| addCVTerm(CVTerm *term, bool newBag=false) | SBase | |
| appendAnnotation(const XMLNode *annotation) | SBase | virtual |
| appendAnnotation(const std::string &annotation) | SBase | virtual |
| appendNotes(const XMLNode *notes) | SBase | |
| appendNotes(const std::string ¬es) | SBase | |
| clone() const | Species | virtual |
| deleteDisabledPlugins(bool recursive=true) | SBase | |
| disablePackage(const std::string &pkgURI, const std::string &pkgPrefix) | SBase | |
| enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag) | SBase | |
| getAllElements(ElementFilter *filter=NULL) | SBase | virtual |
| getAllElementsFromPlugins(ElementFilter *filter=NULL) | SBase | virtual |
| getAncestorOfType(int type, const std::string &pkgName="core") | SBase | |
| getAncestorOfType(int type, const std::string pkgName="core") const | SBase | |
| getAnnotation() | SBase | |
| getAnnotation() const | SBase | |
| getAnnotationString() | SBase | |
| getAnnotationString() const | SBase | |
| getBoundaryCondition() const | Species | |
| getCharge() const | Species | |
| getColumn() const | SBase | |
| getCompartment() const | Species | |
| getConstant() const | Species | |
| getConversionFactor() const | Species | |
| getCVTerm(unsigned int n) | SBase | |
| getCVTerms() | SBase | |
| getCVTerms() const | SBase | |
| getDerivedUnitDefinition() | Species | |
| getDerivedUnitDefinition() const | Species | |
| getDisabledPlugin(unsigned int n) | SBase | |
| getDisabledPlugin(unsigned int n) const | SBase | |
| getElementByMetaId(const std::string &metaid) | SBase | virtual |
| getElementByMetaId(const std::string &metaid) const | SBase | |
| getElementBySId(const std::string &id) | SBase | virtual |
| getElementBySId(const std::string &id) const | SBase | |
| getElementName() const | Species | virtual |
| getHasOnlySubstanceUnits() const | Species | |
| getId() const | Species | virtual |
| getIdAttribute() const | SBase | |
| getInitialAmount() const | Species | |
| getInitialConcentration() const | Species | |
| getLevel() const | SBase | |
| getLine() const | SBase | |
| getMetaId() const | SBase | |
| getMetaId() | SBase | |
| getModel() const | SBase | |
| getModelHistory() const | SBase | |
| getModelHistory() | SBase | |
| getName() const | Species | virtual |
| getNamespaces() const | SBase | virtual |
| getNotes() | SBase | |
| getNotes() const | SBase | |
| getNotesString() | SBase | |
| getNotesString() const | SBase | |
| getNumCVTerms() | SBase | |
| getNumDisabledPlugins() const | SBase | |
| getNumPlugins() const | SBase | |
| getPackageCoreVersion() const | SBase | |
| getPackageName() const | SBase | |
| getPackageVersion() const | SBase | |
| getParentSBMLObject() | SBase | |
| getParentSBMLObject() const | SBase | |
| getPlugin(const std::string &package) | SBase | |
| getPlugin(const std::string &package) const | SBase | |
| getPlugin(unsigned int n) | SBase | |
| getPlugin(unsigned int n) const | SBase | |
| getPrefix() const | SBase | |
| getResourceBiologicalQualifier(std::string resource) | SBase | |
| getResourceModelQualifier(std::string resource) | SBase | |
| getSBMLDocument() const | SBase | |
| getSBMLDocument() | SBase | |
| getSBOTerm() const | SBase | |
| getSBOTermAsURL() const | SBase | |
| getSBOTermID() const | SBase | |
| getSpatialSizeUnits() const | Species | |
| getSpeciesType() const | Species | |
| getSubstanceUnits() const | Species | |
| getTypeCode() const | Species | virtual |
| getUnits() const | Species | |
| getURI() const | SBase | |
| getUserData() const | SBase | |
| getVersion() const | SBase | |
| hasRequiredAttributes() const | Species | virtual |
| hasValidLevelVersionNamespaceCombination() | SBase | |
| initDefaults() | Species | |
| isPackageEnabled(const std::string &pkgName) const | SBase | |
| isPackageURIEnabled(const std::string &pkgURI) const | SBase | |
| isPkgEnabled(const std::string &pkgName) const | SBase | |
| isPkgURIEnabled(const std::string &pkgURI) const | SBase | |
| isSetAnnotation() const | SBase | |
| isSetBoundaryCondition() const | Species | |
| isSetCharge() const | Species | |
| isSetCompartment() const | Species | |
| isSetConstant() const | Species | |
| isSetConversionFactor() const | Species | |
| isSetHasOnlySubstanceUnits() const | Species | |
| isSetId() const | Species | virtual |
| isSetIdAttribute() const | SBase | |
| isSetInitialAmount() const | Species | |
| isSetInitialConcentration() const | Species | |
| isSetMetaId() const | SBase | |
| isSetModelHistory() | SBase | |
| isSetName() const | Species | virtual |
| isSetNotes() const | SBase | |
| isSetSBOTerm() const | SBase | |
| isSetSpatialSizeUnits() const | Species | |
| isSetSpeciesType() const | Species | |
| isSetSubstanceUnits() const | Species | |
| isSetUnits() const | Species | |
| isSetUserData() const | SBase | |
| matchesRequiredSBMLNamespacesForAddition(const SBase *sb) | SBase | |
| matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const | SBase | |
| matchesSBMLNamespaces(const SBase *sb) | SBase | |
| matchesSBMLNamespaces(const SBase *sb) const | SBase | |
| operator=(const Species &rhs) | Species | |
| SBase::operator=(const SBase &rhs) | SBase | |
| read(XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED) | SBase | |
| removeFromParentAndDelete() | SBase | virtual |
| removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true) | SBase | |
| renameMetaIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
| renameSIdRefs(const std::string &oldid, const std::string &newid) | Species | virtual |
| renameUnitSIdRefs(const std::string &oldid, const std::string &newid) | Species | virtual |
| replaceTopLevelAnnotationElement(const XMLNode *annotation) | SBase | |
| replaceTopLevelAnnotationElement(const std::string &annotation) | SBase | |
| setAnnotation(const XMLNode *annotation) | SBase | virtual |
| setAnnotation(const std::string &annotation) | SBase | virtual |
| setBoundaryCondition(bool value) | Species | |
| setCharge(int value) | Species | |
| setCompartment(const std::string &sid) | Species | |
| setConstant(bool value) | Species | |
| setConversionFactor(const std::string &sid) | Species | |
| setElementText(const std::string &text) | SBase | protectedvirtual |
| setHasOnlySubstanceUnits(bool value) | Species | |
| setId(const std::string &sid) | Species | virtual |
| setIdAttribute(const std::string &sid) | SBase | virtual |
| setInitialAmount(double value) | Species | |
| setInitialConcentration(double value) | Species | |
| setMetaId(const std::string &metaid) | SBase | |
| setModelHistory(ModelHistory *history) | SBase | |
| setName(const std::string &name) | Species | virtual |
| setNamespaces(XMLNamespaces *xmlns) | SBase | |
| setNotes(const XMLNode *notes) | SBase | |
| setNotes(const std::string ¬es, bool addXHTMLMarkup=false) | SBase | |
| setSBOTerm(int value) | SBase | virtual |
| setSBOTerm(const std::string &sboid) | SBase | virtual |
| setSpatialSizeUnits(const std::string &sid) | Species | |
| setSpeciesType(const std::string &sid) | Species | |
| setSubstanceUnits(const std::string &sid) | Species | |
| setUnits(const std::string &sname) | Species | |
| setUserData(void *userData) | SBase | |
| Species(unsigned int level, unsigned int version) | Species | |
| Species(SBMLNamespaces *sbmlns) | Species | |
| Species(const Species &orig) | Species | |
| toSBML() | SBase | |
| toXMLNode() | SBase | |
| unsetAnnotation() | SBase | |
| unsetBoundaryCondition() | Species | |
| unsetCharge() | Species | |
| unsetCompartment() | Species | |
| unsetConstant() | Species | |
| unsetConversionFactor() | Species | |
| unsetCVTerms() | SBase | |
| unsetHasOnlySubstanceUnits() | Species | |
| unsetId() | SBase | virtual |
| unsetIdAttribute() | SBase | |
| unsetInitialAmount() | Species | |
| unsetInitialConcentration() | Species | |
| unsetMetaId() | SBase | |
| unsetModelHistory() | SBase | |
| unsetName() | Species | virtual |
| unsetNotes() | SBase | |
| unsetSBOTerm() | SBase | |
| unsetSpatialSizeUnits() | Species | |
| unsetSpeciesType() | Species | |
| unsetSubstanceUnits() | Species | |
| unsetUnits() | Species | |
| unsetUserData() | SBase | |
| ~SBase() | SBase | virtual |
| ~Species() | Species | virtual |
