org.sbml.jsbml.ext.fbc.converters

Class FbcV2ToCobraConverter

java.lang.Object

org.sbml.jsbml.ext.fbc.converters.FbcV2ToCobraConverter

All Implemented Interfaces:

SBMLConverter

public class FbcV2ToCobraConverter
extends java.lang.Object
implements SBMLConverter

Converts SBML FBC Version 2 files to old COBRA SBML files.

Since:

1.3

Author:

Thomas Hamm, Nicolas Rodriguez, Thorsten Tiede

Constructor Summary

Constructors

Constructor and Description
FbcV2ToCobraConverter()

Method Summary

Modifier and Type	Method and Description
SBMLDocument	convert(SBMLDocument sbmlDocument) Converts a given SBMLDocument.
void	setOption(java.lang.String name, java.lang.String value) Sets options

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FbcV2ToCobraConverter

public FbcV2ToCobraConverter()

Method Detail

convert

public SBMLDocument convert(SBMLDocument sbmlDocument)
                     throws SBMLException

Description copied from interface: SBMLConverter

Converts a given SBMLDocument.

Specified by:

convert in interface SBMLConverter

Parameters:

sbmlDocument - the document that need to be converted, it should not be modified

Returns:

the converted SBMLDocument

Throws:

SBMLException - if a problem occurred during conversion

setOption

public void setOption(java.lang.String name,
                      java.lang.String value)

Description copied from interface: SBMLConverter

Sets options

Specified by:

setOption in interface SBMLConverter