Constant Field Values

Contents

• org.sbml.*

org.sbml.*

org.sbml.jsbml.AbstractTreeNode

Modifier and Type	Constant Field	Value
public static final String	UNKNOWN_ATTRIBUTES	"unknown.attributes"
public static final String	UNKNOWN_ELEMENTS	"unknown.elements"

org.sbml.jsbml.Annotation

Modifier and Type	Constant Field	Value
public static final transient String	URI_RDF_SYNTAX_NS	"http://www.w3.org/1999/02/22-rdf-syntax-ns#"

org.sbml.jsbml.ASTNode

Modifier and Type	Constant Field	Value
public static final String	IMPLEMENTATION_ASTNODE2	"new ASTNode2"
public static final String	IMPLEMENTATION_HISTORIC	"old ASTNode"
public static final String	IMPLEMENTATION_VERSION	"old ASTNode"
public static final transient String	URI_AVOGADRO_DEFINITION	"http://www.sbml.org/sbml/symbols/avogadro"
public static final transient String	URI_DELAY_DEFINITION	"http://www.sbml.org/sbml/symbols/delay"
public static final transient String	URI_MATHML_DEFINITION	"http://www.w3.org/1998/Math/MathML"
public static final String	URI_MATHML_PREFIX	""
public static final transient String	URI_TIME_DEFINITION	"http://www.sbml.org/sbml/symbols/time"

org.sbml.jsbml.Creator

Modifier and Type	Constant Field	Value
public static final transient String	URI_RDF_VCARD_NS	"http://www.w3.org/2001/vcard-rdf/3.0#"

org.sbml.jsbml.CVTerm

Modifier and Type	Constant Field	Value
public static final String	URI_BIOMODELS_NET_BIOLOGY_QUALIFIERS	"http://biomodels.net/biology-qualifiers/"
public static final String	URI_BIOMODELS_NET_MODEL_QUALIFIERS	"http://biomodels.net/model-qualifiers/"

org.sbml.jsbml.IdentifierException

Modifier and Type	Constant Field	Value
public static final String	DUPLICATE_IDENTIFIER_MSG	"Cannot set duplicate {0}identifier {1} for {2}."

org.sbml.jsbml.JSBML

Modifier and Type	Constant Field	Value
public static final int	DUPLICATE_OBJECT_ID	-6
public static final String	ILLEGAL_UNIT_EXCEPTION_MSG	"Cannot identify unit {0} in the model. Only a valid unit kind or the identifier of an existing unit definition are allowed."
public static final int	INDEX_EXCEEDS_SIZE	-1
public static final int	INVALID_ATTRIBUTE_VALUE	-4
public static final int	INVALID_OBJECT	-5
public static final int	INVALID_XML_OPERATION	-9
public static final int	LEVEL_MISMATCH	-7
public static final int	OPERATION_FAILED	-3
public static final int	OPERATION_SUCCESS	0
public static final String	UNDEFINED_MODEL_MSG	"Cannot access containing model."
public static final String	UNDEFINED_PARSE_ERROR_MSG	"An error occur while creating a parser: %s."
public static final String	UNDEFINED_PARSING_ERROR_MSG	"An error occur while parsing the file: %s."
public static final int	UNEXPECTED_ATTRIBUTE	-2
public static final transient String	URI_PURL_ELEMENTS	"http://purl.org/dc/elements/1.1/"
public static final transient String	URI_PURL_TERMS	"http://purl.org/dc/terms/"
public static final transient String	URI_XHTML_DEFINITION	"http://www.w3.org/1999/xhtml"
public static final int	VERSION_MISMATCH	-8

org.sbml.jsbml.LevelVersionError

Modifier and Type	Constant Field	Value
public static final String	LEVEL_MISMATCH_MSG	"Level mismatch between {0} in Level {1,number,integer} and {2} in Level {3,number,integer}"
public static final String	PACKAGE_VERSION_MISMATCH_MSG	"Package \'{4}\' Version mismatch between {0} in Version {1,number,integer} and {2} in Version {3,number,integer}."
public static final String	UNDEFINED_LEVEL_VERSION_COMBINATION_MSG	"Undefined combination of Level {0,number,integer} and Version {1,number,integer}."
public static final String	VERSION_MISMATCH_MSG	"Version mismatch between {0} in Version {1,number,integer} and {2} in Version {3,number,integer}."

org.sbml.jsbml.PropertyNotAvailableException

Modifier and Type	Constant Field	Value
public static final String	PROPERTY_UNDEFINED_EXCEPTION_MSG	"Property {0} is not defined in {1} for Level {2,number,integer} and Version {3,number,integer}."

org.sbml.jsbml.PropertyUndefinedError

Modifier and Type	Constant Field	Value
public static final String	PROPERTY_UNDEFINED_EXCEPTION_MSG_SBASE	"The value for property {0} is not defined in {1} for Level {2,number,integer} and Version {3,number,integer}."
public static final String	PROPERTY_UNDEFINED_EXCEPTION_MSG_TREE_NODE	"The value for property {0} is not defined in {1}."

org.sbml.jsbml.SBMLDocument

Modifier and Type	Constant Field	Value
public static final transient String	URI_NAMESPACE_L1	"http://www.sbml.org/sbml/level1"
public static final transient String	URI_NAMESPACE_L2V1	"http://www.sbml.org/sbml/level2"
public static final String	URI_NAMESPACE_L2V2	"http://www.sbml.org/sbml/level2/version2"
public static final transient String	URI_NAMESPACE_L2V3	"http://www.sbml.org/sbml/level2/version3"
public static final transient String	URI_NAMESPACE_L2V4	"http://www.sbml.org/sbml/level2/version4"
public static final transient String	URI_NAMESPACE_L2V5	"http://www.sbml.org/sbml/level2/version5"
public static final transient String	URI_NAMESPACE_L3V1Core	"http://www.sbml.org/sbml/level3/version1/core"
public static final transient String	URI_NAMESPACE_L3V2Core	"http://www.sbml.org/sbml/level3/version2/core"

org.sbml.jsbml.UnitDefinition

Modifier and Type	Constant Field	Value
public static final String	AREA	"area"
public static final String	BASE_UNIT_SUFFIX	"_base"
public static final String	EXTENT	"extent"
public static final String	LENGTH	"length"
public static final long	serialVersionUID	-4705380036260408123L
public static final String	SUBSTANCE	"substance"
public static final String	TIME	"time"
public static final String	VOLUME	"volume"

org.sbml.jsbml.ext.arrays.ArraysConstants

Modifier and Type	Constant Field	Value
public static final String	arrayDimension	"arrayDimension"
public static final String	dimension	"dimension"
public static final String	index	"index"
public static final String	listOfDimensions	"listOfDimensions"
public static final String	listOfIndices	"listOfIndices"
public static final String	math	"math"
public static final int	MIN_SBML_LEVEL	3
public static final int	MIN_SBML_VERSION	1
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/arrays/version1"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/arrays/version1"
public static final String	referencedAttribute	"referencedAttribute"
public static final String	shortLabel	"arrays"
public static final String	size	"size"

org.sbml.jsbml.ext.comp.CompConstants

Modifier and Type	Constant Field	Value
public static final String	conversionFactor	"conversionFactor"
public static final String	deletion	"deletion"
public static final String	extentConversionFactor	"extentConversionFactor"
public static final String	idRef	"idRef"
public static final String	listOfDeletions	"listOfDeletions"
public static final String	listOfExternalModelDefinitions	"listOfExternalModelDefinitions"
public static final String	listOfModelDefinitions	"listOfModelDefinitions"
public static final String	listOfPorts	"listOfPorts"
public static final String	listOfReplacedElements	"listOfReplacedElements"
public static final String	listOfSubmodels	"listOfSubmodels"
public static final String	md5	"md5"
public static final String	metaIdRef	"metaIdRef"
public static final int	MIN_SBML_LEVEL	3
public static final int	MIN_SBML_VERSION	1
public static final String	modelRef	"modelRef"
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/comp/version1"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/comp/version1"
public static final String	packageName	"Hierarchical Model Composition"
public static final String	portRef	"portRef"
public static final String	replacedBy	"replacedBy"
public static final String	replacedElement	"replacedElement"
public static final String	sBaseRef	"sBaseRef"
public static final String	shortLabel	"comp"
public static final String	source	"source"
public static final String	submodelRef	"submodelRef"
public static final String	timeConversionFactor	"timeConversionFactor"
public static final String	unitRef	"unitRef"

org.sbml.jsbml.ext.distrib.DistribConstants

Modifier and Type	Constant Field	Value
public static final String	distribInput	"distribInput"
public static final String	drawFromDistribution	"drawFromDistribution"
public static final String	index	"index"
public static final String	listOfDistribInputs	"listOfDistribInputs"
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/distrib/version1"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/distrib/version1"
public static final String	shortLabel	"distrib"
public static final String	UNCERT_ML_URI_L3	"http://www.uncertml.org/3.0"
public static final String	uncertainty	"uncertainty"
public static final String	uncertML	"UncertML"

org.sbml.jsbml.ext.dyn.DynConstants

Modifier and Type	Constant Field	Value
public static final String	applyToAll	"applyToAll"
public static final String	cboTerm	"cboTerm"
public static final String	dynElement	"dynElement"
public static final String	idRef	"idRef"
public static final String	listOfDynElements	"listOfDynElements"
public static final String	listOfSpatialComponents	"listOfSpatialComponents"
public static final String	metaIdRef	"metaIdRef"
public static final int	MIN_SBML_LEVEL	3
public static final int	MIN_SBML_VERSION	1
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/dyn/version1"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/dyn/version1"
public static final int	PACKAGE_VERSION	1
public static final String	shortLabel	"dyn"
public static final String	spatialComponent	"spatialComponent"
public static final String	spatialIndex	"spatialIndex"
public static final String	variable	"variable"

org.sbml.jsbml.ext.fbc.FBCConstants

Modifier and Type	Constant Field	Value
public static final String	activeObjective	"activeObjective"
public static final String	and	"and"
public static final String	associatedSpecies	"associatedSpecies"
public static final String	association	"association"
public static final String	charge	"charge"
public static final String	chemicalFormula	"chemicalFormula"
public static final String	coefficient	"coefficient"
public static final String	fluxBound	"fluxBound"
public static final String	fluxObjective	"fluxObjective"
public static final String	geneProduct	"geneProduct"
public static final String	geneProductAssociation	"geneProductAssociation"
public static final String	geneProductIdentifier	"geneProductIdentifier"
public static final String	geneProductReference	"geneProductRef"
public static final String	geneProteinAssociation	"geneProteinAssociation"
public static final String	label	"label"
public static final String	leftChild	"leftChild"
public static final String	listOfFluxes	"listOfFluxes"
public static final String	listOfFluxObjectives	"listOfFluxObjectives"
public static final String	listOfGeneProducts	"listOfGeneProducts"
public static final String	listOfObjectives	"listOfObjectives"
public static final String	lowerFluxBound	"lowerFluxBound"
public static final int	MIN_SBML_LEVEL	3
public static final int	MIN_SBML_VERSION	1
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/fbc/version2"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/fbc/version1"
public static final String	namespaceURI_L3V1V2	"http://www.sbml.org/sbml/level3/version1/fbc/version2"
public static final String	objective	"objective"
public static final String	operation	"operation"
public static final String	or	"or"
public static final String	packageName	"Flux Balance Constraints"
public static final String	reaction	"reaction"
public static final String	rightChild	"rightChild"
public static final String	shortLabel	"fbc"
public static final String	strict	"strict"
public static final String	type	"type"
public static final String	upperFluxBound	"upperFluxBound"
public static final String	value	"value"

org.sbml.jsbml.ext.groups.GroupsConstants

Modifier and Type	Constant Field	Value
public static final String	distinctAttribute	"distinctAttribute"
public static final String	identicalAttribute	"identicalAttribute"
public static final String	idRef	"idRef"
public static final String	memberConstraint	"memberConstraint"
public static final String	membersShareType	"membersShareType"
public static final String	metaIdRef	"metaIdRef"
public static final int	MIN_SBML_LEVEL	3
public static final int	MIN_SBML_VERSION	1
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/groups/version1"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/groups/version1"
public static final String	shortLabel	"groups"

org.sbml.jsbml.ext.layout.LayoutConstants

Modifier and Type	Constant Field	Value
public static final String	basePoint1	"basePoint1"
public static final String	basePoint2	"basePoint2"
public static final String	boundingBox	"boundingBox"
public static final String	compartment	"compartment"
public static final String	compartmentGlyph	"compartmentGlyph"
public static final String	curve	"curve"
public static final String	curveSegment	"curveSegment"
public static final String	depth	"depth"
public static final String	dimensions	"dimensions"
public static final String	end	"end"
public static final String	generalGlyph	"generalGlyph"
public static final String	glyph	"glyph"
public static final String	graphicalObject	"graphicalObject"
public static final String	height	"height"
public static final String	layout	"layout"
public static final String	listOfAdditionalGraphicalObjects	"listOfAdditionalGraphicalObjects"
public static final String	listOfCompartmentGlyphs	"listOfCompartmentGlyphs"
public static final String	listOfCurveSegments	"listOfCurveSegments"
public static final String	listOfGeneralGlyphs	"listOfGeneralGlyphs"
public static final String	listOfLayouts	"listOfLayouts"
public static final String	listOfReactionGlyphs	"listOfReactionGlyphs"
public static final String	listOfReferenceGlyphs	"listOfReferenceGlyphs"
public static final String	listOfSpeciesGlyphs	"listOfSpeciesGlyphs"
public static final String	listOfSpeciesReferenceGlyphs	"listOfSpeciesReferenceGlyphs"
public static final String	listOfSubGlyphs	"listOfSubGlyphs"
public static final String	listOfTextGlyphs	"listOfTextGlyphs"
public static final String	metaidRef	"metaidRef"
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/layout/version1"
public static final String	namespaceURI_L2	"http://projects.eml.org/bcb/sbml/level2"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/layout/version1"
public static final String	order	"order"
public static final String	originOfText	"originOfText"
public static final String	packageName	"Layout"
public static final String	position	"position"
public static final String	reaction	"reaction"
public static final String	reactionGlyph	"reactionGlyph"
public static final String	reference	"reference"
public static final String	referenceGlyph	"referenceGlyph"
public static final String	role	"role"
public static final String	shortLabel	"layout"
public static final String	species	"species"
public static final String	speciesGlyph	"speciesGlyph"
public static final String	speciesReference	"speciesReference"
public static final String	speciesReferenceGlyph	"speciesReferenceGlyph"
public static final String	start	"start"
public static final String	text	"text"
public static final String	textGlyph	"textGlyph"
public static final String	type	"type"
public static final String	width	"width"
public static final String	x	"x"
public static final String	xsiNamespace	"http://www.w3.org/2001/XMLSchema-instance"
public static final String	xsiShortLabel	"xsi"
public static final String	y	"y"
public static final String	z	"z"

org.sbml.jsbml.ext.multi.MultiConstants

Modifier and Type	Constant Field	Value
public static final String	bindingSite	"bindingSite"
public static final String	bindingSite1	"bindingSite1"
public static final String	bindingSite2	"bindingSite2"
public static final String	bindingSiteReference	"bindingSiteReference"
public static final String	bindingStatus	"bindingStatus"
public static final String	bond	"bond"
public static final String	compartment	"compartment"
public static final String	compartmentReference	"compartmentReference"
public static final String	compartmentType	"compartmentType"
public static final String	component	"component"
public static final String	connex	"connex"
public static final String	containedSpeciesType	"containedSpeciesType"
public static final String	denotedSpeciesTypeComponentIndex	"denotedSpeciesTypeComponentIndex"
public static final String	identifyingParent	"identifyingParent"
public static final String	isType	"isType"
public static final String	listOfBonds	"listOfBonds"
public static final String	listOfCompartmentReferences	"listOfCompartmentReferences"
public static final String	listOfContainedSpeciesTypes	"listOfContainedSpeciesTypes"
public static final String	listOfInSpeciesTypeBonds	"listOfInSpeciesTypeBonds"
public static final String	listOfOutwardBindingSites	"listOfOutwardBindingSites"
public static final String	listOfPossibleSpeciesFeatureValues	"listOfPossibleSpeciesFeatureValues"
public static final String	listOfPossibleValues	"listOfPossibleValues"
public static final String	listOfSelectors	"listOfSelectors"
public static final String	listOfSpeciesFeatureChanges	"listOfSpeciesFeatureChanges"
public static final String	listOfSpeciesFeatures	"listOfSpeciesFeatures"
public static final String	listOfSpeciesFeatureTypes	"listOfSpeciesFeatureTypes"
public static final String	listOfSpeciesFeatureValues	"listOfSpeciesFeatureValues"
public static final String	listOfSpeciesTypeComponentIndexes	"listOfSpeciesTypeComponentIndexes"
public static final String	listOfSpeciesTypeComponentMapInProducts	"listOfSpeciesTypeComponentMapInProducts"
public static final String	listOfSpeciesTypeInstances	"listOfSpeciesTypeInstances"
public static final String	listOfSpeciesTypes	"listOfSpeciesTypes"
public static final String	listOfSpeciesTypeStates	"listOfSpeciesTypeStates"
public static final String	listOfStateFeatureInstances	"listOfStateFeatureInstances"
public static final String	listOfStateFeatures	"listOfStateFeatures"
public static final String	listOfStateFeatureValues	"listOfStateFeatureValues"
public static final String	listOfUnboundBindingSites	"listOfUnboundBindingSites"
public static final String	maxOccur	"maxOccur"
public static final int	MIN_SBML_LEVEL	3
public static final int	MIN_SBML_VERSION	1
public static final String	minOccur	"minOccur"
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/multi/version1"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/multi/version1"
public static final String	numericValue	"numericValue"
public static final String	occur	"occur"
public static final String	occurrence	"occurrence"
public static final String	outwardBindingSite	"outwardBindingSite"
public static final String	packageDisplayName	"Multistate and Multicomponent Species"
public static final String	packageName	"multi"
public static final String	possibleSpeciesFeatureValue	"possibleSpeciesFeatureValue"
public static final String	productComponent	"productComponent"
public static final String	productSpeciesFeature	"productSpeciesFeature"
public static final String	reactant	"reactant"
public static final String	reactantComponent	"reactantComponent"
public static final String	reactantSpeciesFeature	"reactantSpeciesFeature"
public static final String	representationType	"representationType"
public static final String	saturated	"saturated"
public static final String	selector	"selector"
public static final String	shortLabel	"multi"
public static final String	speciesFeatureType	"speciesFeatureType"
public static final String	speciesReference	"speciesReference"
public static final String	speciesType	"speciesType"
public static final String	speciesTypeComponentIndex	"speciesTypeComponentIndex"
public static final String	speciesTypeState	"speciesTypeState"
public static final String	stateFeature	"stateFeature"
public static final String	stateFeatureInstance	"stateFeatureInstance"
public static final String	stateFeatureValue	"stateFeatureValue"
public static final String	value	"value"

org.sbml.jsbml.ext.qual.QualConstants

Modifier and Type	Constant Field	Value
public static final String	compartment	"compartment"
public static final String	constant	"constant"
public static final String	initialLevel	"initialLevel"
public static final String	maxLevel	"maxLevel"
public static final String	name	"name"
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/qual/version1"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/qual/version1"
public static final String	outputLevel	"outputLevel"
public static final String	packageName	"Qualitative"
public static final String	qualitativeSpecies	"qualitativeSpecies"
public static final String	rank	"rank"
public static final String	resultLevel	"resultLevel"
public static final String	shortLabel	"qual"
public static final String	sign	"sign"
public static final String	thresholdLevel	"thresholdLevel"
public static final String	transitionEffect	"transitionEffect"

org.sbml.jsbml.ext.render.RenderConstants

Modifier and Type	Constant Field	Value
public static final String	absoluteCx	"absolute-cy"
public static final String	absoluteCy	"absolute-cx"
public static final String	absoluteCz	"absolute-cz"
public static final String	absoluteFx	"absolute-fx"
public static final String	absoluteFy	"absolute-fy"
public static final String	absoluteFz	"absolute-fz"
public static final String	absoluteHeight	"absolute-height"
public static final String	absoluteR	"absolute-r"
public static final String	absoluteRx	"absolute-rx"
public static final String	absoluteRy	"absolute-ry"
public static final String	absoluteWidth	"absolute-width"
public static final String	absoluteX	"absolute-x"
public static final String	absoluteX1	"absolute-x1"
public static final String	absoluteX2	"absolute-x2"
public static final String	absoluteY	"absolute-y"
public static final String	absoluteY1	"absolute-y1"
public static final String	absoluteY2	"absolute-y2"
public static final String	absoluteZ	"absolute-z"
public static final String	absoluteZ1	"absolute-z1"
public static final String	absoluteZ2	"absolute-z2"
public static final String	backgroundColor	"backgroundColor"
public static final String	boundingBox	"bounding-box"
public static final String	colorDefiniton	"colorDefinition"
public static final String	cx	"cx"
public static final String	cy	"cy"
public static final String	cz	"cz"
public static final String	enableRotationMapping	"enable-rotation-mapping"
public static final String	endHead	"end-head"
public static final String	fill	"fill"
public static final String	fillRule	"fill-rule"
public static final String	fontFamily	"font-family"
public static final String	fontSize	"font-size"
public static final String	fontStyleItalic	"font-style"
public static final String	fontStyleItalicFalse	"normal"
public static final String	fontStyleItalicTrue	"italic"
public static final String	fontWeightBold	"font-weight"
public static final String	fontWeightBoldFalse	"normal"
public static final String	fontWeightBoldTrue	"bold"
public static final String	fx	"fx"
public static final String	fy	"fy"
public static final String	fz	"fz"
public static final String	globalRenderInformation	"globalRenderInformation"
public static final String	gradientBase	"gradientBase"
public static final String	gradientStop	"gradientStop"
public static final String	group	"g"
public static final String	height	"height"
public static final String	href	"href"
public static final String	id	"id"
public static final String	idList	"idList"
public static final String	lineEnding	"lineEnding"
public static final String	listOfColorDefinitions	"listOfColorDefinitions"
public static final String	listOfElements	"list-of-elements"
public static final String	listOfGradientDefinitions	"listOfGradientDefinitions"
public static final String	listOfGradientStops	"listOfGradientStops"
public static final String	listOfLineEndings	"listOfLineEndings"
public static final String	listOfLocalStyles	"listOfLocalStyles"
public static final String	listOfStyles	"listOfStyles"
public static final String	localRenderInformation	"localRenderInformation"
public static final int	MIN_SBML_LEVEL	3
public static final int	MIN_SBML_VERSION	1
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/render/version1"
public static final String	namespaceURI_L2	"http://projects.eml.org/bcb/sbml/render/level2"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/render/version1"
public static final String	offset	"offset"
public static final String	packageName	"Render"
public static final String	programName	"programName"
public static final String	programVersion	"programVersion"
public static final String	r	"r"
public static final String	referenceRenderInformation	"referenceRenderInformation"
public static final String	renderInformation	"renderInformation"
public static final String	renderPoint	"renderPoint"
public static final String	roleList	"roleList"
public static final String	rx	"rx"
public static final String	ry	"ry"
public static final String	shortLabel	"render"
public static final String	spreadMethod	"spreadMethod"
public static final String	startHead	"start-head"
public static final String	stopColor	"stop-color"
public static final String	stroke	"stroke"
public static final String	strokeDashArray	"stroke-dasharray"
public static final String	strokeWidth	"stroke-width"
public static final String	style	"style"
public static final String	textAnchor	"text-anchor"
public static final String	transform	"transform"
public static final String	typeList	"typeList"
public static final String	value	"value"
public static final String	versionMajor	"version-major"
public static final String	versionMinor	"version-minor"
public static final String	vTextAnchor	"vtext-anchor"
public static final String	width	"width"
public static final String	x	"x"
public static final String	x1	"x1"
public static final String	x2	"x2"
public static final String	y	"y"
public static final String	y1	"y1"
public static final String	y2	"y2"
public static final String	z	"z"
public static final String	z1	"z1"
public static final String	z2	"z2"

org.sbml.jsbml.ext.req.ReqConstants

Modifier and Type	Constant Field	Value
public static final String	changedBy	"changedBy"
public static final String	changedMath	"changedMath"
public static final String	listOfChangedMaths	"listOfChangedMaths"
public static final int	MIN_SBML_LEVEL	3
public static final int	MIN_SBML_VERSION	1
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/req/version1"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/req/version1"
public static final String	shortLabel	"req"
public static final String	viableWithoutChange	"viableWithoutChange"

org.sbml.jsbml.ext.spatial.SpatialConstants

Modifier and Type	Constant Field	Value
public static final String	adjacentDomains	"adjacentDomains"
public static final String	advectionCoefficient	"advectionCoefficient"
public static final String	analyticGeometry	"analyticGeometry"
public static final String	analyticVolume	"analyticVolume"
public static final String	arrayData	"arrayData"
public static final String	arrayDataLength	"arrayDataLength"
public static final String	boundaryCondition	"boundaryCondition"
public static final String	boundaryDomainType	"boundaryDomainType"
public static final String	boundaryMaximum	"boundaryMax"
public static final String	boundaryMinimum	"boundaryMin"
public static final String	compartment	"compartment"
public static final String	compartmentMapping	"compartmentMapping"
public static final String	complementA	"complementA"
public static final String	complementB	"complementB"
public static final String	components	"components"
public static final String	componentsLength	"componentsLength"
public static final String	componentType	"componentType"
public static final String	compression	"compression"
public static final String	coord1	"coord1"
public static final String	coord2	"coord2"
public static final String	coord3	"coord3"
public static final String	coordinate	"coordinate"
public static final String	coordinateBoundary	"coordinateBoundary"
public static final String	coordinateComponent	"coordinateComponent"
public static final String	coordinateReference1	"coordinateReference1"
public static final String	coordinateReference2	"coordinateReference2"
public static final String	coordinateSystem	"coordinateSystem"
public static final String	csGeometry	"csGeometry"
public static final String	csgHomogeneousTransformation	"csgHomogeneousTransformation"
public static final String	csgNode	"csgNode"
public static final String	csgPrimitive	"csgPrimitive"
public static final String	csgPseudoPrimitive	"csgPseudoPrimitive"
public static final String	csgRotation	"csgRotation"
public static final String	csgScale	"csgScale"
public static final String	csgSetOperator	"csgSetOperator"
public static final String	csgTransformation	"csgTransformation"
public static final String	csgTranslation	"csgTranslation"
public static final String	data	"data"
public static final String	dataType	"dataType"
public static final String	diffusionCoefficient	"diffusionCoefficient"
public static final String	diffusionKind	"diffusionKind"
public static final String	domain	"domain"
public static final String	domain1	"domain1"
public static final String	domain2	"domain2"
public static final String	domainType	"domainType"
public static final String	encoding	"encoding"
public static final String	forwardTransformation	"forwardTransformation"
public static final String	functionType	"functionType"
public static final String	geometry	"geometry"
public static final String	geometryDefinition	"geometryDefinition"
public static final String	imageData	"imageData"
public static final String	index	"index"
public static final String	interiorPoint	"interiorPoint"
public static final String	interpolation	"interpolation"
public static final String	isActive	"isActive"
public static final String	isLocal	"isLocal"
public static final String	isSpatial	"isSpatial"
public static final String	listOfAdjacentDomains	"listOfAdjacentDomains"
public static final String	listOfAnalyticVolumes	"listOfAnalyticVolumes"
public static final String	listOfCoordinateComponents	"listOfCoordinateComponents"
public static final String	listOfCSGNodes	"listOfCSGNodes"
public static final String	listOfCSGObjects	"listOfCSGObjects"
public static final String	listOfDomains	"listOfDomains"
public static final String	listOfDomainTypes	"listOfDomainTypes"
public static final String	listOfGeometryDefinitions	"listOfGeometryDefinitions"
public static final String	listOfInteriorPoints	"listOfInteriorPoints"
public static final String	listOfParametricObjects	"listOfParametricObjects"
public static final String	listOfSampledVolumes	"listOfSampledVolumes"
public static final String	listOfSpatialPoints	"listOfSpatialPoints"
public static final String	maxValue	"maxValue"
public static final String	minValue	"minValue"
public static final String	namespaceURI	"http://www.sbml.org/sbml/level3/version1/spatial/version1"
public static final String	namespaceURI_L3V1V1	"http://www.sbml.org/sbml/level3/version1/spatial/version1"
public static final String	numSamples1	"numSamples1"
public static final String	numSamples2	"numSamples2"
public static final String	numSamples3	"numSamples3"
public static final String	operationType	"operationType"
public static final String	ordinal	"ordinal"
public static final String	packageName	"Spatial"
public static final String	parametricGeometry	"parametricGeometry"
public static final String	parametricObject	"parametricObject"
public static final String	pointIndex	"pointIndex"
public static final String	pointIndexLength	"pointIndexLength"
public static final String	polygonObject	"polygonObject"
public static final String	polygonType	"polygonType"
public static final String	primitiveType	"csgObjectRef"
public static final String	reverseTransformation	"reverseTransformation"
public static final String	rotateAngleInRadians	"rotateAngleInRadians"
public static final String	rotateAxisX	"rotateAxisX"
public static final String	rotateAxisY	"rotateAxisY"
public static final String	rotateAxisZ	"rotateAxisZ"
public static final String	sampledField	"sampledField"
public static final String	sampledFieldGeometry	"sampledFieldGeometry"
public static final String	sampledValue	"sampledValue"
public static final String	sampledVolume	"sampledVolume"
public static final String	samples	"samples"
public static final String	samplesLength	"samplesLength"
public static final String	scaleX	"scaleX"
public static final String	scaleY	"scaleY"
public static final String	scaleZ	"scaleZ"
public static final String	shortLabel	"spatial"
public static final String	spatialDimensions	"spatialDimensions"
public static final String	spatialId	"id"
public static final String	spatialPoints	"spatialPoints"
public static final String	spatialRef	"spatialRef"
public static final String	spatialSymbolReference	"spatialSymbolReference"
public static final String	transformationComponent	"transformationComponent"
public static final String	translateX	"translateX"
public static final String	translateY	"translateY"
public static final String	translateZ	"translateZ"
public static final String	type	"type"
public static final String	unit	"unit"
public static final String	unitSize	"unitSize"
public static final String	value	"value"
public static final String	variable	"variable"

org.sbml.jsbml.math.compiler.HTMLFormula

Modifier and Type	Constant Field	Value
public static final String	C_DOT	"⋅"
public static final String	EMPTY_SET	"∅"
public static final String	REVERSIBLE_REACTION_ARROW	"⇌"
public static final String	RIGHT_ARROW	"→"

org.sbml.jsbml.math.compiler.LaTeXCompiler

Modifier and Type	Constant Field	Value
public static final String	CONSTANT_PI	"\\pi"
public static final String	leftBrace	"\\left("
public static final String	leftQuotationMark	"``"
public static final String	NEGATIVE_ININITY	"-\\infty"
public static final String	or	"\\lor "
public static final String	POSITIVE_INFINITY	"\\infty"
public static final String	rightBrace	"\\right)"
public static final String	rightQuotationMark	"\""
public static final String	wedge	"\\wedge "
public static final String	xor	"\\oplus "

org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants

Modifier and Type	Constant Field	Value
public static final int	AND	22
public static final int	BOOLEAN_LOGIC	21
public static final int	CLOSE_PAR	15
public static final int	COMPARISON	20
public static final int	DEFAULT	0
public static final int	DIGIT	4
public static final int	DIVIDE	12
public static final int	EOF	0
public static final int	EOL	30
public static final int	EXPNUMBER	6
public static final int	FACTORIAL	13
public static final int	IDCHAR	28
public static final int	INTEGER	3
public static final int	LEFT_BRACES	16
public static final int	LEFT_BRACKET	18
public static final int	LETTER	29
public static final int	LOG	26
public static final int	MINUS	10
public static final int	NOT	25
public static final int	NUMBER	5
public static final int	OPEN_PAR	14
public static final int	OR	23
public static final int	PLUS	8
public static final int	POWER	9
public static final int	RIGHT_BRACES	17
public static final int	RIGHT_BRACKET	19
public static final int	SLPITTER	7
public static final int	STRING	27
public static final int	TIMES	11
public static final int	XOR	24

org.sbml.jsbml.math.parser.FormulaParserConstants

Modifier and Type	Constant Field	Value
public static final int	AND	22
public static final int	BOOLEAN_LOGIC	21
public static final int	CLOSE_PAR	15
public static final int	COMPARISON	20
public static final int	DEFAULT	0
public static final int	DIGIT	4
public static final int	DIVIDE	12
public static final int	EOF	0
public static final int	EOL	30
public static final int	EXPNUMBER	6
public static final int	FACTORIAL	13
public static final int	IDCHAR	28
public static final int	INTEGER	3
public static final int	LEFT_BRACES	16
public static final int	LEFT_BRACKET	18
public static final int	LETTER	29
public static final int	LOG	26
public static final int	MINUS	10
public static final int	NOT	25
public static final int	NUMBER	5
public static final int	OPEN_PAR	14
public static final int	OR	23
public static final int	PLUS	8
public static final int	POWER	9
public static final int	RIGHT_BRACES	17
public static final int	RIGHT_BRACKET	19
public static final int	SLPITTER	7
public static final int	STRING	27
public static final int	TIMES	11
public static final int	XOR	24

org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants

Modifier and Type	Constant Field	Value
public static final int	AND	22
public static final int	BOOLEAN_LOGIC	21
public static final int	CLOSE_PAR	15
public static final int	COMPARISON	20
public static final int	DEFAULT	0
public static final int	DIGIT	4
public static final int	DIVIDE	12
public static final int	EOF	0
public static final int	EOL	30
public static final int	EXPNUMBER	6
public static final int	IDCHAR	28
public static final int	INTEGER	3
public static final int	LEFT_BRACES	16
public static final int	LEFT_BRACKET	18
public static final int	LETTER	29
public static final int	LOG	26
public static final int	MINUS	10
public static final int	MODULO	13
public static final int	NOT	25
public static final int	NUMBER	5
public static final int	OPEN_PAR	14
public static final int	OR	23
public static final int	PLUS	8
public static final int	POWER	9
public static final int	RIGHT_BRACES	17
public static final int	RIGHT_BRACKET	19
public static final int	SLPITTER	7
public static final int	STRING	27
public static final int	TIMES	11
public static final int	XOR	24

org.sbml.jsbml.math.parser.FormulaParserLL3Constants

Modifier and Type	Constant Field	Value
public static final int	AND	22
public static final int	BOOLEAN_LOGIC	21
public static final int	CLOSE_PAR	15
public static final int	COMPARISON	20
public static final int	DEFAULT	0
public static final int	DIGIT	4
public static final int	DIVIDE	12
public static final int	EOF	0
public static final int	EOL	30
public static final int	EXPNUMBER	6
public static final int	IDCHAR	28
public static final int	INTEGER	3
public static final int	LEFT_BRACES	16
public static final int	LEFT_BRACKET	18
public static final int	LETTER	29
public static final int	LOG	26
public static final int	MINUS	10
public static final int	MODULO	13
public static final int	NOT	25
public static final int	NUMBER	5
public static final int	OPEN_PAR	14
public static final int	OR	23
public static final int	PLUS	8
public static final int	POWER	9
public static final int	RIGHT_BRACES	17
public static final int	RIGHT_BRACKET	19
public static final int	SPLITTER	7
public static final int	STRING	27
public static final int	TIMES	11
public static final int	XOR	24

org.sbml.jsbml.math.parser.SimpleCharStream

Modifier and Type	Constant Field	Value
public static final boolean	staticFlag	false

org.sbml.jsbml.text.parser.CobraFormulaParserConstants

Modifier and Type	Constant Field	Value
public static final int	AND	19
public static final int	BOOLEAN_LOGIC	18
public static final int	CLOSE_PAR	12
public static final int	COMPARISON	17
public static final int	DEFAULT	0
public static final int	DIGIT	3
public static final int	DIVIDE	9
public static final int	EOF	0
public static final int	EOL	27
public static final int	IDCHAR	25
public static final int	LEFT_BRACES	13
public static final int	LEFT_BRACKET	15
public static final int	LETTER	26
public static final int	LOG	23
public static final int	MINUS	7
public static final int	MODULO	10
public static final int	NOT	22
public static final int	OPEN_PAR	11
public static final int	OR	20
public static final int	PLUS	5
public static final int	POWER	6
public static final int	RIGHT_BRACES	14
public static final int	RIGHT_BRACKET	16
public static final int	SPLITTER	4
public static final int	STRING	24
public static final int	TIMES	8
public static final int	XOR	21

org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants

Modifier and Type	Constant Field	Value
public static final int	ABS	13
public static final int	AND	23
public static final int	BOOLEAN_LOGIC	22
public static final int	CLOSE_PAR	16
public static final int	COMPARISON	21
public static final int	DEFAULT	0
public static final int	DIGIT	4
public static final int	DIVIDE	12
public static final int	EOF	0
public static final int	EOL	31
public static final int	EXPNUMBER	6
public static final int	FACTORIAL	14
public static final int	IDCHAR	29
public static final int	INTEGER	3
public static final int	LEFT_BRACES	17
public static final int	LEFT_BRACKET	19
public static final int	LETTER	30
public static final int	LOG	27
public static final int	MINUS	10
public static final int	NOT	26
public static final int	NUMBER	5
public static final int	OPEN_PAR	15
public static final int	OR	24
public static final int	PLUS	8
public static final int	POWER	9
public static final int	RIGHT_BRACES	18
public static final int	RIGHT_BRACKET	20
public static final int	SLPITTER	7
public static final int	STRING	28
public static final int	TIMES	11
public static final int	XOR	25

org.sbml.jsbml.text.parser.FormulaParserConstants

Modifier and Type	Constant Field	Value
public static final int	AND	23
public static final int	BOOLEAN_LOGIC	22
public static final int	CLOSE_PAR	16
public static final int	COMPARISON	21
public static final int	DEFAULT	0
public static final int	DIGIT	4
public static final int	DIVIDE	12
public static final int	EOF	0
public static final int	EOL	31
public static final int	EXPNUMBER	6
public static final int	FACTORIAL	14
public static final int	IDCHAR	29
public static final int	INTEGER	3
public static final int	LEFT_BRACES	17
public static final int	LEFT_BRACKET	19
public static final int	LETTER	30
public static final int	LOG	27
public static final int	MINUS	10
public static final int	MODULO	13
public static final int	NOT	26
public static final int	NUMBER	5
public static final int	OPEN_PAR	15
public static final int	OR	24
public static final int	PLUS	8
public static final int	POWER	9
public static final int	RIGHT_BRACES	18
public static final int	RIGHT_BRACKET	20
public static final int	SLPITTER	7
public static final int	STRING	28
public static final int	TIMES	11
public static final int	XOR	25

org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants

Modifier and Type	Constant Field	Value
public static final int	AND	22
public static final int	BOOLEAN_LOGIC	21
public static final int	CLOSE_PAR	15
public static final int	COMPARISON	20
public static final int	DEFAULT	0
public static final int	DIGIT	4
public static final int	DIVIDE	12
public static final int	EOF	0
public static final int	EOL	30
public static final int	EXPNUMBER	6
public static final int	IDCHAR	28
public static final int	INTEGER	3
public static final int	LEFT_BRACES	16
public static final int	LEFT_BRACKET	18
public static final int	LETTER	29
public static final int	LOG	26
public static final int	MINUS	10
public static final int	MODULO	13
public static final int	NOT	25
public static final int	NUMBER	5
public static final int	OPEN_PAR	14
public static final int	OR	23
public static final int	PLUS	8
public static final int	POWER	9
public static final int	RIGHT_BRACES	17
public static final int	RIGHT_BRACKET	19
public static final int	SLPITTER	7
public static final int	STRING	27
public static final int	TIMES	11
public static final int	XOR	24

org.sbml.jsbml.text.parser.FormulaParserLL3Constants

Modifier and Type	Constant Field	Value
public static final int	AND	22
public static final int	BOOLEAN_LOGIC	21
public static final int	CLOSE_PAR	15
public static final int	COMPARISON	20
public static final int	DEFAULT	0
public static final int	DIGIT	4
public static final int	DIVIDE	12
public static final int	EOF	0
public static final int	EOL	30
public static final int	EXPNUMBER	6
public static final int	IDCHAR	28
public static final int	INTEGER	3
public static final int	LEFT_BRACES	16
public static final int	LEFT_BRACKET	18
public static final int	LETTER	29
public static final int	LOG	26
public static final int	MINUS	10
public static final int	MODULO	13
public static final int	NOT	25
public static final int	NUMBER	5
public static final int	OPEN_PAR	14
public static final int	OR	23
public static final int	PLUS	8
public static final int	POWER	9
public static final int	RIGHT_BRACES	17
public static final int	RIGHT_BRACKET	19
public static final int	SPLITTER	7
public static final int	STRING	27
public static final int	TIMES	11
public static final int	XOR	24

org.sbml.jsbml.text.parser.SimpleCharStream

Modifier and Type	Constant Field	Value
public static final boolean	staticFlag	false

org.sbml.jsbml.util.Maths

Modifier and Type	Constant Field	Value
public static final double	AVOGADRO_L3V1	6.02214179E23
public static final double	R	8.314472

org.sbml.jsbml.util.StringTools

Modifier and Type	Constant Field	Value
public static final String	DECIMAL_FORMAT	"#.###########################################"
public static final String	REAL_FORMAT	"#.###############################################"
public static final String	SCIENTIFIC_FORMAT	"#.###########################################E0"

org.sbml.jsbml.util.TreeNodeChangeEvent

Modifier and Type	Constant Field	Value
public static final String	about	"about"
public static final String	addCVTerm	"addCVTerm"
public static final String	addDeclaredNamespace	"addDeclaredNamespace"
public static final String	addExtension	"addExtension"
public static final String	annotation	"annotation"
public static final String	annotationNameSpaces	"annotationNameSpaces"
public static final String	areaUnits	"areaUnits"
public static final String	base	"base"
public static final String	baseListType	"baseListType"
public static final String	boundaryCondition	"boundaryCondition"
public static final String	charge	"charge"
public static final String	childNode	"childNode"
public static final String	className	"className"
public static final String	compartment	"compartment"
public static final String	compartmentType	"compartmentType"
public static final String	constant	"constant"
public static final String	conversionFactor	"conversionFactor"
public static final String	createdDate	"createdDate"
public static final String	creator	"creator"
public static final String	definitionURL	"definitionURL"
public static final String	denominator	"denominator"
public static final String	email	"email"
public static final String	encoding	"encoding"
public static final String	exponent	"exponent"
public static final String	extension	"sbasePlugin"
public static final String	extentUnits	"extentUnits"
public static final String	familyName	"familyName"
public static final String	fast	"fast"
public static final String	formula	"formula"
public static final String	givenName	"givenName"
public static final String	hasOnlySubstanceUnits	"hasOnlySubstanceUnits"
public static final String	history	"history"
public static final String	id	"id"
public static final String	initialAmount	"initialAmount"
public static final String	initialValue	"initialValue"
public static final String	isEOF	"isEOF"
public static final String	isExplicitlySetConstant	"isExplicitlySetConstant"
public static final String	isSetNumberType	"isSetNumberType"
public static final String	kind	"kind"
public static final String	kineticLaw	"kineticLaw"
public static final String	lengthUnits	"lengthUnits"
public static final String	level	"level"
public static final String	listOfUnits	"listOfUnits"
public static final String	mantissa	"mantissa"
public static final String	math	"math"
public static final String	mathMLClass	"class"
public static final String	message	"message"
public static final String	metaId	"metaId"
public static final String	model	"model"
public static final String	modifiedDate	"modifiedDate"
public static final String	multiplier	"multiplier"
public static final String	name	"name"
public static final String	namespace	"namespace"
public static final String	nonRDFAnnotation	"nonRDFAnnotation"
public static final String	notes	"notes"
public static final String	number	"number"
public static final String	numBvars	"numBvars"
public static final String	numerator	"numerator"
public static final String	offset	"offset"
public static final String	organization	"organization"
public static final String	outside	"outside"
public static final String	packageName	"packageName"
public static final String	packageVersion	"packageVersion"
public static final String	parentSBMLObject	"parentSBMLObject"
public static final String	persistent	"persistent"
public static final String	priority	"priority"
public static final String	qualifier	"qualifier"
public static final String	refId	"refId"
public static final String	removeCVTerm	"removeCVTerm"
public static final String	reversible	"reversible"
public static final String	SBMLDocumentAttributes	"SBMLDocumentAttributes"
public static final String	sboTerm	"sboTerm"
public static final String	scale	"scale"
public static final String	setAnnotation	"setAnnotation"
public static final String	size	"size"
public static final String	spatialDimensions	"spatialDimensions"
public static final String	spatialSizeUnits	"spatialSizeUnits"
public static final String	species	"species"
public static final String	speciesType	"speciesType"
public static final String	stoichiometry	"stoichiometry"
public static final String	style	"style"
public static final String	substanceUnits	"substanceUnits"
public static final String	symbol	"symbol"
public static final String	text	"text"
public static final String	timeUnits	"timeUnits"
public static final String	type	"type"
public static final String	units	"units"
public static final String	unsetCVTerms	"unsetCVTerms"
public static final String	userObject	"userObject"
public static final String	useValuesFromTriggerTime	"useValuesFromTriggerTime"
public static final String	value	"value"
public static final String	variable	"variable"
public static final String	version	"version"
public static final String	volume	"volume"
public static final String	volumeUnits	"volumeUnits"
public static final String	xmlTriple	"xmlTriple"

org.sbml.jsbml.util.XMLResourceBundleControl

Modifier and Type	Constant Field	Value
public static final String	XML	"xml"

org.sbml.jsbml.util.compilers.FormulaCompiler

Modifier and Type	Constant Field	Value
public static final String	FORMULA_ARGUMENT_SEPARATOR	""

org.sbml.jsbml.util.compilers.HTMLFormula

Modifier and Type	Constant Field	Value
public static final String	C_DOT	"⋅"
public static final String	EMPTY_SET	"∅"
public static final String	REVERSIBLE_REACTION_ARROW	"⇌"
public static final String	RIGHT_ARROW	"→"

org.sbml.jsbml.util.compilers.LaTeXCompiler

Modifier and Type	Constant Field	Value
public static final String	CONSTANT_PI	"\\pi"
public static final String	leftBrace	"\\left("
public static final String	leftQuotationMark	"``"
public static final String	NEGATIVE_ININITY	"-\\infty"
public static final String	or	"\\lor "
public static final String	POSITIVE_INFINITY	"\\infty"
public static final String	rightBrace	"\\right)"
public static final String	rightQuotationMark	"\""
public static final String	wedge	"\\wedge "
public static final String	xor	"\\oplus "

org.sbml.jsbml.xml.parsers.SBMLRDFAnnotationParser

Modifier and Type	Constant Field	Value
public static final String	CUSTOM_RDF	"jsbml.custom.rdf"
public static final String	RDF_NODE_COLOR	"jsbml.rdf.node.color"

org.sbml.jsbml.xml.parsers.SpatialParser

Modifier and Type	Constant Field	Value
public static final String	namespaceURIrequired	"http://www.sbml.org/sbml/level3/version1/req/version1"