation of QualExtension_t, the core module of qual package
QualExtension.h	Definition of QualExtension_t, the core module of qual package
QualExtensionTypes.h	Include all SBML types of qual extension in a single header file
qualfwd.h	SBML Qual C structure declarations
QualIdentifierConsistencyValidator.cpp
QualIdentifierConsistencyValidator.h
QualitativeSpecies.cpp	Implementation of the QualitativeSpecies_t class
QualitativeSpecies.h	Implementation of the QualitativeSpecies_t class
QualMathConsistencyValidator.cpp
QualMathConsistencyValidator.h
QualModelPlugin.cpp	Implementation of QualModelPlugin_t, the plugin class of qual package for the Model_t element
QualModelPlugin.h	Definition of QualModelPlugin_t, the plugin class of qual package for the Model_t element
QualSBMLDocumentPlugin.cpp	Implementation of QualSBMLDocumentPlugin_t, the plugin class of qual package for the SBase_t element
QualSBMLDocumentPlugin.h	Implementation of the QualSBMLDocumentPlugin_t class
QualSBMLError.h	Represents SBML errors and other diagnostics
QualSBMLErrorTable.h	Represents SBML errors and other diagnostics
QualValidator.cpp	Base class for SBML Validators
QualValidator.h	Implementation of the QualValidator_t class
RadialGradient.cpp	Implementation of the RadialGradient_t class
RadialGradient.h	Definition of the RadialGradient_t class
RateRule.cpp	Implementations of RateRule_t
RateRule.h	Definitions of RateRule_t
RDFAnnotation.h	RDFAnnotation I/O
RDFAnnotationParser.cpp	RDFAnnotation I/O
RDFAnnotationParser.h
Reaction.cpp	Implementations of Reaction_t and ListOfReactions_t
Reaction.h	Definitions of Reaction_t and ListOfReactions_t
ReactionGlyph.cpp	Implementation of ReactionGlyph_t for SBML Layout_t
ReactionGlyph.h	Definition of ReactionGlyph_t for SBML Layout_t
Rectangle.cpp	Implementation of the Rectangle_t class
Rectangle.h	Definition of the Rectangle_t class
ReferenceGlyph.cpp	Implementation of ReferenceGlyph_t for SBML Layout_t
ReferenceGlyph.h	Definition of ReferenceGlyph_t for SBML Layout_t
RegisterConverters.cpp	Registers all available converters
RegisterExtensions.h
RelAbsVector.cpp	Class for representing coordinates that can have a relative and an absolute part
RelAbsVector.h	Definition of the RelAbsVector_t class
RenderConsistencyValidator.cpp
RenderConsistencyValidator.h
RenderCubicBezier.cpp	Implementation of the RenderCubicBezier_t class
RenderCubicBezier.h	Definition of the RenderCubicBezier_t class
RenderCurve.cpp	Implementation of the RenderCurve_t class
RenderCurve.h	Definition of the RenderCurve_t class
RenderExtension.cpp	Implementation of RenderExtension_t, the core module of the render package
RenderExtension.h	Definition of RenderExtension_t, the core module of the render package
RenderExtensionTypes.h	Definition of RenderExtensionTypes
renderfwd.h	Definition of renderfwd
RenderGraphicalObjectPlugin.cpp	Implementation of RenderGraphicalObjectPlugin_t, the plugin class of the render package for the GraphicalObject_t element
RenderGraphicalObjectPlugin.h	Definition of RenderGraphicalObjectPlugin_t, the plugin class of the render package for the GraphicalObject_t element
RenderGroup.cpp	Implementation of the RenderGroup_t class
RenderGroup.h	Definition of the RenderGroup_t class
RenderIdentifierConsistencyValidator.cpp
RenderIdentifierConsistencyValidator.h
RenderInformationBase.cpp	Implementation of the RenderInformationBase_t class
RenderInformationBase.h	Definition of the RenderInformationBase_t class
RenderLayoutConverter.cpp	Simple converter to convert Layout_t + Render from l2 to L3 and vice versa
RenderLayoutConverter.h	Simple converter to convert Layout_t + Render from l2 to L3 and vice versa
RenderLayoutPlugin.cpp	Implementation of RenderLayoutPlugin_t, the plugin class of the fbc package for the Model_t element
RenderLayoutPlugin.h	Definition of RenderLayoutPlugin_t, the plugin class of fbc package for the Model_t element
RenderListOfLayoutsPlugin.cpp	Implementation of RenderListOfLayoutsPlugin_t, the plugin class of the fbc package for the Model_t element
RenderListOfLayoutsPlugin.h	Definition of RenderListOfLayoutsPlugin_t, the plugin class of fbc package for the Model_t element
RenderPoint.cpp	Implementation of the RenderPoint_t class
RenderPoint.h	Definition of the RenderPoint_t class
RenderSBMLDocumentPlugin.cpp	Implementation of the RenderSBMLDocumentPlugin_t class
RenderSBMLDocumentPlugin.h	Definition of the RenderSBMLDocumentPlugin_t class
RenderSBMLError.h	Definition of the RenderSBMLError class
RenderSBMLErrorTable.h	Definition of the RenderSBMLErrorTable class
RenderUtilities.cpp	Implementation of RenderUtilities, a class of utility functions for the render package
RenderUtilities.h	Definition of RenderUtilities, a class of utility functions for the render package
RenderValidator.cpp	Definition of RenderValidator_t
RenderValidator.h	Definition of RenderValidator_t
ReplacedBy.cpp	Implementation of ReplacedBy_t, the SBaseRef_t derived class of the comp package
ReplacedBy.h	Definition of ReplacedBy_t, the Replacing_t-derived class of the comp package
ReplacedElement.cpp	Implementation of ReplacedElement_t, the Subelement derived class of replacedElements package
ReplacedElement.h	Definition of ReplacedElement_t, the SBase_t derived class of replacedElements package
Replacing.cpp	Implementation of Replacing_t, the SBaseRef_t derived class of Replacings package
Replacing.h	Definition of Replacing_t, the SBaseRef_t-derived class of the comp package
Rule.cpp	Implementations of Rule_t and ListOfRules_t
Rule.h	Definitions of Rule_t and ListOfRules_t
SBase.cpp	Implementation of SBase_t, the base object of all SBML objects
SBase.h	Definition of SBase_t, the base object of all SBML objects
SBaseExtensionPoint.cpp
SBaseExtensionPoint.h	Implementation of SBaseExtensionPoint_t
SBasePlugin.cpp	Implementation of SBasePlugin_t, the base class of extension entities plugged in SBase_t derived classes in the SBML Core package
SBasePlugin.h	Definition of SBasePlugin_t, the base class of extension entities plugged in SBase_t derived classes in the SBML Core package
SBasePluginCreator.h	Template class for SBasePlugin_t-based classes
SBasePluginCreatorBase.cpp	Implementation of SBasePluginCreatorBase_t, the base class of SBasePlugin_t creator classes
SBasePluginCreatorBase.h	Definition of SBasePluginCreatorBase_t, the base class of SBasePlugin_t creator classes
SBaseRef.cpp	Implementation of SBaseRef_t, the SBase_t-derived class of the comp package
SBaseRef.h	Definition of SBaseRef_t, the SBase_t derived class of the comp package
SBMLConstructorException.cpp	Implementation of SBMLConstructorException_t, the exception class for constructor exceptions
SBMLConstructorException.h	Definition of SBMLConstructorException_t, the exception class for constructor exceptions
SBMLConvert.cpp	Performs conversion between SBML levels
SBMLConverter.cpp	Implementation of SBMLConverter_t, the base class of package extensions
SBMLConverter.h	Definition of SBMLConverter_t, the base class for SBML conversion
SBMLConverterRegister.h
SBMLConverterRegistry.cpp
SBMLConverterRegistry.h	Implementation of SBMLConverterRegistry_t, a registry of available converters
SBMLConverterTypes.h	Definition of SBMLConverterTypes
SBMLDocument.cpp	Implementation of the top-level container for an SBML Model_t and associated data
SBMLDocument.h	Top-level container for an SBML Model_t and associated data
SBMLDocumentPlugin.cpp	Implementation of SBMLDocumentPlugin_t, the derived class of SBasePlugin_t
SBMLDocumentPlugin.h	Definition of SBMLDocumentPlugin_t, the derived class of SBasePlugin_t
SBMLDocumentPluginNotRequired.cpp	Implementation of SBMLDocumentPluginNotRequired_t, the plugin class of layout package for the Model_t element
SBMLDocumentPluginNotRequired.h	Definition of SBMLDocumentPluginNotRequired_t, the plugin class of layout package for the SBMLDocument_t element, whose 'required' attribute must be 'false'
SBMLError.cpp	Represents SBML errors and other diagnostics
SBMLError.h	Represents SBML errors and other diagnostics
SBMLErrorLog.cpp	Stores errors (and messages) encountered while processing SBML
SBMLErrorLog.h	Stores errors (and messages) encountered while processing SBML
SBMLErrorTable.h	Represents SBML errors and other diagnostics
SBMLExtension.cpp	Implementation of SBMLExtension_t, the base class of package extensions
SBMLExtension.h	Definition of SBMLExtension_t, the core component of SBML package extension
SBMLExtensionException.cpp	SBMLExtensionException_t class, the exception class for package extension
SBMLExtensionException.h	Class of exceptions thrown in some situations
SBMLExtensionNamespaces.cpp	Implementation of C-API for the SBMLExtensionNamespaces_t class
SBMLExtensionNamespaces.h	Class to store the SBML Level, Version and namespace of a package
SBMLExtensionRegister.h	Template class for registering extension packages
SBMLExtensionRegistry.cpp	Implementation of SBMLExtensionRegistry_t, the registry class in which extension packages are registered
SBMLExtensionRegistry.h	The registry class for tracking package extensions
SBMLExternalValidator.cpp
SBMLExternalValidator.h
SBMLFileResolver.cpp	Implementation of SBMLFileResolver_t, the file system based resolver for SBML Documents
SBMLFileResolver.h	A file-based resolver for SBML Documents
SBMLFunctionDefinitionConverter.cpp
SBMLFunctionDefinitionConverter.h	Definition of SBMLFunctionDefinitionConverter_t, a converter replacing function definitions
SBMLIdConverter.cpp	Implementation of SBMLIdConverter_t, a converter renaming SIds
SBMLIdConverter.h	Definition of SBMLIdConverter_t, a converter renaming SIds
SBMLInferUnitsConverter.cpp	Implementation of SBMLInferUnitsConverter_t
SBMLInferUnitsConverter.h	Definition of SBMLInferUnitsConverter_t, infers units for parameters
SBMLInitialAssignmentConverter.cpp	Implementation of SBMLInitialAssignmentConverter_t, a converter inlining initial assignments
SBMLInitialAssignmentConverter.h	Definition of SBMLInitialAssignmentConverter_t, a converter inlining function definitions
SBMLInternalValidator.cpp	Implementation of SBMLInternalValidator_t, the validator for all internal validation performed by libSBML
SBMLInternalValidator.h	Definition of SBMLInternalValidator_t, the validator for all internal validation performed by libSBML
SBMLLevel1Version1Converter.cpp	Implementation of SBMLLevel1Version1Converter_t
SBMLLevel1Version1Converter.h	Definition of SBMLLevel1Version1Converter_t
SBMLLevelVersionConverter.cpp	Implementation of SBMLFunctionDefinitionConverter_t, a converter replacing function definitions
SBMLLevelVersionConverter.h	Definition of SBMLLevelVersionConverter_t, the base class for SBML conversion
SBMLLocalParameterConverter.cpp	Implementation of SBMLLocalParameterConverter_t, a converter replacing local parameters with global ones
SBMLLocalParameterConverter.h	Definition of SBMLLocalParameterConverter_t, a converter replacing local parameters with global ones
SBMLNamespaces.cpp	SBMLNamespaces_t class to store level/version and namespace
SBMLNamespaces.h	SBMLNamespaces_t class to store level/version and namespace
SBMLRateOfConverter.cpp	Implementation of SBMLRateOfConverter_t, a converter changing 'rateOf' into functionDefinition
SBMLRateOfConverter.h	Definition of SBMLRateOfConverter_t, a converter changing reactions into rate rules
SBMLReactionConverter.cpp	Implementation of SBMLReactionConverter_t, a converter changing reactions into rate rules
SBMLReactionConverter.h	Definition of SBMLReactionConverter_t, a converter changing reactions into rate rules
SBMLReader.cpp	Reads an SBML Document into memory
SBMLReader.h	Reads an SBML Document into memory
SBMLResolver.cpp	Implementation of SBMLResolver_t, the base class of package extensions
SBMLResolver.h	Definition of SBMLResolver_t, the base class for resolving SBML documents
SBMLResolverRegistry.cpp
SBMLResolverRegistry.h	Implementation of SBMLResolverRegistry_t, a registry of available resolvers
SBMLRuleConverter.cpp
SBMLRuleConverter.h	Definition of SBMLRuleConverter_t, a converter sorting rules
SBMLStripPackageConverter.cpp	Implementation of SBMLStripPackageConverter_t, the base class of package extensions
SBMLStripPackageConverter.h	Definition of SBMLStripPackageConverter_t, the base class for SBML conversion
SBMLTransforms.cpp	Transform functions
SBMLTransforms.h
SBMLTypeCodes.cpp	Enumeration to identify SBML objects at runtime
SBMLTypeCodes.h	Enumeration to identify SBML objects at runtime
SBMLTypes.h	Include all SBML types in a single header file
SBMLUnitsConverter.cpp	Implementation of SBMLUnitsConverter_t, for converting units to SI
SBMLUnitsConverter.h	Definition of SBMLUnitsConverter_t, for converting units to SI
SBMLUri.cpp	Implementation of SBMLUri_t, the utility class for handling uris
SBMLUri.h	Definition of SBMLUri_t, the utility class for handling URIs
SBMLValidator.cpp	Implementation of SBMLValidator_t, the base class for user callable SBML validators
SBMLValidator.h	Definition of SBMLValidator_t, the base class for user callable SBML validators
SBMLVisitor.cpp	Visitor Design Pattern for the SBML object tree
SBMLVisitor.h	Visitor Design Pattern for the SBML object tree
SBMLWriter.cpp	Writes an SBML Document to file or in-memory string
SBMLWriter.h	Writes an SBML Document to file or in-memory string
SBO.cpp	SBO_t utility functions
SBO.h	SBO_t utility Function
SBOConsistencyValidator.cpp
SBOConsistencyValidator.h
SimpleSpeciesReference.cpp	Implementation of SimpleSpeciesReference_t
SimpleSpeciesReference.h	Definitions of SimpleSpeciesReference_t
Species.cpp	Implementations of Species_t and ListOfSpecies_t
Species.h	Definitions of Species_t and ListOfSpecies_t
SpeciesFeature.cpp	: Implementation of the SpeciesFeature_t class
SpeciesFeature.h	: Implementation of the SpeciesFeature_t class
SpeciesFeatureType.cpp	: Implementation of the SpeciesFeatureType_t class
SpeciesFeatureType.h	: Implementation of the SpeciesFeatureType_t class
SpeciesFeatureValue.cpp	: Implementation of the SpeciesFeatureValue_t class
SpeciesFeatureValue.h	: Implementation of the SpeciesFeatureValue_t class
SpeciesGlyph.cpp	Implementation of SpeciesGlyph_t for SBML Layout_t
SpeciesGlyph.h	Definition of SpeciesGlyph_t for SBML Layout_t
SpeciesReference.cpp	Implementation of SpeciesReference_t and ListOfSpeciesReferences_t
SpeciesReference.h	Definitions of SpeciesReference_t and ListOfSpeciesReferences_t
SpeciesReferenceGlyph.cpp	Implementation of SpeciesReferenceGlyph_t for SBML Layout_t
SpeciesReferenceGlyph.h	Definition of SpeciesReferenceGlyph_t for SBML Layout_t
SpeciesReferenceRole.h	Definition of SpeciesReferenceRole enum for SBML Layout_t
SpeciesType.cpp	Implementation of SpeciesType_t and ListOfSpeciesTypes_t
SpeciesType.h	Definitions of SpeciesType_t and ListOfSpeciesType
SpeciesTypeComponentIndex.cpp	: Implementation of the SpeciesTypeComponentIndex_t class
SpeciesTypeComponentIndex.h	: Implementation of the SpeciesTypeComponentIndex_t class
SpeciesTypeComponentMapInProduct.cpp	: Implementation of the SpeciesTypeComponentMapInProduct_t class
SpeciesTypeComponentMapInProduct.h	: Implementation of the SpeciesTypeComponentMapInProduct_t class
SpeciesTypeInstance.cpp	: Implementation of the SpeciesTypeInstance_t class
SpeciesTypeInstance.h	: Implementation of the SpeciesTypeInstance_t class
Stack.c
Stack.h
StoichiometryMath.cpp	Implementation of StoichiometryMath_t
StoichiometryMath.h	Definition of StoichiometryMath_t
StrictUnitConsistencyValidator.cpp
StrictUnitConsistencyValidator.h
StringBuffer.c
StringBuffer.h
Style.cpp	Implementation of the Style_t class
Style.h	Definition of the Style_t class
SubListOfSpeciesFeatures.cpp
SubListOfSpeciesFeatures.h	: Implementation of the SubListOfSpeciesFeatures_t class
Submodel.cpp	Implementation of Submodel_t, the SBase_t-derived class of the comp package
Submodel.h	Definition of Submodel_t, the SBase_t derived class of the comp package
SyntaxChecker.cpp	Syntax checking functions
SyntaxChecker.h	Syntax checking functions
Text.cpp	Implementation of the Text_t class
Text.h	Definition of the Text_t class
TextGlyph.cpp	Implementation of TextGlyph_t for SBML Layout_t
TextGlyph.h	Definition of TextGlyph_t for SBML Layout_t
Transformation.cpp	Class representing a 3D affine transformation
Transformation.h	Abstract class for representing 3D affine transformations
Transformation2D.cpp	Class representing a 2D affine transformation
Transformation2D.h	Abstract base class for representing 2D affine transformations
Transition.cpp	Implementation of the Transition_t class
Transition.h	Implementation of the Transition_t class
Trigger.cpp	Implementation of Trigger_t
Trigger.h	Definition of Trigger_t
Unit.cpp	Implementations of Unit_t and ListOfUnits_t
Unit.h	Definitions of Unit_t and ListOfUnits_t
UnitConsistencyValidator.cpp
UnitConsistencyValidator.h
UnitDefinition.cpp	Implementations of SBML's UnitDefinition_t and ListOfUnitDefinitions_t
UnitDefinition.h	Definitions of UnitDefinition_t and ListOfUnitDefinitions_t
UnitKind.c	SBML UnitKind enumeration
UnitKind.h	Definition of SBML's UnitKind enumeration
util.cpp	Utility functions
util.h	Utility functions
Validator.cpp	Base class for SBML Validators
Validator.h	Base class for SBML Validators
VConstraint.cpp	Base class for all SBML Validator_t Constraints
VConstraint.h	Base class for all SBML Validator_t Constraints
XercesAttributes.cpp
XercesAttributes.h
XercesHandler.cpp
XercesHandler.h
XercesNamespaces.cpp
XercesNamespaces.h
XercesParser.cpp
XercesParser.h
XercesTranscode.cpp
XercesTranscode.h
XMLAttributes.cpp	XMLAttributes_t are a list of name/value pairs for XMLElements
XMLAttributes.h	XMLAttributes_t are a list of name/value pairs for XML elements
XMLBuffer.cpp
XMLBuffer.h
XMLConstructorException.cpp	XMLConstructorException_t an exception thrown by XML classes
XMLConstructorException.h	XMLConstructorException_t an exception thrown by XML classes
XMLError.cpp	Represents errors (and messages) encountered during an XML parse
XMLError.h	Represents errors (and messages) encountered during an XML parse
XMLErrorLog.cpp	Stores errors (and messages) encountered while processing XML
XMLErrorLog.h	Stores errors (and messages) encountered while processing XML
XMLExtern.h	Defines LIBLAX_EXTERN
XMLFileBuffer.cpp
XMLFileBuffer.h
XMLHandler.cpp
XMLHandler.h
XMLInputStream.cpp
XMLInputStream.h	XMLInputStream_t
XMLLogOverride.cpp	Utility class implementing a temporary override the severity on error logs
XMLLogOverride.h	Utility class implementing a temporary override the severity on error logs
XMLMemoryBuffer.cpp
XMLMemoryBuffer.h
XMLNamespaces.cpp	A list of XMLNamespace declarations (URI/prefix pairs)
XMLNamespaces.h	A list of XMLNamespace declarations (URI/prefix pairs)
XMLNode.cpp	A node in an XML document tree
XMLNode.h	Class definition of XMLNode_t, a node in an XML document tree
XMLOutputStream.cpp
XMLOutputStream.h	XMLOutputStream_t
XMLParser.cpp
XMLParser.h
XMLToken.cpp	A unit of XML syntax, either an XML element or text
XMLToken.h	A unit of XML syntax, either an XML element or text
XMLTokenizer.cpp
XMLTokenizer.h
XMLTriple.cpp	Stores an XML namespace triple
XMLTriple.h	Stores an XML namespace triple