File List

Here is a list of all files with brief descriptions:

AlgebraicRule.cpp	Implementations of AlgebraicRule
AlgebraicRule.h	Definitions of AlgebraicRule
AssignmentRule.cpp	Implementations of AssignmentRule
AssignmentRule.h	Definitions of AssignmentRule
Association.cpp	Implementation of Association, the contents of a GeneAssociation
Association.h	Definition of Association, the contents of a GeneAssociation
ASTBasePlugin.cpp
ASTBasePlugin.h
ASTNode.cpp	Abstract Syntax Tree (AST) for representing formula trees
ASTNode.h	Abstract Syntax Tree (AST) for representing formula trees
ASTNodeType.h	Enumeration for Abstract Syntax Tree (AST)
BindingSiteSpeciesType.cpp	: Implementation of the BindingSiteSpeciesType class
BindingSiteSpeciesType.h	: Implementation of the BindingSiteSpeciesType class
BoundingBox.cpp	Implementation of BoundingBox for SBML Layout
BoundingBox.h	Definition of BoundingBox for SBML Layout
CallbackRegistry.cpp
CallbackRegistry.h
CobraToFbcConverter.cpp	Implementation of a cobra 2 fbc converter
CobraToFbcConverter.h	Definition of a cobra 2 fbc converter
ColorDefinition.cpp	Implementation of the ColorDefinition class
ColorDefinition.h	Definition of the ColorDefinition class
common-documentation.h	Common text fragments used throughout libSBML's code documentation
common-sbmlerror-codes.h
common.h	Common functions and macros for C and C++
Compartment.cpp	Implementations of Compartment and ListOfCompartments
Compartment.h	Definitions of Compartment and ListOfCompartments
CompartmentGlyph.cpp	Implementation of CompartmentGlyph for SBML Layout
CompartmentGlyph.h	Definition of CompartmentGlyph for SBML Layout
CompartmentReference.cpp	: Implementation of the CompartmentReference class
CompartmentReference.h	: Implementation of the CompartmentReference class
CompartmentType.cpp	Implementation of CompartmentType and ListOfCompartmentTypes
CompartmentType.h	Definitions of CompartmentType and ListOfCompartmentTypes
CompBase.cpp	Implementation of CompBase, the base class of extension entities plugged in SBase derived classes in the SBML Core package
CompBase.h	Definition of CompBase, the base class of extension entities plugged in SBase derived classes in the SBML Core package
CompConsistencyValidator.cpp
CompConsistencyValidator.h
CompExtension.cpp	Implementation of CompExtension, the core module of comp package
CompExtension.h	Definition of CompExtension, the core module of comp package
CompExtensionTypes.h	Include all SBML types of Comp extension in a single header file
CompFlatteningConverter.cpp	Implementation of a first flattening converter
CompFlatteningConverter.h	Definition of a first flattening converter
compfwd.h	SBML Comp C structure declarations
CompIdentifierConsistencyValidator.cpp
CompIdentifierConsistencyValidator.h
CompModelPlugin.cpp	Implementation of CompModelPlugin, the plugin class of comp package for the SBase element
CompModelPlugin.h	Definition of CompModelPlugin, the plugin class of comp package for the Model element
CompSBasePlugin.cpp	Implementation of CompSBasePlugin, the plugin class of comp package for the SBase element
CompSBasePlugin.h	Definition of CompSBasePlugin, the plugin class of comp package for the Model element
CompSBMLDocumentPlugin.cpp	Implementation of CompSBMLDocumentPlugin, the plugin class of comp package for the SBase element
CompSBMLDocumentPlugin.h	Definition of CompSBMLDocumentPlugin, the plugin class of comp package for the Model element
CompSBMLError.h	Represents SBML errors and other diagnostics
CompSBMLErrorTable.h	Represents SBML errors and other diagnostics
CompUnitConsistencyValidator.cpp
CompUnitConsistencyValidator.h
CompValidator.cpp
CompValidator.h	Base class for SBML CompValidators
ConsistencyValidator.cpp
ConsistencyValidator.h
Constraint.cpp	Implementations of Constraint and ListOfConstraints
Constraint.h	Definitions of Constraint and ListOfConstraints
ConstraintMacros.h	Defines the validator constraint "language"
ConversionOption.cpp	Implementation of ConversionOption, the class encapsulating conversion options
ConversionOption.h	Definition of ConversionOption, the class encapsulating conversion options
ConversionProperties.cpp	Implemenentation of ConversionProperties, the class encapsulating conversion configuration
ConversionProperties.h	Definition of ConversionProperties, the class encapsulating conversion configuration
CubicBezier.cpp	Implementation of CubicBezier for SBML Layout
CubicBezier.h	Definition of CubicBezier for SBML Layout
Curve.cpp	Implementation of Curve for SBML Layout
Curve.h	Definition of Curve for SBML Layout
CVTerm.cpp	CVTerm I/O
CVTerm.h	Definition of a CVTerm class for adding annotations to a Model
Date.cpp	Date I/O
Date.h	Date I/O
DefaultTerm.cpp	Implementation of the DefaultTerm class
DefaultTerm.h	Implementation of the DefaultTerm class
DefaultValues.cpp	Implementation of the DefaultValues class
DefaultValues.h	Definition of the DefaultValues class
DefinitionURLRegistry.cpp
DefinitionURLRegistry.h	Implementation of DefinitionURLRegistry, a registry of available DefinitionURLs
Delay.cpp	Implementation of Delay
Delay.h	Definition of Delay
Deletion.cpp	Implementation of Deletion, the SBaseRef derived class of deletions package
Deletion.h	Definition of Deletion, the SBase derived class of deletions package
Dimensions.cpp	Implementation of Dimensions for SBML Layout
Dimensions.h	Definition of Dimensions for SBML Layout
ElementFilter.cpp
ElementFilter.h	Base class of element filters
Ellipse.cpp	Implementation of the Ellipse class
Ellipse.h	Definition of the Ellipse class
Event.cpp	Implementations of Event and ListOfEvents
Event.h	Definitions of Event and ListOfEvents
EventAssignment.cpp	Implementation of EventAssignment
EventAssignment.h	Definition of EventAssignment and ListOfEventAssignments
ExpatAttributes.cpp
ExpatAttributes.h
ExpatHandler.cpp
ExpatHandler.h
ExpatParser.cpp
ExpatParser.h
ExpectedAttributes.cpp	Implementation of ExpectedAttributes, the class allowing the specification of attributes to expect
ExpectedAttributes.h	Definition of ExpectedAttributes, the class allowing the specification of attributes to expect
extern.h	Definitions of LIBSBML_EXTERN and related things
ExternalModelDefinition.cpp	Implementation of ExternalModelDefinition, the SBase-derived class of the comp package
ExternalModelDefinition.h	Definition of ExternalModelDefinition, the SBase derived class of the comp package
FbcAnd.cpp	Implementation of the FbcAnd class
FbcAnd.h	Implementation of the FbcAnd class
FbcAssociation.cpp	Implementation of the FbcAssociation class
FbcAssociation.h	Implementation of the FbcAssociation class
FbcConsistencyValidator.cpp
FbcConsistencyValidator.h
FbcExtension.cpp	Implementation of FbcExtension, the core module of fbc package
FbcExtension.h	Definition of FbcExtension, the core module of fbc package
FbcExtensionTypes.h	Includes all SBML types of the fbc package extension in a single header file
fbcfwd.h	Implementation of the fbcfwd class
FbcIdentifierConsistencyValidator.cpp
FbcIdentifierConsistencyValidator.h
FbcModelPlugin.cpp	Implementation of FbcModelPlugin, the plugin class of the fbc package for the Model element
FbcModelPlugin.h	Definition of FbcModelPlugin, the plugin class of fbc package for the Model element
FbcOr.cpp	Implementation of the FbcOr class
FbcOr.h	Implementation of the FbcOr class
FbcReactionPlugin.cpp	Implementation of the FbcReactionPlugin class
FbcReactionPlugin.h	Implementation of the FbcReactionPlugin class
FbcSBMLDocumentPlugin.cpp	Implementation of the FbcSBMLDocumentPlugin class
FbcSBMLDocumentPlugin.h	Implementation of the FbcSBMLDocumentPlugin class
FbcSBMLError.h	Represents SBML errors and other diagnostics
FbcSBMLErrorTable.h	Represents SBML errors and other diagnostics
FbcSpeciesPlugin.cpp	Implementation of FbcSpeciesPlugin, the plugin class of the fbc package for the Species element
FbcSpeciesPlugin.h	Definition of FbcSpeciesPlugin, the plugin class of the fbc package for the Species element
FbcToCobraConverter.cpp	Implementation of a fbc 2 cobra converter
FbcToCobraConverter.h	Definition of a fbc 2 cobra converter
FbcV1ToV2Converter.cpp	Implementation of a fbc v1 to fbc v2 converter
FbcV1ToV2Converter.h	Definition of a fbc v1 to fbc v2 converter
FbcV2ToV1Converter.cpp	Implementation of a fbc v2 to fbc v1 converter
FbcV2ToV1Converter.h	Definition of a fbc v2 to fbc v1 converter
FbcValidator.cpp	Base class for SBML Validators
FbcValidator.h	Base class for SBML CompValidators
FluxBound.cpp	Implementation of FluxBound, the SBase derived class of the fbc package
FluxBound.h	Definition of FluxBound, the SBase derived class of the fbc package
FluxObjective.cpp	Implementation of the FluxObjective class
FluxObjective.h	Definition of FluxObjective, the SBase derived class of the fbc package
FormulaFormatter.cpp	Formats an AST formula tree as an SBML formula string
FormulaFormatter.h	Formats an AST formula tree as an SBML formula string
FormulaParser.cpp	Parses an SBML formula string into an AST
FormulaParser.h	Parses an SBML formula string into an AST
FormulaTokenizer.cpp	Tokenizes an SBML formula string
FormulaTokenizer.h	Tokenizes an SBML formula string
FunctionDefinition.cpp	Implementation of FunctionDefinition and ListOfFunctionDefinitions
FunctionDefinition.h	Definitions of FunctionDefinition and ListOfFunctionDefinitions
FunctionTerm.cpp	Implementation of the FunctionTerm class
FunctionTerm.h	Implementation of the FunctionTerm class
GeneAssociation.cpp	Implementation of GeneAssociation, the SBase derived class of the fbc package
GeneAssociation.h	Definition of GeneAssociation, the SBase derived class of the fbc package
GeneProduct.cpp	Implementation of the GeneProduct class
GeneProduct.h	Implementation of the GeneProduct class
GeneProductAssociation.cpp	Implementation of the GeneProductAssociation class
GeneProductAssociation.h	Implementation of the GeneProductAssociation class
GeneProductRef.cpp	Implementation of the GeneProductRef class
GeneProductRef.h	Implementation of the GeneProductRef class
GeneralGlyph.cpp	Implementation of GeneralGlyph for SBML Layout
GeneralGlyph.h	Definition of GeneralGlyph for SBML Layout
GlobalRenderInformation.cpp	Class for the storage of global render information
GlobalRenderInformation.h	Definition of the GlobalRenderInformation class
GlobalStyle.cpp	Implementation of the GlobalStyle class
GlobalStyle.h	Definition of the GlobalStyle class
GradientBase.cpp	Abstract base class for gradient objects
GradientBase.h	Abstract base class for gradient definitions
GradientStop.cpp	Class representing a stop in a gradient definition
GradientStop.h	Class for representing a stop in a gradient definition
GraphicalObject.cpp	Implementation of GraphicalObject for SBML Layout
GraphicalObject.h	Definition of GraphicalObject for SBML Layout
GraphicalPrimitive1D.cpp	Abstract base class for graphical 1D objects
GraphicalPrimitive1D.h	Definition of the GraphicalPrimitive1D class
GraphicalPrimitive2D.cpp	Implementation of the GraphicalPrimitive2D class
GraphicalPrimitive2D.h	Definition of the GraphicalPrimitive2D class
Group.cpp	Implementation of the Group class
Group.h	Definition of the Group class
GroupsConsistencyValidator.cpp
GroupsConsistencyValidator.h
GroupsExtension.cpp	Implementation of GroupsExtension
GroupsExtension.h	Definition of GroupsExtension
GroupsExtensionTypes.h	Definition of GroupsExtensionTypes
groupsfwd.h	Definition of groupsfwd
GroupsIdentifierConsistencyValidator.cpp
GroupsIdentifierConsistencyValidator.h
GroupsModelPlugin.cpp	Implementation of the GroupsModelPlugin class
GroupsModelPlugin.h	Definition of the GroupsModelPlugin class
GroupsSBMLDocumentPlugin.cpp	Implementation of the GroupsSBMLDocumentPlugin class
GroupsSBMLDocumentPlugin.h	Definition of the GroupsSBMLDocumentPlugin class
GroupsSBMLError.h	Definition of the GroupsSBMLError class
GroupsSBMLErrorTable.h	Definition of the GroupsSBMLErrorTable class
GroupsValidator.cpp	Definition of GroupsValidator
GroupsValidator.h	Definition of GroupsValidator
IdentifierConsistencyValidator.cpp
IdentifierConsistencyValidator.h
IdentifierTransformer.cpp
IdentifierTransformer.h
IdFilter.cpp
IdFilter.h
IdList.cpp
IdList.h
Image.cpp	Implementation of the Image class
Image.h	Definition of the Image class
InitialAssignment.cpp	Implementation of InitialAssignment and ListOfInitialAssignments
InitialAssignment.h	Definitions of InitialAssignment and ListOfInitialAssignments
Input.cpp	Implementation of the Input class
Input.h	Implementation of the Input class
InSpeciesTypeBond.cpp	: Implementation of the InSpeciesTypeBond class
InSpeciesTypeBond.h	: Implementation of the InSpeciesTypeBond class
InternalConsistencyValidator.cpp
InternalConsistencyValidator.h
IntraSpeciesReaction.cpp	: Implementation of the IntraSpeciesReaction class
IntraSpeciesReaction.h	: Implementation of the IntraSpeciesReaction class
ISBMLExtensionNamespaces.cpp
ISBMLExtensionNamespaces.h
KineticLaw.cpp	Implementation of KineticLaw
KineticLaw.h	Definition of KineticLaw
L1CompatibilityValidator.cpp
L1CompatibilityValidator.h
L2v1CompatibilityValidator.cpp
L2v1CompatibilityValidator.h
L2v2CompatibilityValidator.cpp
L2v2CompatibilityValidator.h
L2v3CompatibilityValidator.cpp
L2v3CompatibilityValidator.h
L2v4CompatibilityValidator.cpp
L2v4CompatibilityValidator.h
L3FormulaFormatter.cpp	Formats an AST formula tree as an SBML L3 formula string
L3FormulaFormatter.h	Formats an L3 AST formula tree as an SBML formula string
L3Parser.cpp
L3Parser.h	Definition of the level 3 infix-to-mathml parser C functions
L3ParserSettings.cpp	Definition of the level 3 infix-to-mathml parser settings
L3ParserSettings.h	Definition of the level 3 infix-to-mathml parser settings
L3v1CompatibilityValidator.cpp
L3v1CompatibilityValidator.h
L3v2CompatibilityValidator.cpp
L3v2CompatibilityValidator.h
Layout.cpp	Implementation of Layout for SBML Layout
Layout.h	Definition of Layout for SBML Layout
LayoutAnnotation.cpp	Layout annotation I/O
LayoutAnnotation.h	Layout annotation I/O
LayoutConsistencyValidator.cpp
LayoutConsistencyValidator.h
LayoutExtension.cpp	Implementation of LayoutExtension, the core module of layout package
LayoutExtension.h	Definition of LayoutExtension, the core module of layout package
LayoutExtensionTypes.h	Include all SBML types of layout extension in a single header file
layoutfwd.h	C Structure declarations for SBML Layout
LayoutIdentifierConsistencyValidator.cpp
LayoutIdentifierConsistencyValidator.h
LayoutModelPlugin.cpp	Implementation of LayoutModelPlugin, the plugin class of layout package for the Model element
LayoutModelPlugin.h	Definition of LayoutModelPlugin, the plugin class of layout package for Model element
LayoutSBMLDocumentPlugin.cpp	Implementation of the LayoutSBMLDocumentPlugin class
LayoutSBMLDocumentPlugin.h	Implementation of the LayoutSBMLDocumentPlugin class
LayoutSBMLError.h	Implementation of the LayoutSBMLError class
LayoutSBMLErrorTable.h
LayoutSpeciesReferencePlugin.cpp	Implementation of LayoutSpeciesReferencePlugin, the plugin object of layout package (Level2) for the SpeciesReference and ModifierSpeciesReference elements
LayoutSpeciesReferencePlugin.h	Definition of LayoutSpeciesReferencePlugin, the plugin class of layout package (Level2) for the SpeciesReference and ModifierSpeciesReference elements
LayoutUtilities.cpp	Implementation of some methods used by many of the layout files
LayoutUtilities.h	Definition of LayoutUtilities for SBML Layout
LayoutValidator.cpp	Implementation of the LayoutValidator class
LayoutValidator.h	Implementation of the LayoutValidator class
libsbml-config-common.h	Configuration variables
libsbml-config.h	Decides whether to #include Unix or Windows configuration variables
libsbml-namespace.h	Defines C++ namespace of libSBML
libsbml-package.h	Definitions of the PACKAGE_ variables
libsbml-version.cpp	Define libSBML version numbers for access from client software
libsbml-version.h	Define libSBML version numbers for access from client software
LibXMLAttributes.cpp
LibXMLAttributes.h
LibXMLHandler.cpp
LibXMLHandler.h
LibXMLNamespaces.cpp	Extracts XML namespace declarations from LibXML prefix/URI pairs
LibXMLNamespaces.h	Extracts XML namespace declarations from LibXML prefix/URI pairs
LibXMLParser.cpp
LibXMLParser.h
LibXMLTranscode.cpp
LibXMLTranscode.h
LinearGradient.cpp	Implementation of the LinearGradient class
LinearGradient.h	Definition of the LinearGradient class
LineEnding.cpp	Class representing line endings,e.g
LineEnding.h	Class representing line endings, e.g
LineSegment.cpp	Implementation of LineSegment for SBML Layout
LineSegment.h	Definition of LineSegment for SBML Layout
List.cpp	Simple, generic list class
List.h	Simple, generic list utility class
ListOf.cpp	Wraps List and inherits from SBase
ListOf.h
ListOfColorDefinitions.cpp	Implementation of the ListOfColorDefinitions class
ListOfColorDefinitions.h	Definition of the ListOfColorDefinitions class
ListOfCurveElements.cpp	Storage class for curve elements
ListOfCurveElements.h	Definition of the ListOfCurveElements class
ListOfDeletions.cpp	Implementation of ListOfDeletions
ListOfDeletions.h	Definition of ListOfDeletions, the SBase derived class of deletions package
ListOfDrawables.cpp	Implementation of the ListOfDrawables class
ListOfDrawables.h	Definition of the ListOfDrawables class
ListOfExternalModelDefinitions.cpp	Implementation of ListOfExternalModelDefinitions
ListOfExternalModelDefinitions.h	Definition of ListOfExternalModelDefinitions, the SBase derived class of the Hierarchial Model Defintions package
ListOfGlobalRenderInformation.cpp	Implementation of the ListOfGlobalRenderInformation class
ListOfGlobalRenderInformation.h	Definition of the ListOfGlobalRenderInformation class
ListOfGlobalStyles.cpp	Implementation of the ListOfGlobalStyles class
ListOfGlobalStyles.h	Definition of the ListOfGlobalStyles class
ListOfGradientDefinitions.cpp	Implementation of the ListOfGradientDefinitions class
ListOfGradientDefinitions.h	Definition of the ListOfGradientDefinitions class
ListOfGradientStops.cpp	Implementation of the ListOfGradientStops class
ListOfGradientStops.h	Definition of the ListOfGradientStops class
ListOfGroups.cpp	Implementation of the ListOfGroups class
ListOfGroups.h	Definition of the ListOfGroups class
ListOfLineEndings.cpp	Implementation of the ListOfLineEndings class
ListOfLineEndings.h	Definition of the ListOfLineEndings class
ListOfLocalRenderInformation.cpp	Implementation of the ListOfLocalRenderInformation class
ListOfLocalRenderInformation.h	Definition of the ListOfLocalRenderInformation class
ListOfLocalStyles.cpp	Implementation of the ListOfLocalStyles class
ListOfLocalStyles.h	Definition of the ListOfLocalStyles class
ListOfMembers.cpp	Implementation of the ListOfMembers class
ListOfMembers.h	Definition of the ListOfMembers class
ListOfModelDefinitions.cpp
ListOfModelDefinitions.h	Definition of ListOfModelDefinitions, the SBase derived class of modelDefinitions package
ListOfPorts.cpp	Implementation of ListOfPorts
ListOfPorts.h	Definition of ListOfPorts, the SBase derived class of ports package
ListOfReplacedElements.cpp
ListOfReplacedElements.h	Definition of ListOfReplacedElements, the SBase derived class of replacedElements package
ListOfSubmodels.cpp	Implementation of ListOfSubmodels
ListOfSubmodels.h	Definition of ListOfSubmodels, the SBase derived class of submodels package
LocalParameter.cpp	Implementations of LocalLocalParameter and ListOfLocalLocalParameters
LocalParameter.h	Definitions of LocalParameter and ListOfLocalParameters
LocalRenderInformation.cpp	Implementation of the LocalRenderInformation class
LocalRenderInformation.h	Definition of the LocalRenderInformation class
LocalStyle.cpp	Class for representing a local style
LocalStyle.h	Definition of the LocalStyle class
MathFilter.cpp
MathFilter.h
MathML.cpp	Utilities for reading and writing MathML to/from text strings
MathML.h	Utilities for reading and writing MathML to/from text strings
MathMLConsistencyValidator.cpp
MathMLConsistencyValidator.h
Member.cpp	Implementation of the Member class
Member.h	Definition of the Member class
memory.c
memory.h
MetaIdFilter.cpp
MetaIdFilter.h
Model.cpp	Implementation of Model
Model.h	Definition of Model
ModelCreator.cpp	ModelCreator I/O
ModelCreator.h	ModelCreator I/O
ModelDefinition.cpp	Implementation of ModelDefinition, the Subelement derived class of modelDefinitions package
ModelDefinition.h	Definition of ModelDefinition, the SBase derived class of the comp package
ModelHistory.cpp	ModelHistory I/O
ModelHistory.h	ModelHistory I/O
ModelingPracticeValidator.cpp
ModelingPracticeValidator.h
ModifierSpeciesReference.cpp	Implementation of ModifierSpeciesReference
ModifierSpeciesReference.h	Definitions of ModifierSpeciesReference
MultiASTPlugin.cpp	Implementation of MultiASTPlugin, the plugin class of multi package for the AST element
MultiASTPlugin.h	Definition of MultiASTPlugin, the plugin class of multi package for the AST element
MultiCompartmentPlugin.cpp	: Implementation of the MultiCompartmentPlugin class
MultiCompartmentPlugin.h	: Implementation of the MultiCompartmentPlugin class
MultiConsistencyValidator.cpp
MultiConsistencyValidator.h
MultiExtension.cpp	: Implementation of the MultiExtension class
MultiExtension.h	: Implementation of the MultiExtension class
MultiExtensionTypes.h	: Implementation of the MultiExtensionTypes class
multifwd.h	: Implementation of the multifwd class
MultiIdentifierConsistencyValidator.cpp
MultiIdentifierConsistencyValidator.h
MultiListOfReactionsPlugin.cpp	: Implementation of the MultiListOfReactionsPlugin class
MultiListOfReactionsPlugin.h	: Implementation of the MultiListOfReactionsPlugin class
MultiMathMLConsistencyValidator.cpp
MultiMathMLConsistencyValidator.h
MultiModelPlugin.cpp	: Implementation of the MultiModelPlugin class
MultiModelPlugin.h	: Implementation of the MultiModelPlugin class
MultiSBMLDocumentPlugin.cpp	: Implementation of the MultiSBMLDocumentPlugin class
MultiSBMLDocumentPlugin.h	: Implementation of the MultiSBMLDocumentPlugin class
MultiSBMLError.h	: Implementation of the MultiSBMLError class
MultiSBMLErrorTable.h	: Implementation of the MultiSBMLErrorTable class
MultiSimpleSpeciesReferencePlugin.cpp	: Implementation of the MultiSimpleSpeciesReferencePlugin class
MultiSimpleSpeciesReferencePlugin.h	: Implementation of the MultiSimpleSpeciesReferencePlugin class
MultiSpeciesPlugin.cpp	: Implementation of the MultiSpeciesPlugin class
MultiSpeciesPlugin.h	: Implementation of the MultiSpeciesPlugin class
MultiSpeciesReferencePlugin.cpp	: Implementation of the MultiSpeciesReferencePlugin class
MultiSpeciesReferencePlugin.h	: Implementation of the MultiSpeciesReferencePlugin class
MultiSpeciesType.cpp	: Implementation of the MultiSpeciesType class
MultiSpeciesType.h	: Implementation of the MultiSpeciesType class
MultiValidator.cpp	: Implementation of the MultiValidator class
MultiValidator.h	: Implementation of the MultiValidator class
Objective.cpp	Implementation of the Objective class
Objective.h	Definition of Objective, the SBase derived class of the fbc package
operationReturnValues.cpp	Enumeration of values returned by operations within libSBML
operationReturnValues.h	Enumeration of values returned by operations within libSBML
Output.cpp	Implementation of the Output class
Output.h	Implementation of the Output class
OutwardBindingSite.cpp	: Implementation of the OutwardBindingSite class
OutwardBindingSite.h	: Implementation of the OutwardBindingSite class
OverdeterminedValidator.cpp
OverdeterminedValidator.h
Parameter.cpp	Implementations of Parameter and ListOfParameters
Parameter.h	Definitions of Parameter and ListOfParameters
Point.cpp	Implementation of Point for SBML Layout
Point.h	Definition of Point for SBML Layout
Polygon.cpp	Implementation of the Polygon class
Polygon.h	Class representing a polygon
Port.cpp	Implementation of Port, the SBase-derived class of the comp package
Port.h	Definition of Port, the SBase derived class of the comp package
PossibleSpeciesFeatureValue.cpp	: Implementation of the PossibleSpeciesFeatureValue class
PossibleSpeciesFeatureValue.h	: Implementation of the PossibleSpeciesFeatureValue class
PrefixTransformer.cpp
PrefixTransformer.h
Priority.cpp	Implementation of Priority
Priority.h	Definition of Priority
QualConsistencyValidator.cpp
QualConsistencyValidator.h
QualExtension.cpp	Implementation of QualExtension, the core module of qual package
QualExtension.h	Definition of QualExtension, the core module of qual package
QualExtensionTypes.h	Include all SBML types of qual extension in a single header file
qualfwd.h	SBML Qual C structure declarations
QualIdentifierConsistencyValidator.cpp
QualIdentifierConsistencyValidator.h
QualitativeSpecies.cpp	Implementation of the QualitativeSpecies class
QualitativeSpecies.h	Implementation of the QualitativeSpecies class
QualMathConsistencyValidator.cpp
QualMathConsistencyValidator.h
QualModelPlugin.cpp	Implementation of QualModelPlugin, the plugin class of qual package for the Model element
QualModelPlugin.h	Definition of QualModelPlugin, the plugin class of qual package for the Model element
QualSBMLDocumentPlugin.cpp	Implementation of QualSBMLDocumentPlugin, the plugin class of qual package for the SBase element
QualSBMLDocumentPlugin.h	Implementation of the QualSBMLDocumentPlugin class
QualSBMLError.h	Represents SBML errors and other diagnostics
QualSBMLErrorTable.h	Represents SBML errors and other diagnostics
QualValidator.cpp	Base class for SBML Validators
QualValidator.h	Implementation of the QualValidator class
RadialGradient.cpp	Implementation of the RadialGradient class
RadialGradient.h	Definition of the RadialGradient class
RateRule.cpp	Implementations of RateRule
RateRule.h	Definitions of RateRule
RDFAnnotation.h	RDFAnnotation I/O
RDFAnnotationParser.cpp	RDFAnnotation I/O
RDFAnnotationParser.h
Reaction.cpp	Implementations of Reaction and ListOfReactions
Reaction.h	Definitions of Reaction and ListOfReactions
ReactionGlyph.cpp	Implementation of ReactionGlyph for SBML Layout
ReactionGlyph.h	Definition of ReactionGlyph for SBML Layout
Rectangle.cpp	Implementation of the Rectangle class
Rectangle.h	Definition of the Rectangle class
ReferenceGlyph.cpp	Implementation of ReferenceGlyph for SBML Layout
ReferenceGlyph.h	Definition of ReferenceGlyph for SBML Layout
RegisterConverters.cpp	Registers all available converters
RegisterExtensions.h
RelAbsVector.cpp	Class for representing coordinates that can have a relative and an absolute part
RelAbsVector.h	Definition of the RelAbsVector class
RenderConsistencyValidator.cpp
RenderConsistencyValidator.h
RenderCubicBezier.cpp	Implementation of the RenderCubicBezier class
RenderCubicBezier.h	Definition of the RenderCubicBezier class
RenderCurve.cpp	Implementation of the RenderCurve class
RenderCurve.h	Definition of the RenderCurve class
RenderExtension.cpp	Implementation of RenderExtension, the core module of the render package
RenderExtension.h	Definition of RenderExtension, the core module of the render package
RenderExtensionTypes.h	Definition of RenderExtensionTypes
renderfwd.h	Definition of renderfwd
RenderGraphicalObjectPlugin.cpp	Implementation of RenderGraphicalObjectPlugin, the plugin class of the render package for the GraphicalObject element
RenderGraphicalObjectPlugin.h	Definition of RenderGraphicalObjectPlugin, the plugin class of the render package for the GraphicalObject element
RenderGroup.cpp	Implementation of the RenderGroup class
RenderGroup.h	Definition of the RenderGroup class
RenderIdentifierConsistencyValidator.cpp
RenderIdentifierConsistencyValidator.h
RenderInformationBase.cpp	Implementation of the RenderInformationBase class
RenderInformationBase.h	Definition of the RenderInformationBase class
RenderLayoutConverter.cpp	Simple converter to convert Layout + Render from l2 to L3 and vice versa
RenderLayoutConverter.h	Simple converter to convert Layout + Render from l2 to L3 and vice versa
RenderLayoutPlugin.cpp	Implementation of RenderLayoutPlugin, the plugin class of the fbc package for the Model element
RenderLayoutPlugin.h	Definition of RenderLayoutPlugin, the plugin class of fbc package for the Model element
RenderListOfLayoutsPlugin.cpp	Implementation of RenderListOfLayoutsPlugin, the plugin class of the fbc package for the Model element
RenderListOfLayoutsPlugin.h	Definition of RenderListOfLayoutsPlugin, the plugin class of fbc package for the Model element
RenderPoint.cpp	Implementation of the RenderPoint class
RenderPoint.h	Definition of the RenderPoint class
RenderSBMLDocumentPlugin.cpp	Implementation of the RenderSBMLDocumentPlugin class
RenderSBMLDocumentPlugin.h	Definition of the RenderSBMLDocumentPlugin class
RenderSBMLError.h	Definition of the RenderSBMLError class
RenderSBMLErrorTable.h	Definition of the RenderSBMLErrorTable class
RenderUtilities.cpp	Implementation of RenderUtilities, a class of utility functions for the render package
RenderUtilities.h	Definition of RenderUtilities, a class of utility functions for the render package
RenderValidator.cpp	Definition of RenderValidator
RenderValidator.h	Definition of RenderValidator
ReplacedBy.cpp	Implementation of ReplacedBy, the SBaseRef derived class of the comp package
ReplacedBy.h	Definition of ReplacedBy, the Replacing-derived class of the comp package
ReplacedElement.cpp	Implementation of ReplacedElement, the Subelement derived class of replacedElements package
ReplacedElement.h	Definition of ReplacedElement, the SBase derived class of replacedElements package
Replacing.cpp	Implementation of Replacing, the SBaseRef derived class of Replacings package
Replacing.h	Definition of Replacing, the SBaseRef-derived class of the comp package
Rule.cpp	Implementations of Rule and ListOfRules
Rule.h	Definitions of Rule and ListOfRules
SBase.cpp	Implementation of SBase, the base object of all SBML objects
SBase.h	Definition of SBase, the base object of all SBML objects
SBaseExtensionPoint.cpp
SBaseExtensionPoint.h	Implementation of SBaseExtensionPoint
SBasePlugin.cpp	Implementation of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package
SBasePlugin.h	Definition of SBasePlugin, the base class of extension entities plugged in SBase derived classes in the SBML Core package
SBasePluginCreator.h	Template class for SBasePlugin-based classes
SBasePluginCreatorBase.cpp	Implementation of SBasePluginCreatorBase, the base class of SBasePlugin creator classes
SBasePluginCreatorBase.h	Definition of SBasePluginCreatorBase, the base class of SBasePlugin creator classes
SBaseRef.cpp	Implementation of SBaseRef, the SBase-derived class of the comp package
SBaseRef.h	Definition of SBaseRef, the SBase derived class of the comp package
SBMLConstructorException.cpp	Implementation of SBMLConstructorException, the exception class for constructor exceptions
SBMLConstructorException.h	Definition of SBMLConstructorException, the exception class for constructor exceptions
SBMLConvert.cpp	Performs conversion between SBML levels
SBMLConverter.cpp	Implementation of SBMLConverter, the base class of package extensions
SBMLConverter.h	Definition of SBMLConverter, the base class for SBML conversion
SBMLConverterRegister.h	Definition of SBMLConverterRegister, a template to register converters
SBMLConverterRegistry.cpp
SBMLConverterRegistry.h	Implementation of SBMLConverterRegistry, a registry of available converters
SBMLConverterTypes.h	Definition of SBMLConverterTypes
SBMLDocument.cpp	Implementation of the top-level container for an SBML Model and associated data
SBMLDocument.h	Top-level container for an SBML Model and associated data
SBMLDocumentPlugin.cpp	Implementation of SBMLDocumentPlugin, the derived class of SBasePlugin
SBMLDocumentPlugin.h	Definition of SBMLDocumentPlugin, the derived class of SBasePlugin
SBMLDocumentPluginNotRequired.cpp	Implementation of SBMLDocumentPluginNotRequired, the plugin class of layout package for the Model element
SBMLDocumentPluginNotRequired.h	Definition of SBMLDocumentPluginNotRequired, the plugin class of layout package for the SBMLDocument element, whose 'required' attribute must be 'false'
SBMLError.cpp	Represents SBML errors and other diagnostics
SBMLError.h	Represents SBML errors and other diagnostics
SBMLErrorLog.cpp	Stores errors (and messages) encountered while processing SBML
SBMLErrorLog.h	Stores errors (and messages) encountered while processing SBML
SBMLErrorTable.h	Represents SBML errors and other diagnostics
SBMLExtension.cpp	Implementation of SBMLExtension, the base class of package extensions
SBMLExtension.h	Definition of SBMLExtension, the core component of SBML package extension
SBMLExtensionException.cpp	SBMLExtensionException class, the exception class for package extension
SBMLExtensionException.h	Class of exceptions thrown in some situations
SBMLExtensionNamespaces.cpp	Implementation of C-API for the SBMLExtensionNamespaces class
SBMLExtensionNamespaces.h	Class to store the SBML Level, Version and namespace of a package
SBMLExtensionRegister.h	Template class for registering extension packages
SBMLExtensionRegistry.cpp	Implementation of SBMLExtensionRegistry, the registry class in which extension packages are registered
SBMLExtensionRegistry.h	The registry class for tracking package extensions
SBMLExternalValidator.cpp
SBMLExternalValidator.h
SBMLFileResolver.cpp	Implementation of SBMLFileResolver, the file system based resolver for SBML Documents
SBMLFileResolver.h	A file-based resolver for SBML Documents
SBMLFunctionDefinitionConverter.cpp
SBMLFunctionDefinitionConverter.h	Definition of SBMLFunctionDefinitionConverter, a converter replacing function definitions
sbmlfwd.h	Forward declarations for all opaque C types
SBMLIdConverter.cpp	Implementation of SBMLIdConverter, a converter renaming SIds
SBMLIdConverter.h	Definition of SBMLIdConverter, a converter renaming SIds
SBMLInferUnitsConverter.cpp	Implementation of SBMLInferUnitsConverter
SBMLInferUnitsConverter.h	Definition of SBMLInferUnitsConverter, infers units for parameters
SBMLInitialAssignmentConverter.cpp	Implementation of SBMLInitialAssignmentConverter, a converter inlining initial assignments
SBMLInitialAssignmentConverter.h	Definition of SBMLInitialAssignmentConverter, a converter inlining function definitions
SBMLInternalValidator.cpp	Implementation of SBMLInternalValidator, the validator for all internal validation performed by libSBML
SBMLInternalValidator.h	Definition of SBMLInternalValidator, the validator for all internal validation performed by libSBML
SBMLLevel1Version1Converter.cpp	Implementation of SBMLLevel1Version1Converter
SBMLLevel1Version1Converter.h	Definition of SBMLLevel1Version1Converter
SBMLLevelVersionConverter.cpp	Implementation of SBMLFunctionDefinitionConverter, a converter replacing function definitions
SBMLLevelVersionConverter.h	Definition of SBMLLevelVersionConverter, the base class for SBML conversion
SBMLLocalParameterConverter.cpp	Implementation of SBMLLocalParameterConverter, a converter replacing local parameters with global ones
SBMLLocalParameterConverter.h	Definition of SBMLLocalParameterConverter, a converter replacing local parameters with global ones
SBMLNamespaces.cpp	SBMLNamespaces class to store level/version and namespace
SBMLNamespaces.h	SBMLNamespaces class to store level/version and namespace
SBMLRateOfConverter.cpp	Implementation of SBMLRateOfConverter, a converter changing 'rateOf' into functionDefinition
SBMLRateOfConverter.h	Definition of SBMLRateOfConverter, a converter changing reactions into rate rules
SBMLReactionConverter.cpp	Implementation of SBMLReactionConverter, a converter changing reactions into rate rules
SBMLReactionConverter.h	Definition of SBMLReactionConverter, a converter changing reactions into rate rules
SBMLReader.cpp	Reads an SBML Document into memory
SBMLReader.h	Reads an SBML Document into memory
SBMLResolver.cpp	Implementation of SBMLResolver, the base class of package extensions
SBMLResolver.h	Definition of SBMLResolver, the base class for resolving SBML documents
SBMLResolverRegistry.cpp
SBMLResolverRegistry.h	Implementation of SBMLResolverRegistry, a registry of available resolvers
SBMLRuleConverter.cpp
SBMLRuleConverter.h	Definition of SBMLRuleConverter, a converter sorting rules
SBMLStripPackageConverter.cpp	Implementation of SBMLStripPackageConverter, the base class of package extensions
SBMLStripPackageConverter.h	Definition of SBMLStripPackageConverter, the base class for SBML conversion
SBMLTransforms.cpp	Transform functions
SBMLTransforms.h
SBMLTypeCodes.cpp	Enumeration to identify SBML objects at runtime
SBMLTypeCodes.h	Enumeration to identify SBML objects at runtime
SBMLTypes.h	Include all SBML types in a single header file
SBMLUnitsConverter.cpp	Implementation of SBMLUnitsConverter, for converting units to SI
SBMLUnitsConverter.h	Definition of SBMLUnitsConverter, for converting units to SI
SBMLUri.cpp	Implementation of SBMLUri, the utility class for handling uris
SBMLUri.h	Definition of SBMLUri, the utility class for handling URIs
SBMLValidator.cpp	Implementation of SBMLValidator, the base class for user callable SBML validators
SBMLValidator.h	Definition of SBMLValidator, the base class for user callable SBML validators
SBMLVisitor.cpp	Visitor Design Pattern for the SBML object tree
SBMLVisitor.h	Visitor Design Pattern for the SBML object tree
SBMLWriter.cpp	Writes an SBML Document to file or in-memory string
SBMLWriter.h	Writes an SBML Document to file or in-memory string
SBO.cpp	SBO utility functions
SBO.h	SBO utility Function
SBOConsistencyValidator.cpp
SBOConsistencyValidator.h
SimpleSpeciesReference.cpp	Implementation of SimpleSpeciesReference
SimpleSpeciesReference.h	Definitions of SimpleSpeciesReference
Species.cpp	Implementations of Species and ListOfSpecies
Species.h	Definitions of Species and ListOfSpecies
SpeciesFeature.cpp	: Implementation of the SpeciesFeature class
SpeciesFeature.h	: Implementation of the SpeciesFeature class
SpeciesFeatureType.cpp	: Implementation of the SpeciesFeatureType class
SpeciesFeatureType.h	: Implementation of the SpeciesFeatureType class
SpeciesFeatureValue.cpp	: Implementation of the SpeciesFeatureValue class
SpeciesFeatureValue.h	: Implementation of the SpeciesFeatureValue class
SpeciesGlyph.cpp	Implementation of SpeciesGlyph for SBML Layout
SpeciesGlyph.h	Definition of SpeciesGlyph for SBML Layout
SpeciesReference.cpp	Implementation of SpeciesReference and ListOfSpeciesReferences
SpeciesReference.h	Definitions of SpeciesReference and ListOfSpeciesReferences
SpeciesReferenceGlyph.cpp	Implementation of SpeciesReferenceGlyph for SBML Layout
SpeciesReferenceGlyph.h	Definition of SpeciesReferenceGlyph for SBML Layout
SpeciesReferenceRole.h	Definition of SpeciesReferenceRole enum for SBML Layout
SpeciesType.cpp	Implementation of SpeciesType and ListOfSpeciesTypes
SpeciesType.h	Definitions of SpeciesType and ListOfSpeciesType
SpeciesTypeComponentIndex.cpp	: Implementation of the SpeciesTypeComponentIndex class
SpeciesTypeComponentIndex.h	: Implementation of the SpeciesTypeComponentIndex class
SpeciesTypeComponentMapInProduct.cpp	: Implementation of the SpeciesTypeComponentMapInProduct class
SpeciesTypeComponentMapInProduct.h	: Implementation of the SpeciesTypeComponentMapInProduct class
SpeciesTypeInstance.cpp	: Implementation of the SpeciesTypeInstance class
SpeciesTypeInstance.h	: Implementation of the SpeciesTypeInstance class
Stack.c
Stack.h
StoichiometryMath.cpp	Implementation of StoichiometryMath
StoichiometryMath.h	Definition of StoichiometryMath
StrictUnitConsistencyValidator.cpp
StrictUnitConsistencyValidator.h
StringBuffer.c
StringBuffer.h
Style.cpp	Implementation of the Style class
Style.h	Definition of the Style class
SubListOfSpeciesFeatures.cpp
SubListOfSpeciesFeatures.h	: Implementation of the SubListOfSpeciesFeatures class
Submodel.cpp	Implementation of Submodel, the SBase-derived class of the comp package
Submodel.h	Definition of Submodel, the SBase derived class of the comp package
SyntaxChecker.cpp	Syntax checking functions
SyntaxChecker.h	Syntax checking functions
Text.cpp	Implementation of the Text class
Text.h	Definition of the Text class
TextGlyph.cpp	Implementation of TextGlyph for SBML Layout
TextGlyph.h	Definition of TextGlyph for SBML Layout
Transformation.cpp	Class representing a 3D affine transformation
Transformation.h	Abstract class for representing 3D affine transformations
Transformation2D.cpp	Class representing a 2D affine transformation
Transformation2D.h	Abstract base class for representing 2D affine transformations
Transition.cpp	Implementation of the Transition class
Transition.h	Implementation of the Transition class
Trigger.cpp	Implementation of Trigger
Trigger.h	Definition of Trigger
Unit.cpp	Implementations of Unit and ListOfUnits
Unit.h	Definitions of Unit and ListOfUnits
UnitConsistencyValidator.cpp
UnitConsistencyValidator.h
UnitDefinition.cpp	Implementations of SBML's UnitDefinition and ListOfUnitDefinitions
UnitDefinition.h	Definitions of UnitDefinition and ListOfUnitDefinitions
UnitKind.c	SBML UnitKind enumeration
UnitKind.h	Definition of SBML's UnitKind enumeration
util.cpp	Utility functions
util.h	Utility functions
Validator.cpp	Base class for SBML Validators
Validator.h	Base class for SBML Validators
VConstraint.cpp	Base class for all SBML Validator Constraints
VConstraint.h	Base class for all SBML Validator Constraints
XercesAttributes.cpp
XercesAttributes.h
XercesHandler.cpp
XercesHandler.h
XercesNamespaces.cpp
XercesNamespaces.h
XercesParser.cpp
XercesParser.h
XercesTranscode.cpp
XercesTranscode.h
XMLAttributes.cpp	XMLAttributes are a list of name/value pairs for XMLElements
XMLAttributes.h	XMLAttributes are a list of name/value pairs for XML elements
XMLBuffer.cpp
XMLBuffer.h
XMLConstructorException.cpp	XMLConstructorException an exception thrown by XML classes
XMLConstructorException.h	XMLConstructorException an exception thrown by XML classes
XMLError.cpp	Represents errors (and messages) encountered during an XML parse
XMLError.h	Represents errors (and messages) encountered during an XML parse
XMLErrorLog.cpp	Stores errors (and messages) encountered while processing XML
XMLErrorLog.h	Stores errors (and messages) encountered while processing XML
XMLExtern.h	Defines LIBLAX_EXTERN
XMLFileBuffer.cpp
XMLFileBuffer.h
XMLHandler.cpp
XMLHandler.h
XMLInputStream.cpp
XMLInputStream.h	XMLInputStream
XMLLogOverride.cpp	Utility class implementing a temporary override the severity on error logs
XMLLogOverride.h	Utility class implementing a temporary override the severity on error logs
XMLMemoryBuffer.cpp
XMLMemoryBuffer.h
XMLNamespaces.cpp	A list of XMLNamespace declarations (URI/prefix pairs)
XMLNamespaces.h	A list of XMLNamespace declarations (URI/prefix pairs)
XMLNode.cpp	A node in an XML document tree
XMLNode.h	Class definition of XMLNode, a node in an XML document tree
XMLOutputStream.cpp
XMLOutputStream.h	XMLOutputStream
XMLParser.cpp
XMLParser.h
XMLToken.cpp	A unit of XML syntax, either an XML element or text
XMLToken.h	A unit of XML syntax, either an XML element or text
XMLTokenizer.cpp
XMLTokenizer.h
XMLTriple.cpp	Stores an XML namespace triple
XMLTriple.h	Stores an XML namespace triple