| addCVTerm(CVTerm *term, bool newBag=false) | SBase | |
| appendAnnotation(const XMLNode *annotation) | SpeciesReference | virtual |
| appendAnnotation(const std::string &annotation) | SpeciesReference | virtual |
| appendNotes(const XMLNode *notes) | SBase | |
| appendNotes(const std::string ¬es) | SBase | |
| clone() const | SpeciesReference | virtual |
| createStoichiometryMath() | SpeciesReference | |
| deleteDisabledPlugins(bool recursive=true) | SBase | |
| disablePackage(const std::string &pkgURI, const std::string &pkgPrefix) | SBase | |
| enablePackage(const std::string &pkgURI, const std::string &pkgPrefix, bool flag) | SBase | |
| getAllElements(ElementFilter *filter=NULL) | SBase | virtual |
| getAllElementsFromPlugins(ElementFilter *filter=NULL) | SBase | virtual |
| getAncestorOfType(int type, const std::string &pkgName="core") | SBase | |
| getAncestorOfType(int type, const std::string pkgName="core") const | SBase | |
| getAnnotation() | SBase | |
| getAnnotation() const | SBase | |
| getAnnotationString() | SBase | |
| getAnnotationString() const | SBase | |
| getColumn() const | SBase | |
| getConstant() const | SpeciesReference | |
| getCVTerm(unsigned int n) | SBase | |
| getCVTerms() | SBase | |
| getCVTerms() const | SBase | |
| getDenominator() const | SpeciesReference | |
| getDisabledPlugin(unsigned int n) | SBase | |
| getDisabledPlugin(unsigned int n) const | SBase | |
| getElementByMetaId(const std::string &metaid) | SBase | virtual |
| getElementByMetaId(const std::string &metaid) const | SBase | |
| getElementBySId(const std::string &id) | SBase | virtual |
| getElementBySId(const std::string &id) const | SBase | |
| getElementName() const | SpeciesReference | virtual |
| getId() const | SimpleSpeciesReference | virtual |
| getIdAttribute() const | SBase | |
| getLevel() const | SBase | |
| getLine() const | SBase | |
| getMetaId() const | SBase | |
| getMetaId() | SBase | |
| getModel() const | SBase | |
| getModelHistory() const | SBase | |
| getModelHistory() | SBase | |
| getName() const | SimpleSpeciesReference | virtual |
| getNamespaces() const | SBase | virtual |
| getNotes() | SBase | |
| getNotes() const | SBase | |
| getNotesString() | SBase | |
| getNotesString() const | SBase | |
| getNumCVTerms() | SBase | |
| getNumDisabledPlugins() const | SBase | |
| getNumPlugins() const | SBase | |
| getPackageCoreVersion() const | SBase | |
| getPackageName() const | SBase | |
| getPackageVersion() const | SBase | |
| getParentSBMLObject() | SBase | |
| getParentSBMLObject() const | SBase | |
| getPlugin(const std::string &package) | SBase | |
| getPlugin(const std::string &package) const | SBase | |
| getPlugin(unsigned int n) | SBase | |
| getPlugin(unsigned int n) const | SBase | |
| getPrefix() const | SBase | |
| getResourceBiologicalQualifier(std::string resource) | SBase | |
| getResourceModelQualifier(std::string resource) | SBase | |
| getSBMLDocument() const | SBase | |
| getSBMLDocument() | SBase | |
| getSBOTerm() const | SBase | |
| getSBOTermAsURL() const | SBase | |
| getSBOTermID() const | SBase | |
| getSpecies() const | SimpleSpeciesReference | |
| getStoichiometry() const | SpeciesReference | |
| getStoichiometryMath() const | SpeciesReference | |
| getStoichiometryMath() | SpeciesReference | |
| getTypeCode() const | SpeciesReference | virtual |
| getURI() const | SBase | |
| getUserData() const | SBase | |
| getVersion() const | SBase | |
| hasRequiredAttributes() const | SpeciesReference | virtual |
| hasValidLevelVersionNamespaceCombination() | SBase | |
| initDefaults() | SpeciesReference | |
| isModifier() const | SimpleSpeciesReference | |
| isPackageEnabled(const std::string &pkgName) const | SBase | |
| isPackageURIEnabled(const std::string &pkgURI) const | SBase | |
| isPkgEnabled(const std::string &pkgName) const | SBase | |
| isPkgURIEnabled(const std::string &pkgURI) const | SBase | |
| isSetAnnotation() const | SBase | |
| isSetConstant() const | SpeciesReference | |
| isSetId() const | SimpleSpeciesReference | virtual |
| isSetIdAttribute() const | SBase | |
| isSetMetaId() const | SBase | |
| isSetModelHistory() | SBase | |
| isSetName() const | SimpleSpeciesReference | virtual |
| isSetNotes() const | SBase | |
| isSetSBOTerm() const | SBase | |
| isSetSpecies() const | SimpleSpeciesReference | |
| isSetStoichiometry() const | SpeciesReference | |
| isSetStoichiometryMath() const | SpeciesReference | |
| isSetUserData() const | SBase | |
| matchesRequiredSBMLNamespacesForAddition(const SBase *sb) | SBase | |
| matchesRequiredSBMLNamespacesForAddition(const SBase *sb) const | SBase | |
| matchesSBMLNamespaces(const SBase *sb) | SBase | |
| matchesSBMLNamespaces(const SBase *sb) const | SBase | |
| operator=(const SpeciesReference &rhs) | SpeciesReference | |
| SimpleSpeciesReference::operator=(const SimpleSpeciesReference &rhs) | SimpleSpeciesReference | |
| SBase::operator=(const SBase &rhs) | SBase | |
| read(XMLNode &node, XMLErrorSeverityOverride_t flag=LIBSBML_OVERRIDE_DISABLED) | SBase | |
| removeFromParentAndDelete() | SBase | virtual |
| removeTopLevelAnnotationElement(const std::string &elementName, const std::string elementURI="", bool removeEmpty=true) | SBase | |
| renameMetaIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
| renameSIdRefs(const std::string &oldid, const std::string &newid) | SimpleSpeciesReference | virtual |
| renameUnitSIdRefs(const std::string &oldid, const std::string &newid) | SBase | virtual |
| replaceTopLevelAnnotationElement(const XMLNode *annotation) | SBase | |
| replaceTopLevelAnnotationElement(const std::string &annotation) | SBase | |
| setAnnotation(const XMLNode *annotation) | SpeciesReference | virtual |
| setAnnotation(const std::string &annotation) | SpeciesReference | virtual |
| setConstant(bool flag) | SpeciesReference | |
| setDenominator(int value) | SpeciesReference | |
| setElementText(const std::string &text) | SBase | protectedvirtual |
| setId(const std::string &sid) | SimpleSpeciesReference | virtual |
| setIdAttribute(const std::string &sid) | SBase | virtual |
| setMetaId(const std::string &metaid) | SBase | |
| setModelHistory(ModelHistory *history) | SBase | |
| setName(const std::string &name) | SimpleSpeciesReference | virtual |
| setNamespaces(XMLNamespaces *xmlns) | SBase | |
| setNotes(const XMLNode *notes) | SBase | |
| setNotes(const std::string ¬es, bool addXHTMLMarkup=false) | SBase | |
| setSBOTerm(int value) | SBase | virtual |
| setSBOTerm(const std::string &sboid) | SBase | virtual |
| setSpecies(const std::string &sid) | SimpleSpeciesReference | |
| setStoichiometry(double value) | SpeciesReference | |
| setStoichiometryMath(const StoichiometryMath *math) | SpeciesReference | |
| setUserData(void *userData) | SBase | |
| SimpleSpeciesReference(unsigned int level, unsigned int version) | SimpleSpeciesReference | |
| SimpleSpeciesReference(const SimpleSpeciesReference &orig) | SimpleSpeciesReference | |
| SpeciesReference(unsigned int level, unsigned int version) | SpeciesReference | |
| SpeciesReference(SBMLNamespaces *sbmlns) | SpeciesReference | |
| SpeciesReference(const SpeciesReference &orig) | SpeciesReference | |
| toSBML() | SBase | |
| toXMLNode() | SBase | |
| unsetAnnotation() | SBase | |
| unsetConstant() | SpeciesReference | |
| unsetCVTerms() | SBase | |
| unsetId() | SimpleSpeciesReference | virtual |
| unsetIdAttribute() | SBase | |
| unsetMetaId() | SBase | |
| unsetModelHistory() | SBase | |
| unsetName() | SimpleSpeciesReference | virtual |
| unsetNotes() | SBase | |
| unsetSBOTerm() | SBase | |
| unsetSpecies() | SimpleSpeciesReference | virtual |
| unsetStoichiometry() | SpeciesReference | |
| unsetStoichiometryMath() | SpeciesReference | |
| unsetUserData() | SBase | |
| ~SBase() | SBase | virtual |
| ~SimpleSpeciesReference() | SimpleSpeciesReference | virtual |
| ~SpeciesReference() | SpeciesReference | virtual |
