R-Index (JSBML 1.6.1-SNAPSHOT API Specification)

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

R

r - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
R - Static variable in class org.sbml.jsbml.util.Maths: Universal gas constant of 8.314472 J ⋅ mol^-1 ⋅ K^-1 according to D.
radialGradient - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
RadialGradient - Class in org.sbml.jsbml.ext.render
RadialGradient() - Constructor for class org.sbml.jsbml.ext.render.RadialGradient: Creates an RadialGradient instance
RadialGradient(RadialGradient) - Constructor for class org.sbml.jsbml.ext.render.RadialGradient: Clone constructor
radialGradient_cx - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
radialGradient_cy - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
radialGradient_cz - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
radialGradient_fx - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
radialGradient_fy - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
radialGradient_fz - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
radialGradient_r - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: For DefaultValues
RadialGradientConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the RadialGradient class.
RadialGradientConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RadialGradientConstraints
RADIAN - org.sbml.jsbml.Unit.Kind: The radian unit.
raiseByThePowerOf(double) - Method in class org.sbml.jsbml.ASTNode: Raises this ASTNode by the power of the given number.
raiseByThePowerOf(double) - Method in class org.sbml.jsbml.UnitDefinition: Raises this unit definition by the power of the given exponent, i.e., the exponents of every unit contained by this unit definition are multiplied with the given exponent.
raiseByThePowerOf(ASTNode) - Method in class org.sbml.jsbml.ASTNode: Raises this ASTNode by the power of the value of the given node.
raiseByThePowerOf(CallableSBase) - Method in class org.sbml.jsbml.ASTNode: Raises this ASTNode by the power of the value of this named SBase object.
range - org.sbml.jsbml.ext.distrib.UncertParameter.Type: The range is the interval [a, b] so that a < b and contains all possible values of x.
rank - Static variable in class org.sbml.jsbml.ext.qual.QualConstants
RateRule - Class in org.sbml.jsbml: Represents the rateRule XML element of a SBML file.
RateRule() - Constructor for class org.sbml.jsbml.RateRule: Creates a RateRule instance.
RateRule(int, int) - Constructor for class org.sbml.jsbml.RateRule: Creates a RateRule instance from a given RateRule.
RateRule(ASTNode, int, int) - Constructor for class org.sbml.jsbml.RateRule: Creates a new RateRule instance.
RateRule(ASTNode, Parameter) - Constructor for class org.sbml.jsbml.RateRule: Creates a new RateRule instance.
RateRule(ASTNode, Variable) - Constructor for class org.sbml.jsbml.RateRule: Creates a new RateRule instance.
RateRule(ExplicitRule) - Constructor for class org.sbml.jsbml.RateRule: Creates a RateRule instance cloned from the given ExplicitRule
RateRule(Parameter) - Constructor for class org.sbml.jsbml.RateRule: Creates a new RateRule instance.
RateRule(Parameter, ASTNode) - Constructor for class org.sbml.jsbml.RateRule: Creates a new RateRule instance.
RateRule(RateRule) - Constructor for class org.sbml.jsbml.RateRule: Creates a new RateRule instance cloned from the given RateRule.
RateRule(Variable) - Constructor for class org.sbml.jsbml.RateRule: Creates a RateRule instance from a given Symbol.
RateRule(Variable, ASTNode) - Constructor for class org.sbml.jsbml.RateRule: Creates a RateRule instance from a given Symbol and ASTNode.
RateRuleCompartmentMismatch - org.sbml.jsbml.SBMLException.Code: Mismatched units in rate rule for compartment
RateRuleConstraints - Class in org.sbml.jsbml.validator.offline.constraints
RateRuleConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RateRuleConstraints
RateRuleForConstantEntity - org.sbml.jsbml.SBMLException.Code: Cannot reassign a constant in a rate rule
RateRuleParameterMismatch - org.sbml.jsbml.SBMLException.Code: Mismatched units in rate rule for parameter
RateRuleSpeciesMismatch - org.sbml.jsbml.SBMLException.Code: Mismatched units in rate rule for species
ratio - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: The rx/ry-ratio of an ellipse
RATIONAL - org.sbml.jsbml.ASTNode.Type: An ASTNode of this ASTNode.Type contains two integer values: a numerator and a denominator.
RDF_NODE_COLOR - Static variable in class org.sbml.jsbml.xml.parsers.SBMLRDFAnnotationParser: A Constant String that is used to store a XMLNode color in the user objects map.
reactant - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
reactantComponent - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
reactantSpeciesFeature - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
reaction - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
reaction - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
Reaction - Class in org.sbml.jsbml: Represents the reaction XML element of a SBML file.
Reaction() - Constructor for class org.sbml.jsbml.Reaction: Creates a Reaction instance.
Reaction(int, int) - Constructor for class org.sbml.jsbml.Reaction: Creates a new Reaction instance from a given SBML level and version.
Reaction(String) - Constructor for class org.sbml.jsbml.Reaction
Reaction(String, int, int) - Constructor for class org.sbml.jsbml.Reaction: Creates a Reaction instance from an id, level and version.
Reaction(Reaction) - Constructor for class org.sbml.jsbml.Reaction: Creates a Reaction instance from a given reaction.
REACTION_ELEMENTS_ORDER - Static variable in class org.sbml.jsbml.validator.offline.constraints.ReactionConstraints
ReactionConstraints - Class in org.sbml.jsbml.validator.offline.constraints
ReactionConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.ReactionConstraints
reactionEquation(Reaction) - Method in class org.sbml.jsbml.math.compiler.HTMLFormula
reactionEquation(Reaction) - Method in class org.sbml.jsbml.util.compilers.HTMLFormula
reactionGlyph - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
ReactionGlyph - Class in org.sbml.jsbml.ext.layout: Analogous to how a Reaction object has to at least have one reactant or product, the ReactionGlyph has to at least have one SpeciesReferenceGlyph stored in the ReactionGlyph.listOfSpeciesReferenceGlyphs.
ReactionGlyph() - Constructor for class org.sbml.jsbml.ext.layout.ReactionGlyph
ReactionGlyph(int, int) - Constructor for class org.sbml.jsbml.ext.layout.ReactionGlyph
ReactionGlyph(String) - Constructor for class org.sbml.jsbml.ext.layout.ReactionGlyph
ReactionGlyph(String, int, int) - Constructor for class org.sbml.jsbml.ext.layout.ReactionGlyph
ReactionGlyph(ReactionGlyph) - Constructor for class org.sbml.jsbml.ext.layout.ReactionGlyph
REACTIONGLYPH - org.sbml.jsbml.ext.render.Style.Type
ReactionGlyphConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the ReactionGlyph class.
ReactionGlyphConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.ReactionGlyphConstraints
read(File) - Static method in class org.sbml.jsbml.SBMLReader: Factory method for reading SBML from a given File.
read(File, TreeNodeChangeListener) - Static method in class org.sbml.jsbml.SBMLReader: Factory method for reading SBML from a given File.
read(InputStream) - Static method in class org.sbml.jsbml.SBMLReader: Factory method for reading SBML from a given InputStream.
read(String) - Static method in class org.sbml.jsbml.SBMLReader: Factory method for reading SBML from given XML code in its String representation.
readAttribute(String, String, String) - Method in class org.sbml.jsbml.AbstractMathContainer
readAttribute(String, String, String) - Method in class org.sbml.jsbml.AbstractSBase
readAttribute(String, String, String) - Method in class org.sbml.jsbml.Annotation: Sets the about instance of this object if the attributeName is equal to 'about'.
readAttribute(String, String, String) - Method in class org.sbml.jsbml.Compartment
readAttribute(String, String, String) - Method in class org.sbml.jsbml.Event
readAttribute(String, String, String) - Method in class org.sbml.jsbml.EventAssignment
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ExplicitRule
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.arrays.Dimension
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.arrays.Index
readAttribute(String, String, String) - Method in interface org.sbml.jsbml.ext.ASTNodePlugin: Reads and sets the attribute if it is know from this SBasePlugin.
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.comp.CompSBasePlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.comp.ExternalModelDefinition
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.comp.ReplacedBy
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.comp.ReplacedElement
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.comp.SBaseRef
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.comp.Submodel
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.distrib.DistribSBasePlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.distrib.UncertParameter
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.distrib.UncertSpan
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.dyn.DynElement
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.dyn.DynEventPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.dyn.DynSBasePlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.dyn.SpatialComponent
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.FBCReactionPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.FluxBound: Deprecated.
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.GeneProduct
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.GeneProductRef
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.fbc.Objective
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.groups.Group
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.groups.GroupsModelPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.groups.ListOfMemberConstraint: Deprecated.
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.groups.Member
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.groups.MemberConstraint: Deprecated.
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.CompartmentGlyph
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.CurveSegment
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.Dimensions
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.GraphicalObject
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.Layout
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.LayoutModelPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.Point
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.ReactionGlyph
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.ReferenceGlyph
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.SpeciesGlyph
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.layout.TextGlyph
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.CompartmentReference
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.InSpeciesTypeBond
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.MultiASTNodePlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.MultiModelPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.MultiSimpleSpeciesReferencePlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.OutwardBindingSite
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.PossibleSpeciesFeatureValue
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureType
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureValue
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentIndex
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentMapInProduct
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeInstance
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.multi.SubListOfSpeciesFeature
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.qual.FunctionTerm
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.qual.Input
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.qual.Output
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.qual.QualModelPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.AbstractRenderPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.ColorDefinition
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.DefaultValues
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.Ellipse
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.GlobalRenderInformation
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.GradientBase
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.GradientStop
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive1D
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive2D
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.Image
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.LinearGradient
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.LineEnding
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.ListOfRenderInformation
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.LocalRenderInformation
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.LocalStyle
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.RadialGradient
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.Rectangle
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.RenderCurve
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.RenderCurveSegment
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.RenderGraphicalObjectPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.RenderGroup
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.RenderInformationBase
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.RenderPoint
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.Style
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.Text
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.render.Transformation
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.req.ChangedMath
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.req.ReqSBasePlugin
readAttribute(String, String, String) - Method in interface org.sbml.jsbml.ext.SBasePlugin: Reads and sets the attribute if it is know from this SBasePlugin.
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.AbstractSpatialSBasePlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.AdjacentDomains
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.AdvectionCoefficient
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.AnalyticVolume
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.Boundary
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.BoundaryCondition
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.CompartmentMapping
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.CoordinateReference: Deprecated.
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.CSGObject
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.CSGPrimitive
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.CSGPseudoPrimitive
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.CSGRotation
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.CSGScale
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.CSGTranslation
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.DiffusionCoefficient
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.Domain
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.DomainType
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.Geometry
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.GeometryDefinition
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.InteriorPoint
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.OrdinalMapping
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.ParameterType
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.ParametricObject
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.PolygonObject: Deprecated.
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.SampledField
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.SampledFieldGeometry
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.SampledVolume
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.SpatialReactionPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.SpatialSpeciesPlugin
readAttribute(String, String, String) - Method in class org.sbml.jsbml.ext.spatial.TransformationComponent
readAttribute(String, String, String) - Method in class org.sbml.jsbml.InitialAssignment
readAttribute(String, String, String) - Method in class org.sbml.jsbml.KineticLaw
readAttribute(String, String, String) - Method in class org.sbml.jsbml.LocalParameter
readAttribute(String, String, String) - Method in class org.sbml.jsbml.Model
readAttribute(String, String, String) - Method in class org.sbml.jsbml.Parameter
readAttribute(String, String, String) - Method in class org.sbml.jsbml.Reaction
readAttribute(String, String, String) - Method in interface org.sbml.jsbml.SBase: Sets the given attribute in this SBase.
readAttribute(String, String, String) - Method in class org.sbml.jsbml.SBMLDocument
readAttribute(String, String, String) - Method in class org.sbml.jsbml.SimpleSpeciesReference
readAttribute(String, String, String) - Method in class org.sbml.jsbml.Species
readAttribute(String, String, String) - Method in class org.sbml.jsbml.SpeciesReference
readAttribute(String, String, String) - Method in class org.sbml.jsbml.Trigger
readAttribute(String, String, String) - Method in class org.sbml.jsbml.Unit
readAttribute(String, String, String, String) - Method in class org.sbml.jsbml.Creator: Returns true if the XML attribute is known by this Creator.
readAttribute(String, String, String, String) - Method in class org.sbml.jsbml.CVTerm
readAttribute(String, String, String, String) - Method in class org.sbml.jsbml.History
readChar() - Method in class org.sbml.jsbml.math.parser.SimpleCharStream: Read a character.
readChar() - Method in class org.sbml.jsbml.text.parser.SimpleCharStream: Read a character.
READING_IN_PROGRESS - Static variable in class org.sbml.jsbml.JSBML: Key used to indicate that we are in the process of reading an XML document.
ReadingParser - Interface in org.sbml.jsbml.xml.parsers: The interface to implement for the SBML parsers reading SBML files.
readingParsers - Variable in class org.sbml.jsbml.xml.parsers.ParserManager
readMathML(String) - Method in class org.sbml.jsbml.xml.stax.SBMLReader
readMathML(String, TreeNodeChangeListener) - Method in class org.sbml.jsbml.xml.stax.SBMLReader: Reads a mathML String into an ASTNode.
readMathML(String, TreeNodeChangeListener, MathContainer) - Method in class org.sbml.jsbml.xml.stax.SBMLReader: Reads a mathML String into an ASTNode.
readMathMLFromString(String) - Static method in class org.sbml.jsbml.ASTNode: Reads the MathML from the given XML string.
readMathMLFromString(String) - Static method in class org.sbml.jsbml.JSBML: Reads the MathML from the given XML string, constructs a corresponding abstract syntax tree, and returns a pointer to the root of the tree.
readNotes(String) - Method in class org.sbml.jsbml.xml.stax.SBMLReader
readNotes(String, TreeNodeChangeListener) - Method in class org.sbml.jsbml.xml.stax.SBMLReader: Reads a notes XML String into an XMLNode.
readProperties(String) - Static method in class org.sbml.jsbml.resources.Resource
readSBML(File) - Method in class org.sbml.jsbml.SBMLReader: Reads an SBML document from a File.
readSBML(File) - Method in class org.sbml.jsbml.xml.stax.SBMLReader
readSBML(File, TreeNodeChangeListener) - Method in class org.sbml.jsbml.SBMLReader
readSBML(File, TreeNodeChangeListener) - Method in class org.sbml.jsbml.xml.stax.SBMLReader: Reads a SBML String from the given file.
readSBML(String) - Static method in class org.sbml.jsbml.JSBML: Reads an SBML document from the given file.
readSBML(String) - Method in class org.sbml.jsbml.SBMLReader: Reads an SBML document from a file.
readSBML(String) - Method in class org.sbml.jsbml.xml.stax.SBMLReader: Reads SBML from a given file.
readSBML(XMLEventReader) - Method in class org.sbml.jsbml.xml.stax.SBMLReader
readSBML(XMLEventReader, TreeNodeChangeListener) - Method in class org.sbml.jsbml.xml.stax.SBMLReader: Reads an SBMLDocument from the given XMLEventReader
readSBMLFile(String) - Method in class org.sbml.jsbml.xml.stax.SBMLReader: Reads the SBML file 'fileName' and creates/initialises a SBMLDocument instance.
readSBMLFromFile(String) - Static method in class org.sbml.jsbml.JSBML: Reads an SBML document from the given file.
readSBMLFromFile(String) - Method in class org.sbml.jsbml.SBMLReader: Reads an SBML document from a file.
readSBMLFromStream(InputStream) - Method in class org.sbml.jsbml.SBMLReader: Reads an SBML document from a data stream.
readSBMLFromStream(InputStream) - Method in class org.sbml.jsbml.xml.stax.SBMLReader
readSBMLFromStream(InputStream, TreeNodeChangeListener) - Method in class org.sbml.jsbml.xml.stax.SBMLReader: Reads a SBML document from the given stream.
readSBMLFromString(String) - Static method in class org.sbml.jsbml.JSBML: Reads an SBML document from a string assumed to be in XML format.
readSBMLFromString(String) - Method in class org.sbml.jsbml.SBMLReader: Reads an SBML document from the given XML string.
readSBMLFromString(String) - Method in class org.sbml.jsbml.xml.stax.SBMLReader
readSBMLFromString(String, TreeNodeChangeListener) - Method in class org.sbml.jsbml.xml.stax.SBMLReader: Reads a SBML model from the given XML String.
REAL - org.sbml.jsbml.ASTNode.Type: ASTNode.Type of an ASTNode that represents a single real value, i.e., a double number.
REAL_E - org.sbml.jsbml.ASTNode.Type: ASTNode.Type of an ASTNode with a real value that is split in a double mantissa and an integer exponent.
REAL_FORMAT - Static variable in class org.sbml.jsbml.util.StringTools
rectangle - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
Rectangle - Class in org.sbml.jsbml.ext.render
Rectangle() - Constructor for class org.sbml.jsbml.ext.render.Rectangle: Creates a new Rectangle instance.
Rectangle(Rectangle) - Constructor for class org.sbml.jsbml.ext.render.Rectangle: Clone constructor
RectangleConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the Rectangle class.
RectangleConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RectangleConstraints
RecursiveCompartmentContainment - org.sbml.jsbml.SBMLException.Code: Recursive nesting of compartments via outside
RecursiveFunctionDefinition - org.sbml.jsbml.SBMLException.Code: Recursive function definition
reduceToBinary(ASTFunction) - Static method in class org.sbml.jsbml.math.ASTFactory: Reduces an ASTFunction to a binary tree, e.g., if the formula in the ASTFunction is and(x, y, z) then the formula of the reduced node would be and(and(x, y), z).
reference - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
referencedAttribute - Static variable in class org.sbml.jsbml.ext.arrays.ArraysConstants
referenceGlyph - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
ReferenceGlyph - Class in org.sbml.jsbml.ext.layout: The ReferenceGlyph element describes the graphical connection between an arbitrary GraphicalObject (or derived element) and a GeneralGlyph (which would be an arrow or some curve in most cases).
ReferenceGlyph() - Constructor for class org.sbml.jsbml.ext.layout.ReferenceGlyph
ReferenceGlyph(int, int) - Constructor for class org.sbml.jsbml.ext.layout.ReferenceGlyph
ReferenceGlyph(String) - Constructor for class org.sbml.jsbml.ext.layout.ReferenceGlyph
ReferenceGlyph(String, int, int) - Constructor for class org.sbml.jsbml.ext.layout.ReferenceGlyph
ReferenceGlyph(ReferenceGlyph) - Constructor for class org.sbml.jsbml.ext.layout.ReferenceGlyph
ReferenceGlyphConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the ReferenceGlyph class.
ReferenceGlyphConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.ReferenceGlyphConstraints
referenceRenderInformation - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
refersTo(String) - Method in class org.sbml.jsbml.ASTNode: Returns true if this node or one of its descendants contains some identifier with the given id.
refersTo(String) - Method in class org.sbml.jsbml.math.ASTCiFunctionNode
refersTo(String) - Method in class org.sbml.jsbml.math.ASTCiNumberNode
refersTo(String) - Method in class org.sbml.jsbml.math.ASTCSymbolAvogadroNode
refersTo(String) - Method in interface org.sbml.jsbml.math.ASTCSymbolBaseNode: Returns true if this node or one of its descendants contains some identifier with the given id.
refersTo(String) - Method in class org.sbml.jsbml.math.ASTCSymbolDelayNode
refersTo(String) - Method in class org.sbml.jsbml.math.ASTCSymbolTimeNode
refId - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
REFLECT - org.sbml.jsbml.ext.render.GradientBase.Spread: the gradient continues from end to start and then from start to end again and again.
register(SBase) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin
register(SBase) - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin
register(SBase) - Method in class org.sbml.jsbml.ext.spatial.SpatialModelPlugin
register(SBase) - Method in class org.sbml.jsbml.KineticLaw
register(SBase) - Method in class org.sbml.jsbml.Model
register(SBase) - Method in interface org.sbml.jsbml.util.IdManager: Registers the given SBase element and all of it's children in this IdManager.
registerChild(SBase) - Method in class org.sbml.jsbml.AbstractSBase
registerChild(SBase) - Method in interface org.sbml.jsbml.SBase: Sets this object as SBML parent of 'sbase'.
ReInit(InputStream) - Method in class org.sbml.jsbml.math.parser.FormulaParser: Reinitialise.
ReInit(InputStream) - Method in class org.sbml.jsbml.math.parser.FormulaParserASTNode2: Reinitialise.
ReInit(InputStream) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3: Reinitialise.
ReInit(InputStream) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2: Reinitialise.
ReInit(InputStream) - Method in interface org.sbml.jsbml.math.parser.IFormulaParser
ReInit(InputStream) - Method in class org.sbml.jsbml.math.parser.SimpleCharStream: Reinitialise.
ReInit(InputStream) - Method in class org.sbml.jsbml.text.parser.CobraFormulaParser: Reinitialise.
ReInit(InputStream) - Method in class org.sbml.jsbml.text.parser.FormulaParser: Reinitialise.
ReInit(InputStream) - Method in class org.sbml.jsbml.text.parser.FormulaParserASTNode2: Reinitialise.
ReInit(InputStream) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3: Reinitialise.
ReInit(InputStream) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2: Reinitialise.
ReInit(InputStream) - Method in interface org.sbml.jsbml.text.parser.IFormulaParser
ReInit(InputStream) - Method in class org.sbml.jsbml.text.parser.SimpleCharStream: Reinitialise.
ReInit(InputStream, int, int) - Method in class org.sbml.jsbml.math.parser.SimpleCharStream: Reinitialise.
ReInit(InputStream, int, int) - Method in class org.sbml.jsbml.text.parser.SimpleCharStream: Reinitialise.
ReInit(InputStream, int, int, int) - Method in class org.sbml.jsbml.math.parser.SimpleCharStream: Reinitialise.
ReInit(InputStream, int, int, int) - Method in class org.sbml.jsbml.text.parser.SimpleCharStream: Reinitialise.
ReInit(InputStream, String) - Method in class org.sbml.jsbml.math.parser.FormulaParser: Reinitialise.
ReInit(InputStream, String) - Method in class org.sbml.jsbml.math.parser.FormulaParserASTNode2: Reinitialise.
ReInit(InputStream, String) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3: Reinitialise.
ReInit(InputStream, String) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2: Reinitialise.
ReInit(InputStream, String) - Method in interface org.sbml.jsbml.math.parser.IFormulaParser
ReInit(InputStream, String) - Method in class org.sbml.jsbml.math.parser.SimpleCharStream: Reinitialise.
ReInit(InputStream, String) - Method in class org.sbml.jsbml.text.parser.CobraFormulaParser: Reinitialise.
ReInit(InputStream, String) - Method in class org.sbml.jsbml.text.parser.FormulaParser: Reinitialise.
ReInit(InputStream, String) - Method in class org.sbml.jsbml.text.parser.FormulaParserASTNode2: Reinitialise.
ReInit(InputStream, String) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3: Reinitialise.
ReInit(InputStream, String) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2: Reinitialise.
ReInit(InputStream, String) - Method in interface org.sbml.jsbml.text.parser.IFormulaParser
ReInit(InputStream, String) - Method in class org.sbml.jsbml.text.parser.SimpleCharStream: Reinitialise.
ReInit(InputStream, String, int, int) - Method in class org.sbml.jsbml.math.parser.SimpleCharStream: Reinitialise.
ReInit(InputStream, String, int, int) - Method in class org.sbml.jsbml.text.parser.SimpleCharStream: Reinitialise.
ReInit(InputStream, String, int, int, int) - Method in class org.sbml.jsbml.math.parser.SimpleCharStream: Reinitialise.
ReInit(InputStream, String, int, int, int) - Method in class org.sbml.jsbml.text.parser.SimpleCharStream: Reinitialise.
ReInit(Reader) - Method in class org.sbml.jsbml.math.parser.FormulaParser: Reinitialise.
ReInit(Reader) - Method in class org.sbml.jsbml.math.parser.FormulaParserASTNode2: Reinitialise.
ReInit(Reader) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3: Reinitialise.
ReInit(Reader) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2: Reinitialise.
ReInit(Reader) - Method in interface org.sbml.jsbml.math.parser.IFormulaParser
ReInit(Reader) - Method in class org.sbml.jsbml.math.parser.SimpleCharStream: Reinitialise.
ReInit(Reader) - Method in class org.sbml.jsbml.text.parser.CobraFormulaParser: Reinitialise.
ReInit(Reader) - Method in class org.sbml.jsbml.text.parser.FormulaParser: Reinitialise.
ReInit(Reader) - Method in class org.sbml.jsbml.text.parser.FormulaParserASTNode2: Reinitialise.
ReInit(Reader) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3: Reinitialise.
ReInit(Reader) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2: Reinitialise.
ReInit(Reader) - Method in interface org.sbml.jsbml.text.parser.IFormulaParser
ReInit(Reader) - Method in class org.sbml.jsbml.text.parser.SimpleCharStream: Reinitialise.
ReInit(Reader, int, int) - Method in class org.sbml.jsbml.math.parser.SimpleCharStream: Reinitialise.
ReInit(Reader, int, int) - Method in class org.sbml.jsbml.text.parser.SimpleCharStream: Reinitialise.
ReInit(Reader, int, int, int) - Method in class org.sbml.jsbml.math.parser.SimpleCharStream: Reinitialise.
ReInit(Reader, int, int, int) - Method in class org.sbml.jsbml.text.parser.SimpleCharStream: Reinitialise.
ReInit(FormulaParserASTNode2TokenManager) - Method in class org.sbml.jsbml.math.parser.FormulaParserASTNode2: Reinitialise.
ReInit(FormulaParserLL3ASTNode2TokenManager) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2: Reinitialise.
ReInit(FormulaParserLL3TokenManager) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3: Reinitialise.
ReInit(FormulaParserTokenManager) - Method in class org.sbml.jsbml.math.parser.FormulaParser: Reinitialise.
ReInit(SimpleCharStream) - Method in class org.sbml.jsbml.math.parser.FormulaParserASTNode2TokenManager: Reinitialise parser.
ReInit(SimpleCharStream) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2TokenManager: Reinitialise parser.
ReInit(SimpleCharStream) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3TokenManager: Reinitialise parser.
ReInit(SimpleCharStream) - Method in class org.sbml.jsbml.math.parser.FormulaParserTokenManager: Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class org.sbml.jsbml.math.parser.FormulaParserASTNode2TokenManager: Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2TokenManager: Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3TokenManager: Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class org.sbml.jsbml.math.parser.FormulaParserTokenManager: Reinitialise parser.
ReInit(CobraFormulaParserTokenManager) - Method in class org.sbml.jsbml.text.parser.CobraFormulaParser: Reinitialise.
ReInit(FormulaParserASTNode2TokenManager) - Method in class org.sbml.jsbml.text.parser.FormulaParserASTNode2: Reinitialise.
ReInit(FormulaParserLL3ASTNode2TokenManager) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2: Reinitialise.
ReInit(FormulaParserLL3TokenManager) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3: Reinitialise.
ReInit(FormulaParserTokenManager) - Method in class org.sbml.jsbml.text.parser.FormulaParser: Reinitialise.
ReInit(SimpleCharStream) - Method in class org.sbml.jsbml.text.parser.CobraFormulaParserTokenManager: Reinitialise parser.
ReInit(SimpleCharStream) - Method in class org.sbml.jsbml.text.parser.FormulaParserASTNode2TokenManager: Reinitialise parser.
ReInit(SimpleCharStream) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2TokenManager: Reinitialise parser.
ReInit(SimpleCharStream) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3TokenManager: Reinitialise parser.
ReInit(SimpleCharStream) - Method in class org.sbml.jsbml.text.parser.FormulaParserTokenManager: Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class org.sbml.jsbml.text.parser.CobraFormulaParserTokenManager: Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class org.sbml.jsbml.text.parser.FormulaParserASTNode2TokenManager: Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2TokenManager: Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3TokenManager: Reinitialise parser.
ReInit(SimpleCharStream, int) - Method in class org.sbml.jsbml.text.parser.FormulaParserTokenManager: Reinitialise parser.
RelAbsVector - Class in org.sbml.jsbml.ext.render: Implements the RelAbsVector-datatype defined in the render-specification: A RelAbsVector encodes a single number as a combination of an absolute and a relative part: "a + r%", where the relative part is with respect to some surrounding space (like a boundingBox).
This implementation deviates from the one in libSBML in that the support for ,Coordinate' get/set/isSet is reduced
RelAbsVector() - Constructor for class org.sbml.jsbml.ext.render.RelAbsVector
RelAbsVector(double) - Constructor for class org.sbml.jsbml.ext.render.RelAbsVector: Set only the absolute, but not the relative part, to an initial value
RelAbsVector(double, double) - Constructor for class org.sbml.jsbml.ext.render.RelAbsVector: Set both the relative and absolute parts to initial values
RelAbsVector(String) - Constructor for class org.sbml.jsbml.ext.render.RelAbsVector: Set from a XML-String in the format "a" or "r%" or "a+r%" or "a-r%", as described in the render-specification
RelAbsVector(RelAbsVector) - Constructor for class org.sbml.jsbml.ext.render.RelAbsVector: Copy-constructor
relation - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
Relation - Enum in org.sbml.jsbml.ext.multi: The Relation enumeration is used in the definition of the ListOfSpeciesFeatures class.
relational(ASTNode.Type, ASTNode2, ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory: Creates a relational ASTRelationalOperatorNode of the given type with the two given children left and right.
RELATIONAL_EQ - org.sbml.jsbml.ASTNode.Type: An ASTNode of this ASTNode.Type represents the relation symbol '=' to compare the values of all of its successors in the tree for equality.
RELATIONAL_GEQ - org.sbml.jsbml.ASTNode.Type: Greater or equal
RELATIONAL_GT - org.sbml.jsbml.ASTNode.Type: Greater than
RELATIONAL_LEQ - org.sbml.jsbml.ASTNode.Type: Less or equal
RELATIONAL_LT - org.sbml.jsbml.ASTNode.Type: Less than
RELATIONAL_NEQ - org.sbml.jsbml.ASTNode.Type: Not equal
relativeValue - Static variable in class org.sbml.jsbml.ext.render.RenderConstants: Refers to the relative part of a RelAbsVector
rem(List<ASTNode>) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
rem(List<ASTNode>) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
rem(List<ASTNode>) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
rem(List<ASTNode>) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler: Returns the remainder of the division of the values.
rem(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
rem(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
rem(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
rem(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler: Deprecated.
rem(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
remove(int) - Method in class org.sbml.jsbml.ListOf
remove(int) - Method in class org.sbml.jsbml.xml.XMLAttributes: Removes an attribute with the given index from this XMLAttributes set.
remove(int) - Method in class org.sbml.jsbml.xml.XMLNamespaces: Removes an XML Namespace stored in the given position of this list.
remove(Object) - Method in class org.sbml.jsbml.ListOf
remove(String) - Method in class org.sbml.jsbml.ListOf: Specialized method to remove a named SBase according to its unique id.
remove(String) - Method in class org.sbml.jsbml.Model: Removes any UniqueNamedSBase with the given identifier from this Model and returns the removed element if the operation was successful.
remove(String) - Method in class org.sbml.jsbml.xml.XMLAttributes: Removes an attribute with the given local name from this XMLAttributes set.
remove(String) - Method in class org.sbml.jsbml.xml.XMLNamespaces: Removes an XML Namespace with the given prefix.
remove(String, String) - Method in class org.sbml.jsbml.xml.XMLAttributes: Removes an attribute with the given local name and namespace URI from this XMLAttributes set.
remove(SBase) - Method in class org.sbml.jsbml.ListOf: Removes a SBase according to its unique id.
remove(AnyConstraint<T>) - Method in class org.sbml.jsbml.validator.offline.constraints.ConstraintGroup: Removes the constraint from the group.
remove(XMLTriple) - Method in class org.sbml.jsbml.xml.XMLAttributes: Removes an attribute with the given XMLTriple from this XMLAttributes set.
removeAdjacentDomain(int) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfAdjacentDomains at the given index.
removeAdjacentDomain(String) - Method in class org.sbml.jsbml.ext.spatial.Geometry
removeAdjacentDomain(AdjacentDomains) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfAdjacentDomains.
removeAll(Collection<?>) - Method in class org.sbml.jsbml.ListOf
removeAll(Filter) - Method in class org.sbml.jsbml.ListOf: Removes all elements from this list that are accepted by the Filter.accepts(Object) method of the given filter.
removeAllAssociations() - Method in class org.sbml.jsbml.ext.fbc.LogicalOperator: Returns true if LogicalOperator.listOfAssociations contains at least one element, otherwise false.
removeAllTreeNodeChangeListeners() - Method in class org.sbml.jsbml.AbstractTreeNode
removeAllTreeNodeChangeListeners() - Method in class org.sbml.jsbml.math.ASTUnknown
removeAllTreeNodeChangeListeners() - Method in interface org.sbml.jsbml.util.TreeNodeWithChangeSupport: Removes all tree node change listeners from this element.
removeAllTreeNodeChangeListeners(boolean) - Method in class org.sbml.jsbml.AbstractTreeNode
removeAllTreeNodeChangeListeners(boolean) - Method in class org.sbml.jsbml.math.ASTUnknown
removeAllTreeNodeChangeListeners(boolean) - Method in interface org.sbml.jsbml.util.TreeNodeWithChangeSupport: Removes all tree node change listeners recursively from this element.
removeAnalyticVolume(int) - Method in class org.sbml.jsbml.ext.spatial.AnalyticGeometry: Removes an element from the listOfAnalyticVolumes at the given index.
removeAnalyticVolume(String) - Method in class org.sbml.jsbml.ext.spatial.AnalyticGeometry
removeAnalyticVolume(AnalyticVolume) - Method in class org.sbml.jsbml.ext.spatial.AnalyticGeometry: Removes an element from the listOfAnalyticVolumes.
removeAssociation(int) - Method in class org.sbml.jsbml.ext.fbc.LogicalOperator: Removes an element from the listOfAssociations at the given index.
removeAssociation(Association) - Method in class org.sbml.jsbml.ext.fbc.LogicalOperator: Removes an element from the LogicalOperator.listOfAssociations.
removeAttr(int) - Method in class org.sbml.jsbml.xml.XMLToken: Removes an attribute with the given index from the attribute set in this XMLToken.
removeAttr(String) - Method in class org.sbml.jsbml.xml.XMLToken: Removes an attribute with the given local name from the attribute set in this XMLToken.
removeAttr(String, String) - Method in class org.sbml.jsbml.xml.XMLToken: Removes an attribute with the given local name and namespace URI from the attribute set in this XMLToken.
removeAttr(XMLTriple) - Method in class org.sbml.jsbml.xml.XMLToken: Removes an attribute with the given XMLTriple from the attribute set in this XMLToken.
removeBasePoint1() - Method in class org.sbml.jsbml.ext.layout.CubicBezier: Removes the basepoint 1 from this CubicBezier
After calling this method, CubicBezier.isSetBasePoint1() is false
removeBasePoint2() - Method in class org.sbml.jsbml.ext.layout.CubicBezier: Removes the basepoint 2 from this CubicBezier
After calling this method, CubicBezier.isSetBasePoint2() is false
removeChangedMath(int) - Method in class org.sbml.jsbml.ext.req.ReqSBasePlugin: Removes an element from the listOfChangedMaths at the given index.
removeChangedMath(String) - Method in class org.sbml.jsbml.ext.req.ReqSBasePlugin: Removes an element from the listOfChangedMaths with the given id.
removeChangedMath(ChangedMath) - Method in class org.sbml.jsbml.ext.req.ReqSBasePlugin: Removes an element from the listOfChangedMaths.
removeChild(int) - Method in class org.sbml.jsbml.ASTNode: Removes child n of this ASTNode.
removeChild(int) - Method in class org.sbml.jsbml.math.ASTBinaryFunctionNode
removeChild(int) - Method in class org.sbml.jsbml.math.ASTFunction: Removes child n of this ASTFunction.
removeChild(int) - Method in class org.sbml.jsbml.math.ASTUnaryFunctionNode
removeChild(int) - Method in class org.sbml.jsbml.xml.XMLNode: Removes the nth child of this XMLNode and returns the removed node.
removeChild(XMLNode) - Method in class org.sbml.jsbml.xml.XMLNode: Removes the first occurrence of the specified element from this list.
removeChildren() - Method in class org.sbml.jsbml.xml.XMLNode: Removes all children from this node.
removeColorDefinition(int) - Method in class org.sbml.jsbml.ext.render.RenderInformationBase
removeColorDefinition(String) - Method in class org.sbml.jsbml.ext.render.RenderInformationBase
removeColorDefinition(ColorDefinition) - Method in class org.sbml.jsbml.ext.render.RenderInformationBase
removeCompartment(int) - Method in class org.sbml.jsbml.Model: Removes the i-th Compartment of the Model.
removeCompartment(String) - Method in class org.sbml.jsbml.Model: Removes the Compartment of the Model with 'id' as id.
removeCompartmentGlyph(int) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the listOfCompartmentGlyphs at the given index.
removeCompartmentGlyph(String) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the listOfCompartmentGlyphs.
removeCompartmentGlyph(CompartmentGlyph) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the listOfCompartmentGlyphs.
removeCompartmentReference(int) - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin: Removes an element from the MultiCompartmentPlugin.listOfCompartmentReferences at the given index.
removeCompartmentReference(String) - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin: Removes an element from the MultiCompartmentPlugin.listOfCompartmentReferences.
removeCompartmentReference(CompartmentReference) - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin: Removes an element from the MultiCompartmentPlugin.listOfCompartmentReferences.
removeCompartmentType(int) - Method in class org.sbml.jsbml.Model: Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
removeCompartmentType(String) - Method in class org.sbml.jsbml.Model: Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
removeConstantId(String) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler: Removes an id from the list.
removeConstraint(int) - Method in class org.sbml.jsbml.Model: Removes the n-th Constraint of the Model.
removeCoordinateComponent(int) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfCoordinateComponents at the given index.
removeCoordinateComponent(String) - Method in class org.sbml.jsbml.ext.spatial.Geometry
removeCoordinateComponent(CoordinateComponent) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfCoordinateComponents.
removeCreator(int) - Method in class org.sbml.jsbml.History: If there is no i^th Creator, it returns null.
removeCSGNode(int) - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator: Removes an element from the listOfCSGNodes at the given index.
removeCSGNode(String) - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator
removeCSGNode(CSGNode) - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator: Removes an element from the listOfCSGNodes.
removeCSGObject(int) - Method in class org.sbml.jsbml.ext.spatial.CSGeometry: Removes an element from the listOfCSGObjects at the given index.
removeCSGObject(CSGObject) - Method in class org.sbml.jsbml.ext.spatial.CSGeometry: Removes an element from the listOfCSGObjects.
removeCurveSegment(int) - Method in class org.sbml.jsbml.ext.layout.Curve
removeCurveSegment(int) - Method in class org.sbml.jsbml.ext.render.Polygon: Removes an element from the Polygon.listOfCurveSegments at the given index.
removeCurveSegment(int) - Method in class org.sbml.jsbml.ext.render.RenderCurve: Removes an element from the RenderCurve.listOfCurveSegments at the given index.
removeCurveSegment(CurveSegment) - Method in class org.sbml.jsbml.ext.layout.Curve
removeCurveSegment(CurveSegment) - Method in interface org.sbml.jsbml.ext.layout.ICurve
removeCurveSegment(CurveSegment) - Method in class org.sbml.jsbml.ext.render.Polygon: Removes an element from the Polygon.listOfCurveSegments.
removeCurveSegment(CurveSegment) - Method in class org.sbml.jsbml.ext.render.RenderCurve: Removes an element from the RenderCurve.listOfCurveSegments.
removeCVTerm - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
removeCVTerm(int) - Method in class org.sbml.jsbml.AbstractSBase: Removes the CVTerm at the given index.
removeCVTerm(int) - Method in class org.sbml.jsbml.Annotation: Removes the CVTerm at the given index.
removeCVTerm(int) - Method in interface org.sbml.jsbml.SBase: Removes the CVTerm at the given index.
removeCVTerm(CVTerm) - Method in class org.sbml.jsbml.AbstractSBase: Removes the given CVTerm.
removeCVTerm(CVTerm) - Method in class org.sbml.jsbml.Annotation: Removes the given CVTerm.
removeCVTerm(CVTerm) - Method in interface org.sbml.jsbml.SBase: Removes the given CVTerm.
removeDeclaredNamespaceByNamespace(String) - Method in class org.sbml.jsbml.AbstractSBase: Removes a namespace from the set of declared namespaces of this SBase.
removeDeclaredNamespaceByNamespace(String) - Method in interface org.sbml.jsbml.SBase: Removes a namespace from the set of declared namespaces of this SBase.
removeDeclaredNamespaceByPrefix(String) - Method in class org.sbml.jsbml.AbstractSBase: Removes a namespace from the set of declared namespaces of this SBase.
removeDeclaredNamespaceByPrefix(String) - Method in interface org.sbml.jsbml.SBase: Removes a namespace from the set of declared namespaces of this SBase.
removeDeletion(int) - Method in class org.sbml.jsbml.ext.comp.Submodel: Removes an element from the listOfDeletions at the given index.
removeDeletion(String) - Method in class org.sbml.jsbml.ext.comp.Submodel: Removes an element from the listOfDeletions with the given id.
removeDeletion(Deletion) - Method in class org.sbml.jsbml.ext.comp.Submodel: Removes an element from the listOfDeletions.
removeDimension(int) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin: Removes an element from the listOfDimensions at the given index.
removeDimension(String) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin: Removes an element from the listOfDimensions.
removeDimension(Dimension) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin: Removes an element from the listOfDimensions.
removeDimensionByArrayDimension(int) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin: Removes an element from the listOfDimensions by array dimension.
removeDomain(int) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfDomains at the given index.
removeDomain(String) - Method in class org.sbml.jsbml.ext.spatial.Geometry
removeDomain(Domain) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfDomains.
removeDomainType(int) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfDomainTypes at the given index.
removeDomainType(String) - Method in class org.sbml.jsbml.ext.spatial.Geometry
removeDomainType(DomainType) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfDomainTypes.
removeDynElement(int) - Method in class org.sbml.jsbml.ext.dyn.DynEventPlugin: Removes the ith element from the listOfDynElements
removeDynElement(DynElement) - Method in class org.sbml.jsbml.ext.dyn.DynEventPlugin: Removes an element from the listOfDynElements
removeElement(int) - Method in class org.sbml.jsbml.ext.render.Polygon
removeElement(int) - Method in class org.sbml.jsbml.ext.render.RenderCurve
removeElement(int) - Method in class org.sbml.jsbml.ext.render.RenderGroup: Removes an element from the listOfElements at the given index.
removeElement(String) - Method in class org.sbml.jsbml.ext.render.RenderGroup: Removes an element from the listOfElements.
removeElement(RenderPoint) - Method in class org.sbml.jsbml.ext.render.Polygon
removeElement(RenderPoint) - Method in class org.sbml.jsbml.ext.render.RenderCurve
removeElement(Transformation2D) - Method in class org.sbml.jsbml.ext.render.RenderGroup: Removes an element from the listOfElements.
removeEnd() - Method in class org.sbml.jsbml.ext.layout.CurveSegment
removeEvent(int) - Method in class org.sbml.jsbml.Model: Removes the n-th Event of the Model.
removeEvent(String) - Method in class org.sbml.jsbml.Model: Removes the Event of the Model with 'id' as id.
removeEventAssignment(int) - Method in class org.sbml.jsbml.Event: Removes an element from the listOfEventAssignments at the given index.
removeEventAssignment(String) - Method in class org.sbml.jsbml.Event: Removes an element from the listOfEventAssignments.
removeEventAssignment(EventAssignment) - Method in class org.sbml.jsbml.Event: Removes an element from the listOfEventAssignments.
removeExternalModelDefinition(int) - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin: Removes an element from the listOfExternalModelDefinitions at the given index.
removeExternalModelDefinition(String) - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin: Removes an element from the listOfExternalModelDefinitions with the given id.
removeExternalModelDefinition(ExternalModelDefinition) - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin: Removes an element from the listOfExternalModelDefinitions.
removeField(String) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler: Removes an element from the idToValue.
removeFilter(Filter) - Method in class org.sbml.jsbml.util.filters.AndFilter
removeFirst(Filter) - Method in class org.sbml.jsbml.ListOf: Removes the first element from this list that is accepted by the Filter.accepts(Object) method of the given filter.
removeFluxBound(int) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin: Deprecated.
Only defined in FBC version 1.
removeFluxBound(FluxBound) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin: Deprecated.
Only defined in FBC version 1.
removeFluxObjective(int) - Method in class org.sbml.jsbml.ext.fbc.Objective: Removes an element from the listOfFluxObjectives at the given index.
removeFluxObjective(String) - Method in class org.sbml.jsbml.ext.fbc.Objective: Removes an element from the listOfFluxObjectives with the given id.
removeFluxObjective(FluxObjective) - Method in class org.sbml.jsbml.ext.fbc.Objective: Removes an element from the listOfFluxObjectives.
removeFromParent() - Method in class org.sbml.jsbml.AbstractTreeNode: This method is designed to be overridden for non-independent child nodes
removeFromParent() - Method in class org.sbml.jsbml.CVTerm
removeFromParent() - Method in class org.sbml.jsbml.ext.AbstractASTNodePlugin
removeFromParent() - Method in class org.sbml.jsbml.ext.AbstractSBasePlugin
removeFromParent() - Method in class org.sbml.jsbml.ext.comp.ReplacedBy
removeFromParent() - Method in class org.sbml.jsbml.math.ASTUnknown
removeFromParent() - Method in interface org.sbml.jsbml.util.TreeNodeWithChangeSupport: Removes itself from its parent.
removeFunctionDefinition(int) - Method in class org.sbml.jsbml.Model: Removes the n-th FunctionDefinition of the Model.
removeFunctionDefinition(String) - Method in class org.sbml.jsbml.Model: Removes the FunctionDefinition of the Model with 'id' as id.
removeFunctionTerm(int) - Method in class org.sbml.jsbml.ext.qual.Transition
removeFunctionTerm(FunctionTerm) - Method in class org.sbml.jsbml.ext.qual.Transition
removeGeneProduct(int) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin: Removes an element from the listOfGeneProducts at the given index.
removeGeneProduct(String) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin: Removes an element from the FBCModelPlugin.listOfGeneProducts.
removeGeneProduct(GeneProduct) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin: Removes an element from the FBCModelPlugin.listOfGeneProducts.
removeGeneralGlyph(int) - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph: Removes an element from the GeneralGlyph.listOfSubGlyphs at the given index.
removeGeneralGlyph(int) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the Layout.listOfAdditionalGraphicalObjects at the given index.
removeGeneralGlyph(String) - Method in class org.sbml.jsbml.ext.layout.Layout
removeGeneralGlyph(GeneralGlyph) - Method in class org.sbml.jsbml.ext.layout.Layout
removeGeneralGlyph(GraphicalObject) - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph: Removes an element from the listOfSubGlyphs.
removeGeometryDefinition(int) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfGeometryDefinitions at the given index.
removeGeometryDefinition(int) - Method in class org.sbml.jsbml.ext.spatial.MixedGeometry: Removes an element from the listOfGeometryDefinitions at the given index.
removeGeometryDefinition(String) - Method in class org.sbml.jsbml.ext.spatial.Geometry
removeGeometryDefinition(GeometryDefinition) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfGeometryDefinitions.
removeGeometryDefinition(GeometryDefinition) - Method in class org.sbml.jsbml.ext.spatial.MixedGeometry: Removes an element from the listOfGeometryDefinitions.
removeGlobalRenderInformation(int) - Method in class org.sbml.jsbml.ext.render.RenderListOfLayoutsPlugin
removeGlobalRenderInformation(String) - Method in class org.sbml.jsbml.ext.render.RenderListOfLayoutsPlugin
removeGlobalRenderInformation(GlobalRenderInformation) - Method in class org.sbml.jsbml.ext.render.RenderListOfLayoutsPlugin
removeGradientBase(int) - Method in class org.sbml.jsbml.ext.render.RenderInformationBase
removeGradientBase(GradientBase) - Method in class org.sbml.jsbml.ext.render.RenderInformationBase
removeGradientStop(int) - Method in class org.sbml.jsbml.ext.render.GradientBase
removeGradientStop(GradientStop) - Method in class org.sbml.jsbml.ext.render.GradientBase
removeIndex(int) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin: Removes an element from the listOfIndices at the given index.
removeIndex(Index) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin: Removes an element from the listOfIndices.
removeIndexByArrayDimension(int) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin: Removes an element from the listOfIndices based on array dimension.
removeInitialAssignment(int) - Method in class org.sbml.jsbml.Model: Removes the n-th InitialAssignment of the Model.
removeInput(int) - Method in class org.sbml.jsbml.ext.qual.Transition
removeInput(Input) - Method in class org.sbml.jsbml.ext.qual.Transition
removeInSpeciesTypeBond(int) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfInSpeciesTypeBonds at the given index.
removeInSpeciesTypeBond(String) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfInSpeciesTypeBonds.
removeInSpeciesTypeBond(InSpeciesTypeBond) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfInSpeciesTypeBonds.
removeInteriorPoint(int) - Method in class org.sbml.jsbml.ext.spatial.Domain: Removes an element from the listOfInteriorPoints at the given index.
removeInteriorPoint(InteriorPoint) - Method in class org.sbml.jsbml.ext.spatial.Domain: Removes an element from the listOfInteriorPoints.
removeLineEnding(int) - Method in class org.sbml.jsbml.ext.render.RenderInformationBase
removeLineEnding(LineEnding) - Method in class org.sbml.jsbml.ext.render.RenderInformationBase
removeLocalParameter(int) - Method in class org.sbml.jsbml.KineticLaw: Removes the ith LocalParameter from this object.
removeLocalParameter(String) - Method in class org.sbml.jsbml.KineticLaw: Removes a LocalParameter from this object based on its 'id'.
removeLocalParameter(LocalParameter) - Method in class org.sbml.jsbml.KineticLaw: Removes the LocalParameter 'p' from the KineticLaw.listOfLocalParameters of this KineticLaw according to its 'id'.
removeLocalRenderInformation(int) - Method in class org.sbml.jsbml.ext.render.RenderLayoutPlugin
removeLocalRenderInformation(String) - Method in class org.sbml.jsbml.ext.render.RenderLayoutPlugin
removeLocalRenderInformation(LocalRenderInformation) - Method in class org.sbml.jsbml.ext.render.RenderLayoutPlugin
removeLocalStyle(int) - Method in class org.sbml.jsbml.ext.render.LocalRenderInformation
removeLocalStyle(LocalStyle) - Method in class org.sbml.jsbml.ext.render.LocalRenderInformation
removeMember(int) - Method in class org.sbml.jsbml.ext.groups.Group: Removes an element from the Group.listOfMembers at the given index.
removeMember(String) - Method in class org.sbml.jsbml.ext.groups.Group: Removes an element from the Group.listOfMembers.
removeMember(Member) - Method in class org.sbml.jsbml.ext.groups.Group: Removes an element from the Group.listOfMembers.
removeModelDefinition(int) - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin: Removes an element from the listOfModelDefinitions at the given index.
removeModelDefinition(String) - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin: Removes an element from the listOfModelDefinitions with the given id.
removeModelDefinition(ModelDefinition) - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin: Removes an element from the listOfModelDefinitions.
removeModifiedDate(int) - Method in class org.sbml.jsbml.History: If there is no i^th modified Date, it returns null.
removeModifier(int) - Method in class org.sbml.jsbml.Reaction: Removes the nth modifier species (ModifierSpeciesReference object) in the list of modifiers in this Reaction and returns it.
removeModifier(String) - Method in class org.sbml.jsbml.Reaction: Removes the modifier species (ModifierSpeciesReference object) having the given 'species' attribute in the list of modifiers in this Reaction and returns it.
removeModifier(ModifierSpeciesReference) - Method in class org.sbml.jsbml.Reaction: Removes the ModifierSpeciesReference 'modspecref' from this Reaction.
removeMultiplier() - Method in class org.sbml.jsbml.Unit: This method tries to remove the Unit.multiplier of this unit.
removeNamespace(int) - Method in class org.sbml.jsbml.xml.XMLToken: Removes an XML Namespace stored in the given position of the XMLNamespaces of this XMLToken.
removeNamespace(String) - Method in class org.sbml.jsbml.xml.XMLToken: Removes an XML Namespace with the given prefix.
removeNestedCVTerm(int) - Method in class org.sbml.jsbml.CVTerm: Removes an element from the CVTerm.listOfNestedCVTerms at the given index.
removeNestedCVTerm(CVTerm) - Method in class org.sbml.jsbml.CVTerm: Removes an element from the CVTerm.listOfNestedCVTerms.
removeObjective(int) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin: Removes an element from the listOfObjectives at the given index.
removeObjective(Objective) - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin: Removes an element from the listOfObjectives.
removeOffset() - Method in class org.sbml.jsbml.Unit: We remove the offset by expressing it within a new Unit.multiplier, m':
removeOrdinalMapping(int) - Method in class org.sbml.jsbml.ext.spatial.MixedGeometry: Removes an element from the listOfOrdinalMappings at the given index.
removeOrdinalMapping(OrdinalMapping) - Method in class org.sbml.jsbml.ext.spatial.MixedGeometry: Removes an element from the listOfOrdinalMappings.
removeOutput(int) - Method in class org.sbml.jsbml.ext.qual.Transition
removeOutput(Output) - Method in class org.sbml.jsbml.ext.qual.Transition
removeOutwardBindingSite(int) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin: Removes an element from the MultiSpeciesPlugin.listOfOutwardBindingSites at the given index.
removeOutwardBindingSite(OutwardBindingSite) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin: Removes an element from the MultiSpeciesPlugin.listOfOutwardBindingSites.
removePackage(String) - Method in class org.sbml.jsbml.util.PackageDisabler: Forcefully remove all occurrences of the package given by nameOrUri
removeParameter(int) - Method in class org.sbml.jsbml.KineticLaw: Deprecated.
use KineticLaw.removeLocalParameter(int)
removeParameter(int) - Method in class org.sbml.jsbml.Model: Removes the n-th Parameter of the Model.
removeParameter(String) - Method in class org.sbml.jsbml.KineticLaw: Deprecated.
use KineticLaw.removeLocalParameter(String)
removeParameter(String) - Method in class org.sbml.jsbml.Model: Removes the Parameter of the Model with 'id' as id.
removeParameter(Parameter) - Method in class org.sbml.jsbml.KineticLaw: Deprecated.
use KineticLaw.removeLocalParameter(LocalParameter)
removeParameter(Parameter) - Method in class org.sbml.jsbml.Model: Removes the Parameter 'parameter' from this Model.
removeParametricObject(int) - Method in class org.sbml.jsbml.ext.spatial.ParametricGeometry: Removes an element from the listOfParametricObjects at the given index.
removeParametricObject(ParametricObject) - Method in class org.sbml.jsbml.ext.spatial.ParametricGeometry: Removes an element from the listOfParametricObjects.
removePort(int) - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin: Removes an element from the listOfPorts at the given index.
removePort(Port) - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin: Removes an element from the listOfPorts.
removePossibleSpeciesFeatureValue(int) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureType: Removes an element from the SpeciesFeatureType.listOfPossibleSpeciesFeatureValues at the given index.
removePossibleSpeciesFeatureValue(String) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureType: Removes an element from the SpeciesFeatureType.listOfPossibleSpeciesFeatureValues.
removePossibleSpeciesFeatureValue(PossibleSpeciesFeatureValue) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureType: Removes an element from the SpeciesFeatureType.listOfPossibleSpeciesFeatureValues.
removeProduct(int) - Method in class org.sbml.jsbml.Reaction: Removes the nth product species (SpeciesReference object) in the list of products in this Reaction and returns it.
removeProduct(String) - Method in class org.sbml.jsbml.Reaction: Removes the product species (SpeciesReference object) having the given 'species' attribute in the list of products in this Reaction and returns it.
removeProduct(SpeciesReference) - Method in class org.sbml.jsbml.Reaction: Removes the SpeciesReference 'modspecref' from the listOfProducts of this Reaction.
removeQualitativeSpecies(QualitativeSpecies) - Method in class org.sbml.jsbml.ext.qual.QualModelPlugin
removeReactant(int) - Method in class org.sbml.jsbml.Reaction: Removes the nth reactant species (SpeciesReference object) in the list of reactants in this Reaction and returns it.
removeReactant(String) - Method in class org.sbml.jsbml.Reaction: Removes the reactant species (SpeciesReference object) having the given 'species' attribute in the list of reactants in this Reaction and returns it.
removeReactant(SpeciesReference) - Method in class org.sbml.jsbml.Reaction: Removes the SpeciesReference 'modspecref' from the listOfReactants of this Reaction.
removeReaction(int) - Method in class org.sbml.jsbml.Model: Removes the n-th Reaction of the Model.
removeReaction(String) - Method in class org.sbml.jsbml.Model: Removes the Reaction of the Model with 'id' as id.
removeReaction(Reaction) - Method in class org.sbml.jsbml.Model: Removes a reaction from the model.
removeReactionGlyph(int) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the Layout.listOfReactionGlyphs at the given index.
removeReactionGlyph(String) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the listOfReactionGlyphs.
removeReactionGlyph(ReactionGlyph) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the listOfReactionGlyphs.
removeReplacedElement(int) - Method in class org.sbml.jsbml.ext.comp.CompSBasePlugin: Removes the ith element from the ListOfReplacedElements.
removeReplacedElement(ReplacedElement) - Method in class org.sbml.jsbml.ext.comp.CompSBasePlugin: Removes an element from listOfReplacedElements.
removeResource(int) - Method in class org.sbml.jsbml.CVTerm: Removes the ith resource URI from the CVTerm.
removeResource(int) - Method in class org.sbml.jsbml.xml.XMLAttributes: Removes an attribute with the given index from this XMLAttributes set.
removeResource(String) - Method in class org.sbml.jsbml.CVTerm: Removes the first occurrence of the given resource URI from the CVTerm.
removeResourceURI(int) - Method in class org.sbml.jsbml.CVTerm
removeRule(int) - Method in class org.sbml.jsbml.Model: Removes the i-th Rule of the Model.
removeRule(String) - Method in class org.sbml.jsbml.Model: Removes the Rule of the Model with 'variableId' as variable.
removeRule(Rule) - Method in class org.sbml.jsbml.Model: Removes a Rule from the Model.
removeSampledField(int) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfSampledFields at the given index.
removeSampledField(String) - Method in class org.sbml.jsbml.ext.spatial.Geometry
removeSampledField(SampledField) - Method in class org.sbml.jsbml.ext.spatial.Geometry: Removes an element from the listOfSampledFields.
removeSampledVolume(int) - Method in class org.sbml.jsbml.ext.spatial.SampledFieldGeometry: Removes an element from the listOfSampledVolumes at the given index.
removeSampledVolume(String) - Method in class org.sbml.jsbml.ext.spatial.SampledFieldGeometry: Removes an element from the listOfSampledVolumes with the given id.
removeSampledVolume(SampledVolume) - Method in class org.sbml.jsbml.ext.spatial.SampledFieldGeometry: Removes an element from the listOfSampledVolumes.
removeScale() - Method in class org.sbml.jsbml.Unit: Manipulates the attributes of the Unit to express the unit with the value of the scale attribute reduced to zero.
removeScale(Unit) - Static method in class org.sbml.jsbml.Unit: Manipulates the attributes of the Unit to express the unit with the value of the scale attribute reduced to zero.
removeSingletons() - Method in class org.sbml.jsbml.ext.layout.Layout: Removes all singleton SpeciesGlyphs (no SpeciesReferenceGlyph in ReactionGlyph) and also removes their associated TextGlyphs
removeSpatialComponent(int) - Method in class org.sbml.jsbml.ext.dyn.DynCompartmentPlugin: Removes the ith element from the ListOfSpatialComponents
removeSpatialComponent(SpatialComponent) - Method in class org.sbml.jsbml.ext.dyn.DynCompartmentPlugin: Removes an element from the ListOfSpatialComponents
removeSpecies(int) - Method in class org.sbml.jsbml.Model: Removes the i-th Species of the Model.
removeSpecies(String) - Method in class org.sbml.jsbml.Model: Removes the Species of the Model with 'id' as id.
removeSpecies(Species) - Method in class org.sbml.jsbml.Model: Removes a species from the model.
removeSpeciesFeature(int) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin: Removes an element from the MultiSpeciesPlugin.listOfSpeciesFeatures at the given index.
removeSpeciesFeature(String) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin: Removes an element from the MultiSpeciesPlugin.listOfSpeciesFeatures.
removeSpeciesFeature(SpeciesFeature) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin: Removes an element from the MultiSpeciesPlugin.listOfSpeciesFeatures.
removeSpeciesFeatureType(int) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfSpeciesFeatureTypes at the given index.
removeSpeciesFeatureType(String) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfSpeciesFeatureTypes.
removeSpeciesFeatureType(SpeciesFeatureType) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfSpeciesFeatureTypes.
removeSpeciesFeatureValue(int) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature: Removes an element from the SpeciesFeature.listOfSpeciesFeatureValues at the given index.
removeSpeciesFeatureValue(SpeciesFeatureValue) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature: Removes an element from the SpeciesFeature.listOfSpeciesFeatureValues.
removeSpeciesGlyph(int) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the listOfSpeciesGlyphs at the given index.
removeSpeciesGlyph(String) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the listOfSpeciesGlyphs.
removeSpeciesGlyph(SpeciesGlyph) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the listOfSpeciesGlyphs.
removeSpeciesType(int) - Method in class org.sbml.jsbml.Model: Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
removeSpeciesType(String) - Method in class org.sbml.jsbml.Model: Deprecated.
Only valid in SBML Level 2 for Versions 2 through 4.
removeSpeciesTypeComponentIndex(int) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfSpeciesTypeComponentIndexes at the given index.
removeSpeciesTypeComponentIndex(String) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfSpeciesTypeComponentIndexes.
removeSpeciesTypeComponentIndex(SpeciesTypeComponentIndex) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfSpeciesTypeComponentIndexes.
removeSpeciesTypeComponentMapInProduct(int) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesReferencePlugin: Removes an element from the MultiSpeciesReferencePlugin.listOfSpeciesTypeComponentMapInProducts at the given index.
removeSpeciesTypeComponentMapInProduct(SpeciesTypeComponentMapInProduct) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesReferencePlugin: Removes an element from the MultiSpeciesReferencePlugin.listOfSpeciesTypeComponentMapInProducts.
removeSpeciesTypeInstance(int) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfSpeciesTypeInstances at the given index.
removeSpeciesTypeInstance(String) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfSpeciesTypeInstances.
removeSpeciesTypeInstance(SpeciesTypeInstance) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesType: Removes an element from the MultiSpeciesType.listOfSpeciesTypeInstances.
removeStart() - Method in class org.sbml.jsbml.ext.layout.CurveSegment
removeStyle(int) - Method in class org.sbml.jsbml.ext.render.GlobalRenderInformation
removeStyle(Style) - Method in class org.sbml.jsbml.ext.render.GlobalRenderInformation
removeSubGlyph(int) - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph: Removes an element from the GeneralGlyph.listOfSubGlyphs at the given index.
removeSubGlyph(GraphicalObject) - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph: Removes an element from the listOfSubGlyphs.
removeSubListOfSpeciesFeature(int) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin: Removes an element from the MultiSpeciesPlugin.listOfSubListOfSpeciesFeatures at the given index.
removeSubListOfSpeciesFeature(String) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin: Removes an element from the MultiSpeciesPlugin.listOfSubListOfSpeciesFeatures.
removeSubListOfSpeciesFeature(SubListOfSpeciesFeature) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin: Removes an element from the MultiSpeciesPlugin.listOfSubListOfSpeciesFeatures.
removeSubmodel(int) - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin: Removes an element from the listOfSubmodels at the given index.
removeSubmodel(String) - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin: Removes an element from the listOfSubmodels.
removeSubmodel(Submodel) - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin: Removes an element from the listOfSubmodels.
removeTextGlyph(int) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the listOfTextGlyphs at the given index.
removeTextGlyph(String) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the listOfTextGlyphs.
removeTextGlyph(TextGlyph) - Method in class org.sbml.jsbml.ext.layout.Layout: Removes an element from the listOfTextGlyphs.
removeTopLevelAnnotationElement(String) - Method in class org.sbml.jsbml.AbstractSBase
removeTopLevelAnnotationElement(String) - Method in interface org.sbml.jsbml.SBase: Removes the top-level element within the 'annotation' subelement of this SBML object with the given name.
removeTopLevelAnnotationElement(String, String) - Method in class org.sbml.jsbml.AbstractSBase
removeTopLevelAnnotationElement(String, String) - Method in interface org.sbml.jsbml.SBase: Removes the top-level element within the 'annotation' subelement of this SBML object with the given name and URI.
removeTopLevelAnnotationElement(String, String, boolean) - Method in class org.sbml.jsbml.AbstractSBase
removeTopLevelAnnotationElement(String, String, boolean) - Method in interface org.sbml.jsbml.SBase: Removes the top-level element within the 'annotation' subelement of this SBML object with the given name and URI.
removeTransition(Transition) - Method in class org.sbml.jsbml.ext.qual.QualModelPlugin
removeTreeNodeChangeListener(TreeNodeChangeListener) - Method in class org.sbml.jsbml.AbstractTreeNode
removeTreeNodeChangeListener(TreeNodeChangeListener) - Method in class org.sbml.jsbml.math.ASTUnknown
removeTreeNodeChangeListener(TreeNodeChangeListener) - Method in interface org.sbml.jsbml.SBase: Removes the given TreeNodeChangeListener from this element.
removeTreeNodeChangeListener(TreeNodeChangeListener) - Method in interface org.sbml.jsbml.util.TreeNodeWithChangeSupport: Removes recursively the given change listener from this element.
removeTreeNodeChangeListener(TreeNodeChangeListener, boolean) - Method in class org.sbml.jsbml.AbstractTreeNode
removeTreeNodeChangeListener(TreeNodeChangeListener, boolean) - Method in class org.sbml.jsbml.math.ASTUnknown
removeTreeNodeChangeListener(TreeNodeChangeListener, boolean) - Method in interface org.sbml.jsbml.util.TreeNodeWithChangeSupport: Removes the given change listener from this element.
removeUncertainty(int) - Method in class org.sbml.jsbml.ext.distrib.DistribSBasePlugin: Removes an element from the DistribSBasePlugin.listOfUncertainties at the given index.
removeUncertainty(String) - Method in class org.sbml.jsbml.ext.distrib.DistribSBasePlugin: Removes an element from the DistribSBasePlugin.listOfUncertainties.
removeUncertainty(Uncertainty) - Method in class org.sbml.jsbml.ext.distrib.DistribSBasePlugin: Removes an element from the DistribSBasePlugin.listOfUncertainties.
removeUncertParameter(int) - Method in class org.sbml.jsbml.ext.distrib.Uncertainty: Removes an element from the Uncertainty.listOfUncertParameters at the given index.
removeUncertParameter(int) - Method in class org.sbml.jsbml.ext.distrib.UncertParameter: Removes an element from the UncertParameter.listOfUncertParameters at the given index.
removeUncertParameter(String) - Method in class org.sbml.jsbml.ext.distrib.Uncertainty: Removes an element from the Uncertainty.listOfUncertParameters.
removeUncertParameter(String) - Method in class org.sbml.jsbml.ext.distrib.UncertParameter: Removes an element from the UncertParameter.listOfUncertParameters.
removeUncertParameter(UncertParameter) - Method in class org.sbml.jsbml.ext.distrib.Uncertainty: Removes an element from the Uncertainty.listOfUncertParameters.
removeUncertParameter(UncertParameter) - Method in class org.sbml.jsbml.ext.distrib.UncertParameter: Removes an element from the UncertParameter.listOfUncertParameters.
removeUnit(int) - Method in class org.sbml.jsbml.UnitDefinition: Removes the nth Unit object from this UnitDefinition object and returns a pointer to it.
removeUnitDefinition(int) - Method in class org.sbml.jsbml.Model: Removes the n-th UnitDefinition of the Model.
removeUnitDefinition(String) - Method in class org.sbml.jsbml.Model: Removes the UnitDefinition of the Model with 'id' as id.
removeUnitDefinition(UnitDefinition) - Method in class org.sbml.jsbml.Model: Removes a UnitDefinition of the Model.
removeUserObject(Object) - Method in class org.sbml.jsbml.AbstractTreeNode
removeUserObject(Object) - Method in class org.sbml.jsbml.math.ASTUnknown
removeUserObject(Object) - Method in interface org.sbml.jsbml.util.TreeNodeWithChangeSupport
removeValidationListener(ValidationListener) - Method in class org.sbml.jsbml.validator.offline.ValidationContext: Removes a ValidationListener from this context.
RENDER_10101 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1310101: To conform to the Render Package specification for SBML Level 3 Version 1, an SBML document must declare 'http://www.sbml.org/sbml/level3/version1/render/version1' as the XMLNamespace to use for elements of this package.
RENDER_10102 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1310102: Wherever they appear in an SBML document, elements and attributes from the Render Package must use the 'http://www.sbml.org/sbml/level3/version1/render/version1' namespace, declaring so either explicitly or implicitly.
RENDER_10301 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1310301: (Extends validation rule #10301 in the SBML Level 3 Core specification.
RENDER_10302 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1310302: The value of a 'render:id' must conform to the syntax of the <sbml> data type 'SId' Reference: L3V1 Render V1 Section
RENDER_20101 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320101: In all SBML documents using the Render Package, the <sbml> object must have the 'render:required' attribute.
RENDER_20102 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320102: The value of attribute 'render:required' on the <sbml> object must be of data type 'boolean'.
RENDER_20103 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320103: The value of attribute 'render:required' on the <sbml> object must be set to 'false'.
RENDER_20201 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320201: A <graphicalObject> object may have the optional attribute 'render:objectRole'.
RENDER_20202 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320202: The attribute 'render:objectRole' on a <graphicalObject> must have a value of data type 'string'.
RENDER_20301 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320301: A <layout> object may contain one and only one instance of the <listOfLocalRenderInformation> element.
RENDER_20302 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320302: The <listOfLocalRenderInformation> subobject on a <layout> object is optional, but if present, this container object must not be empty.
RENDER_20303 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320303: Apart from the general notes and annotations subobjects permitted on all SBML objects, a <listOfLocalRenderInformation> container object may only contain <localRenderInformation> objects.
RENDER_20304 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320304: A <listOfLocalRenderInformation> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_20305 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320305: A <listOfLocalRenderInformation> object may have the optional attributes 'render:versionMajor', 'render:versionMinor' and 'render:defaultValues'.
RENDER_20306 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320306: The attribute 'render:versionMajor' on a <listOfLocalRenderInformation> must have a value of data type 'integer', and must be non negative.
RENDER_20307 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320307: The attribute 'render:versionMinor' on a <listOfLocalRenderInformation> must have a value of data type 'integer', and must be non negative.
RENDER_20308 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320308: FIX ME: Encountered an unknown attribute type element in ValidationRulesForClass:write_attribute_type_rule Reference: L3V1 Render V1 Section
RENDER_20401 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320401: A <listOfLayouts> object may contain one and only one instance of the <listOfGlobalRenderInformation> element.
RENDER_20402 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320402: The <listOfGlobalRenderInformation> subobject on a <listOfLayouts> object is optional, but if present, this container object must not be empty.
RENDER_20403 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320403: Apart from the general notes and annotations subobjects permitted on all SBML objects, a <listOfGlobalRenderInformation> container object may only contain <globalRenderInformation> objects.
RENDER_20404 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320404: A <listOfGlobalRenderInformation> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_20405 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320405: A <listOfGlobalRenderInformation> object may have the optional attributes 'render:versionMajor', and 'render:versionMinor'.
RENDER_20406 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320406: The attribute 'render:versionMajor' on a <listOfLayouts> must have a value of data type 'integer', and must be non negative.
RENDER_20407 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320407: The attribute 'render:versionMinor' on a <listOfLayouts> must have a value of data type 'integer', and must be non negative.
RENDER_20408 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320408: FIX ME: Encountered an unknown attribute type element in ValidationRulesForClass:write_attribute_type_rule Reference: L3V1 Render V1 Section
RENDER_20501 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320501: A <colorDefinition> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_20502 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320502: A <colorDefinition> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_20503 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320503: A <colorDefinition> object must have the required attributes 'render:id' and 'render:value', and may have the optional attribute 'render:name'.
RENDER_20504 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320504: The attribute 'render:value' on a <colorDefinition> must have a value of data type 'string'.
RENDER_20505 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320505: The attribute 'render:name' on a <colorDefinition> must have a value of data type 'string'.
RENDER_20601 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320601: An <ellipse> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_20602 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320602: An <ellipse> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_20603 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320603: An <ellipse> object must have the required attributes 'render:cx', 'render:cy' and 'render:rx', and may have the optional attributes 'render:ratio', 'render:cz' and 'render:ry'.
RENDER_20604 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320604: The value of the attribute 'render:cx' of an <ellipse> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_20605 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320605: The value of the attribute 'render:cy' of an <ellipse> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_20606 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320606: The value of the attribute 'render:rx' of an <ellipse> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_20607 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320607: The attribute 'render:ratio' on an <ellipse> must have a value of data type 'double'.
RENDER_20608 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320608: The value of the attribute 'render:cz' of an <ellipse> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_20609 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320609: The value of the attribute 'render:ry' of an <ellipse> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_20701 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320701: A <globalRenderInformation> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_20702 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320702: A <globalRenderInformation> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_20703 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320703: A <globalRenderInformation> object may contain one and only one instance of the <listOfGlobalStyles> element.
RENDER_20704 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320704: The <listOfGlobalStyles> subobject on a <globalRenderInformation> object is optional, but if present, this container object must not be empty.
RENDER_20705 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320705: Apart from the general notes and annotations subobjects permitted on all SBML objects, a <listOfGlobalStyles> container object may only contain <globalStyle> objects.
RENDER_20706 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320706: A <listOfGlobalStyles> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_20801 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320801: A <globalStyle> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_20802 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320802: A <globalStyle> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_20901 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320901: A <gradientBase> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_20902 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320902: A <gradientBase> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_20903 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320903: A <gradientBase> object must have the required attribute 'render:id', and may have the optional attributes 'render:name' and 'render:spreadMethod'.
RENDER_20904 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320904: A GradientBase object must contain at least one instance of the GradientStop element.
RENDER_20905 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320905: The attribute 'render:name' on a <gradientBase> must have a value of data type 'string'.
RENDER_20906 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1320906: The value of the attribute 'render:spreadMethod' of a <gradientBase> object must conform to the syntax of SBML data type 'GradientSpreadMethod' and may only take on the allowed values of 'GradientSpreadMethod' defined in SBML; that is, the value must be one of the following: 'pad', 'reflect' or 'repeat'.
RENDER_21001 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321001: A <gradientStop> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21002 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321002: A <gradientStop> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_21003 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321003: A <gradientStop> object must have the required attributes 'render:stop-color' and 'render:offset'.
RENDER_21004 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321004: The attribute 'render:stop-color' on a <gradientStop> must have a value of data type 'string'.
RENDER_21005 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321005: The value of the attribute render:offset of a GradientStop object must conform to the syntax of SBML data type RelAbsVector but in this case can only encode a relative value i.e. a string encoding a number followed by a % sign.
RENDER_21101 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321101: A <renderGroup> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21102 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321102: A <renderGroup> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_21103 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321103: A <renderGroup> object may have the optional attributes 'render:startHead', 'render:endHead', 'render:font-family', 'render:font-weight', 'render:font-style', 'render:text-anchor', 'render:vtext-anchor' and 'render:font-size'.
RENDER_21104 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321104: A <renderGroup> object may contain one and only one instance of the <listOfElements> element.
RENDER_21105 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321105: The value of the attribute 'render:startHead' of a <renderGroup> object must be the identifier of an existing <lineEnding> object defined in the enclosing <model> object.
RENDER_21106 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321106: The value of the attribute 'render:endHead' of a <renderGroup> object must be the identifier of an existing <lineEnding> object defined in the enclosing <model> object.
RENDER_21107 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321107: The attribute 'render:font-family' on a <renderGroup> must have a value of data type 'string'.
RENDER_21108 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321108: The value of the attribute 'render:font-weight' of a <renderGroup> object must conform to the syntax of SBML data type 'FontWeight' and may only take on the allowed values of 'FontWeight' defined in SBML; that is, the value must be one of the following: 'bold' or 'normal'.
RENDER_21109 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321109: The value of the attribute 'render:font-style' of a <renderGroup> object must conform to the syntax of SBML data type 'FontStyle' and may only take on the allowed values of 'FontStyle' defined in SBML; that is, the value must be one of the following: 'italic' or 'normal'.
RENDER_21110 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321110: The value of the attribute 'render:text-anchor' of a <renderGroup> object must conform to the syntax of SBML data type 'HTextAnchor' and may only take on the allowed values of 'HTextAnchor' defined in SBML; that is, the value must be one of the following: 'start', 'middle' or 'end'.
RENDER_21111 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321111: The value of the attribute 'render:vtext-anchor' of a <renderGroup> object must conform to the syntax of SBML data type 'VTextAnchor' and may only take on the allowed values of 'VTextAnchor' defined in SBML; that is, the value must be one of the following: 'top', 'middle', 'bottom' or 'baseline'.
RENDER_21112 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321112: The value of the attribute 'render:font-size' of a <renderGroup> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21201 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321201: An <image> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21202 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321202: An <image> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_21203 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321203: An <image> object must have the required attributes 'render:href', 'render:x', 'render:y', 'render:width' and 'render:height', and may have the optional attributes 'render:id' and 'render:z'.
RENDER_21204 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321204: The attribute 'render:href' on an <image> must have a value of data type 'string'.
RENDER_21205 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321205: The value of the attribute 'render:x' of an <image> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21206 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321206: The value of the attribute 'render:y' of an <image> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21207 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321207: The value of the attribute 'render:width' of an <image> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21208 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321208: The value of the attribute 'render:height' of an <image> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21209 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321209: The attribute render:href on an Image must point to a local file of type "jpeg" or "png".
RENDER_21210 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321210: The value of the attribute 'render:z' of an <image> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21301 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321301: A <lineEnding> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21302 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321302: A <lineEnding> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_21303 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321303: A <lineEnding> object must have the required attribute 'render:id', and may have the optional attribute 'render:enableRotationalMapping'.
RENDER_21304 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321304: A <lineEnding> object may contain one and only one instance of each of the RenderGroup and BoundingBox elements.
RENDER_21305 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321305: The attribute 'render:enableRotationalMapping' on a <lineEnding> must have a value of data type 'boolean'.
RENDER_21401 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321401: A <linearGradient> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21402 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321402: A <linearGradient> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_21403 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321403: A <linearGradient> object may have the optional attributes 'render:x1', 'render:y1', 'render:z1', 'render:x2', 'render:y2' and 'render:z2'.
RENDER_21404 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321404: The value of the attribute 'render:x1' of a <linearGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21405 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321405: The value of the attribute 'render:y1' of a <linearGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21406 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321406: The value of the attribute 'render:z1' of a <linearGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21407 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321407: The value of the attribute 'render:x2' of a <linearGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21408 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321408: The value of the attribute 'render:y2' of a <linearGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21409 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321409: The value of the attribute 'render:z2' of a <linearGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21501 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321501: A <localRenderInformation> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21502 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321502: A <localRenderInformation> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_21503 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321503: A <localRenderInformation> object may contain one and only one instance of the <listOfLocalStyles> element.
RENDER_21504 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321504: The <listOfLocalStyles> subobject on a <localRenderInformation> object is optional, but if present, this container object must not be empty.
RENDER_21505 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321505: Apart from the general notes and annotations subobjects permitted on all SBML objects, a <listOfLocalStyles> container object may only contain <localStyle> objects.
RENDER_21506 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321506: A <listOfLocalStyles> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21601 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321601: A <localStyle> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21602 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321602: A <localStyle> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_21603 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321603: A <localStyle> object may have the optional attribute 'render:idList'.
RENDER_21604 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321604: The attribute 'render:idList' on a <localStyle> must have a value of data type 'string'.
RENDER_21701 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321701: A <polygon> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21702 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321702: A <polygon> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_21703 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321703: A <polygon> object may contain one and only one instance of the <listOfElements> element.
RENDER_21704 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321704: A <polygon> object may contain one and only one instance of the <listOfCurveSegments> element from the Layout package.
RENDER_21705 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321705: Apart from the general notes and annotations subobjects permitted on all SBML objects, a <listOfRenderPoints> container object may only contain <renderPoint> objects.
RENDER_21706 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321706: A <listOfRenderPoints> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21801 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321801: A <radialGradient> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21802 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321802: A <radialGradient> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_21803 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321803: A <radialGradient> object may have the optional attributes 'render:cx', 'render:cy', 'render:cz', 'render:r', 'render:fx', 'render:fy' and 'render:fz'.
RENDER_21804 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321804: The value of the attribute 'render:cx' of a <radialGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21805 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321805: The value of the attribute 'render:cy' of a <radialGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21806 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321806: The value of the attribute 'render:cz' of a <radialGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21807 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321807: The value of the attribute 'render:r' of a <radialGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21808 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321808: The value of the attribute 'render:fx' of a <radialGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21809 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321809: The value of the attribute 'render:fy' of a <radialGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21810 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321810: The value of the attribute 'render:fz' of a <radialGradient> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21901 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321901: A <rectangle> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_21902 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321902: A <rectangle> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_21903 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321903: A <rectangle> object must have the required attributes 'render:x', 'render:y', 'render:width' and 'render:height', and may have the optional attributes 'render:ratio', 'render:z', 'render:rX' and 'render:rY'.
RENDER_21904 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321904: The value of the attribute 'render:x' of a <rectangle> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21905 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321905: The value of the attribute 'render:y' of a <rectangle> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21906 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321906: The value of the attribute 'render:width' of a <rectangle> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21907 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321907: The value of the attribute 'render:height' of a <rectangle> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21908 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321908: The attribute 'render:ratio' on a <rectangle> must have a value of data type 'double'.
RENDER_21909 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321909: The value of the attribute 'render:z' of a <rectangle> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21910 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321910: The value of the attribute 'render:rX' of a <rectangle> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_21911 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1321911: The value of the attribute 'render:rY' of a <rectangle> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22001 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322001: A <renderCubicBezier> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22002 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322002: A <renderCubicBezier> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_22003 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322003: A <renderCubicBezier> object must have the required attributes 'render:basePoint1_x', 'render:basePoint1_y', 'render:basePoint2_x' and 'render:basePoint2_y', and may have the optional attributes 'render:basePoint1_z' and 'render:basePoint2_z'.
RENDER_22004 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322004: The value of the attribute 'render:basePoint1_x' of a <renderCubicBezier> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22005 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322005: The value of the attribute 'render:basePoint1_y' of a <renderCubicBezier> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22006 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322006: The value of the attribute 'render:basePoint2_x' of a <renderCubicBezier> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22007 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322007: The value of the attribute 'render:basePoint2_y' of a <renderCubicBezier> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22008 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322008: The value of the attribute 'render:basePoint1_z' of a <renderCubicBezier> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22009 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322009: The value of the attribute 'render:basePoint2_z' of a <renderCubicBezier> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22101 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322101: A <renderCurve> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22102 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322102: A <renderCurve> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_22103 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322103: A <renderCurve> object may have the optional attributes 'render:startHead' and 'render:endHead'.
RENDER_22104 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322104: A <renderCurve> object may contain one and only one instance of the <listOfRenderPoints> element.
RENDER_22105 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322105: The value of the attribute 'render:startHead' of a <renderCurve> object must be the identifier of an existing <lineEnding> object defined in the enclosing <model> object.
RENDER_22106 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322106: The value of the attribute 'render:endHead' of a <renderCurve> object must be the identifier of an existing <lineEnding> object defined in the enclosing <model> object.
RENDER_22107 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322107: The <listOfRenderPoints> subobject on a <renderCurve> object is optional, but if present, this container object must not be empty.
RENDER_22108 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322108: Apart from the general notes and annotations subobjects permitted on all SBML objects, a <listOfRenderPoints> container object may only contain <renderPoint> objects.
RENDER_22109 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322109: A <listOfRenderPoints> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22201 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322201: A <renderPoint> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22202 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322202: A <renderPoint> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_22203 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322203: A <renderPoint> object must have the required attributes 'render:x' and 'render:y', and may have the optional attribute 'render:z'.
RENDER_22204 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322204: The value of the attribute 'render:x' of a <renderPoint> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22205 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322205: The value of the attribute 'render:y' of a <renderPoint> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22206 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322206: The value of the attribute 'render:z' of a <renderPoint> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22301 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322301: A <text> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22302 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322302: A <text> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_22303 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322303: A <text> object must have the required attributes 'render:x' and 'render:y', and may have the optional attributes 'render:font-family', 'render:font-weight', 'render:font-style', 'render:text-anchor', 'render:vtext-anchor', 'render:z' and 'render:font-size'.
RENDER_22304 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322304: The value of the attribute 'render:x' of a <text> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22305 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322305: The value of the attribute 'render:y' of a <text> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22306 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322306: The attribute 'render:font-family' on a <text> must have a value of data type 'string'.
RENDER_22307 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322307: The value of the attribute 'render:font-weight' of a <text> object must conform to the syntax of SBML data type 'FontWeight' and may only take on the allowed values of 'FontWeight' defined in SBML; that is, the value must be one of the following: 'bold' or 'normal'.
RENDER_22308 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322308: The value of the attribute 'render:font-style' of a <text> object must conform to the syntax of SBML data type 'FontStyle' and may only take on the allowed values of 'FontStyle' defined in SBML; that is, the value must be one of the following: 'italic' or 'normal'.
RENDER_22309 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322309: The value of the attribute 'render:text-anchor' of a <text> object must conform to the syntax of SBML data type 'HTextAnchor' and may only take on the allowed values of 'HTextAnchor' defined in SBML; that is, the value must be one of the following: 'start', 'middle' or 'end'.
RENDER_22310 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322310: The value of the attribute 'render:vtext-anchor' of a <text> object must conform to the syntax of SBML data type 'VTextAnchor' and may only take on the allowed values of 'VTextAnchor' defined in SBML; that is, the value must be one of the following: 'top', 'middle', 'bottom' or 'baseline'.
RENDER_22311 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322311: The value of the attribute 'render:z' of a <text> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22312 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322312: The value of the attribute 'render:font-size' of a <text> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_22401 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322401: A <transformation2D> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22402 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322402: A <transformation2D> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_22501 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322501: A <transformation> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22502 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322502: A <transformation> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_22503 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322503: A <transformation> object may have the optional attributes 'render:transform' and 'render:name'.
RENDER_22504 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322504: The value of the attribute 'render:transform' of a <transformation> object must be an array of values of type 'double'.
RENDER_22505 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322505: The attribute 'render:name' on a <transformation> must have a value of data type 'string'.
RENDER_22601 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322601: A <graphicalPrimitive1D> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22602 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322602: A <graphicalPrimitive1D> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_22603 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322603: A <graphicalPrimitive1D> object may have the optional attributes 'render:id', 'render:stroke', 'render:stroke-width' and 'render:stroke-dasharray'.
RENDER_22604 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322604: The attribute 'render:stroke' on a <graphicalPrimitive1D> must have a value of data type 'string'.
RENDER_22605 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322605: The attribute 'render:stroke-width' on a <graphicalPrimitive1D> must have a value of data type 'double'.
RENDER_22606 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322606: The value of the attribute 'render:stroke-dasharray' of a <graphicalPrimitive1D> object must be an array of values of type 'unsignedint'.
RENDER_22701 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322701: A <graphicalPrimitive2D> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22702 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322702: A <graphicalPrimitive2D> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_22703 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322703: A <graphicalPrimitive2D> object may have the optional attributes 'render:fill' and 'render:fill-rule'.
RENDER_22704 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322704: The attribute 'render:fill' on a <graphicalPrimitive2D> must have a value of data type 'string'.
RENDER_22705 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322705: The value of the attribute 'render:fill-rule' of a <graphicalPrimitive2D> object must conform to the syntax of SBML data type 'FillRule' and may only take on the allowed values of 'FillRule' defined in SBML; that is, the value must be one of the following: 'nonzero' or 'evenodd'.
RENDER_22801 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322801: A <style> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22802 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322802: A <style> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_22803 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322803: A <style> object may have the optional attributes 'render:id', 'render:name', 'render:roleList' and 'render:typeList'.
RENDER_22804 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322804: A <style> object may contain one and only one instance of the RenderGroup element.
RENDER_22805 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322805: The attribute 'render:name' on a <style> must have a value of data type 'string'.
RENDER_22806 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322806: The attribute 'render:roleList' on a <style> must have a value of data type 'string'.
RENDER_22807 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322807: The attribute 'render:typeList' on a <style> must have a value of data type 'string'.
RENDER_22901 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322901: A <renderInformationBase> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22902 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322902: A <renderInformationBase> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_22903 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322903: A <renderInformationBase> object must have the required attribute 'render:id', and may have the optional attributes 'render:name', 'render:programName', 'render:programVersion', 'render:referenceRenderInformation' and 'render:backgroundColor'.
RENDER_22904 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322904: A <renderInformationBase> object may contain one and only one instance of each of the <listOfColorDefinitions,> <listOfGradientBases> and <listOfLineEndings> elements.
RENDER_22905 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322905: The attribute 'render:name' on a <renderInformationBase> must have a value of data type 'string'.
RENDER_22906 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322906: The attribute 'render:programName' on a <renderInformationBase> must have a value of data type 'string'.
RENDER_22907 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322907: The attribute 'render:programVersion' on a <renderInformationBase> must have a value of data type 'string'.
RENDER_22908 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322908: The value of the attribute 'render:referenceRenderInformation' of a <renderInformationBase> object must be the identifier of an existing <renderInformationBase> object defined in the enclosing <model> object.
RENDER_22909 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322909: The attribute 'render:backgroundColor' on a <renderInformationBase> must have a value of data type 'string'.
RENDER_22910 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322910: The <listOfColorDefinitions,> <listOfGradientBases> and <listOfLineEndings> subobjects on a <renderInformationBase> object are optional, but if present, these container objects must not be empty.
RENDER_22911 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322911: Apart from the general notes and annotations subobjects permitted on all SBML objects, a <listOfColorDefinitions> container object may only contain <colorDefinition> objects.
RENDER_22912 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322912: Apart from the general notes and annotations subobjects permitted on all SBML objects, a <listOfGradientBases> container object may only contain <gradientBase> objects.
RENDER_22913 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322913: Apart from the general notes and annotations subobjects permitted on all SBML objects, a <listOfLineEndings> container object may only contain <lineEnding> objects.
RENDER_22914 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322914: A <listOfColorDefinitions> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22915 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322915: A <listOfGradientBases> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_22916 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1322916: A <listOfLineEndings> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_23001 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323001: A <defaultValues> object may have the optional SBML Level 3 Core attributes 'metaid' and 'sboTerm'.
RENDER_23002 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323002: A <defaultValues> object may have the optional SBML Level 3 Core subobjects for notes and annotations.
RENDER_23003 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323003: A <defaultValues> object may have the optional attributes 'render:backgroundColor', 'render:spreadMethod', 'render:fill', 'render:fill-rule', 'render:stroke', 'render:stroke-width', 'render:font-family', 'render:font-weight', 'render:font-style', 'render:text-anchor', 'render:vtext-anchor', 'render:startHead', 'render:endHead', 'render:enableRotationalMapping', 'render:linearGradient_x1', 'render:linearGradient_y1', 'render:linearGradient_z1', 'render:linearGradient_x2', 'render:linearGradient_y2', 'render:linearGradient_z2', 'render:radialGradient_cx', 'render:radialGradient_cy', 'render:radialGradient_cz', 'render:radialGradient_r', 'render:radialGradient_fx', 'render:radialGradient_fy', 'render:radialGradient_fz', 'render:default_z' and 'render:font-size'.
RENDER_23004 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323004: The attribute 'render:backgroundColor' on a <defaultValues> must have a value of data type 'string'.
RENDER_23005 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323005: The value of the attribute 'render:spreadMethod' of a <defaultValues> object must conform to the syntax of SBML data type 'GradientSpreadMethod' and may only take on the allowed values of 'GradientSpreadMethod' defined in SBML; that is, the value must be one of the following: 'pad', 'reflect' or 'repeat'.
RENDER_23006 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323006: The attribute 'render:fill' on a <defaultValues> must have a value of data type 'string'.
RENDER_23007 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323007: The value of the attribute 'render:fill-rule' of a <defaultValues> object must conform to the syntax of SBML data type 'FillRule' and may only take on the allowed values of 'FillRule' defined in SBML; that is, the value must be one of the following: 'nonzero' or 'evenodd'.
RENDER_23008 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323008: The attribute 'render:stroke' on a <defaultValues> must have a value of data type 'string'.
RENDER_23009 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323009: The attribute 'render:stroke-width' on a <defaultValues> must have a value of data type 'double'.
RENDER_23010 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323010: The attribute 'render:font-family' on a <defaultValues> must have a value of data type 'string'.
RENDER_23011 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323011: The value of the attribute 'render:font-weight' of a <defaultValues> object must conform to the syntax of SBML data type 'FontWeight' and may only take on the allowed values of 'FontWeight' defined in SBML; that is, the value must be one of the following: 'bold' or 'normal'.
RENDER_23012 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323012: The value of the attribute 'render:font-style' of a <defaultValues> object must conform to the syntax of SBML data type 'FontStyle' and may only take on the allowed values of 'FontStyle' defined in SBML; that is, the value must be one of the following: 'italic' or 'normal'.
RENDER_23013 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323013: The value of the attribute 'render:text-anchor' of a <defaultValues> object must conform to the syntax of SBML data type 'HTextAnchor' and may only take on the allowed values of 'HTextAnchor' defined in SBML; that is, the value must be one of the following: 'start', 'middle' or 'end'.
RENDER_23014 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323014: The value of the attribute 'render:vtext-anchor' of a <defaultValues> object must conform to the syntax of SBML data type 'VTextAnchor' and may only take on the allowed values of 'VTextAnchor' defined in SBML; that is, the value must be one of the following: 'top', 'middle', 'bottom' or 'baseline'.
RENDER_23015 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323015: The value of the attribute 'render:startHead' of a <defaultValues> object must be the identifier of an existing <lineEnding> object defined in the enclosing <model> object.
RENDER_23016 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323016: The value of the attribute 'render:endHead' of a <defaultValues> object must be the identifier of an existing <lineEnding> object defined in the enclosing <model> object.
RENDER_23017 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323017: The attribute 'render:enableRotationalMapping' on a <defaultValues> must have a value of data type 'boolean'.
RENDER_23018 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323018: The value of the attribute 'render:linearGradient_x1' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23019 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323019: The value of the attribute 'render:linearGradient_y1' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23020 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323020: The value of the attribute 'render:linearGradient_z1' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23021 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323021: The value of the attribute 'render:linearGradient_x2' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23022 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323022: The value of the attribute 'render:linearGradient_y2' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23023 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323023: The value of the attribute 'render:linearGradient_z2' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23024 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323024: The value of the attribute 'render:radialGradient_cx' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23025 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323025: The value of the attribute 'render:radialGradient_cy' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23026 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323026: The value of the attribute 'render:radialGradient_cz' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23027 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323027: The value of the attribute 'render:radialGradient_r' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23028 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323028: The value of the attribute 'render:radialGradient_fx' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23029 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323029: The value of the attribute 'render:radialGradient_fy' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23030 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323030: The value of the attribute 'render:radialGradient_fz' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23031 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323031: The value of the attribute 'render:default_z' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23032 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323032: The value of the attribute 'render:font-size' of a <defaultValues> object must conform to the syntax of SBML data type <relAbsVector,> i.e., a string encoding optionally an absolute number followed by an optional relative number followed by a <% sign>.
RENDER_23040 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323040: The ListOfElements subobject on a RenderCurve or a Polygon object is optional, but if present, this container object must not be empty.
RENDER_23041 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323041: Apart from the general notes and annotations subobjects permitted on all SBML objects, a ListOfElements container object may only contain RenderPoint or the derived RenderCubicBezier objects.
RENDER_23042 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323042: A ListOfElements object may have the optional SBML Level 3 Core attributes metaid and sboTerm.
RENDER_23043 - Static variable in interface org.sbml.jsbml.validator.offline.factory.SBMLErrorCodes: Error code 1323043: The first element within a ListOfElements container object must be of type RenderPoint (but not of the derived RenderCubicBezier) Reference: L3V1 Render V1 Section 3.9.3
RENDER_CUBIC_BEZIER - org.sbml.jsbml.ext.render.RenderCurveSegment.Type
RENDER_LINK - Static variable in class org.sbml.jsbml.ext.render.director.RenderProcessor
RENDER_POINT - org.sbml.jsbml.ext.render.RenderCurveSegment.Type
RenderConstants - Class in org.sbml.jsbml.ext.render: Contains some constants related to the render package.
RenderConstants() - Constructor for class org.sbml.jsbml.ext.render.RenderConstants
renderCubicBezier - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
RenderCubicBezier - Class in org.sbml.jsbml.ext.render
RenderCubicBezier() - Constructor for class org.sbml.jsbml.ext.render.RenderCubicBezier: Creates an RenderCubicBezier instance
RenderCubicBezier(RenderCubicBezier) - Constructor for class org.sbml.jsbml.ext.render.RenderCubicBezier: Clone constructor
RenderCubicBezierConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the RenderCubicBezier class.
RenderCubicBezierConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RenderCubicBezierConstraints
renderCurve - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
RenderCurve - Class in org.sbml.jsbml.ext.render: Implements the curve concept from the SBML render extension.
RenderCurve() - Constructor for class org.sbml.jsbml.ext.render.RenderCurve: Creates an Curve instance
RenderCurve(RenderCurve) - Constructor for class org.sbml.jsbml.ext.render.RenderCurve: Clone constructor
RenderCurveConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the RenderCurve class.
RenderCurveConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RenderCurveConstraints
RenderCurveSegment - Class in org.sbml.jsbml.ext.render: Parent class to RenderPoint and RenderCubicBezier.
RenderCurveSegment() - Constructor for class org.sbml.jsbml.ext.render.RenderCurveSegment: Creates a new RenderCurveSegment instance.
RenderCurveSegment(int, int) - Constructor for class org.sbml.jsbml.ext.render.RenderCurveSegment: Creates a new RenderCurveSegment instance.
RenderCurveSegment(RenderCurveSegment) - Constructor for class org.sbml.jsbml.ext.render.RenderCurveSegment: Creates a new RenderCurveSegment instance cloned from the given RenderCurveSegment.
RenderCurveSegment.Type - Enum in org.sbml.jsbml.ext.render
RenderGraphicalObjectPlugin - Class in org.sbml.jsbml.ext.render: Extends the GraphicalObject class with an extra attribute.
RenderGraphicalObjectPlugin(GraphicalObject) - Constructor for class org.sbml.jsbml.ext.render.RenderGraphicalObjectPlugin: Creates a new RenderGraphicalObjectPlugin instance.
RenderGraphicalObjectPlugin(RenderGraphicalObjectPlugin) - Constructor for class org.sbml.jsbml.ext.render.RenderGraphicalObjectPlugin: Clone constructor
RenderGraphicalObjectPluginConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the RenderGraphicalObjectPlugin class.
RenderGraphicalObjectPluginConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RenderGraphicalObjectPluginConstraints
RenderGroup - Class in org.sbml.jsbml.ext.render: The RenderGroup class from the SBML render extension is used to group graphical primitives together to create composite representations from simple primitives.
RenderGroup() - Constructor for class org.sbml.jsbml.ext.render.RenderGroup: Creates an Group instance
RenderGroup(int, int) - Constructor for class org.sbml.jsbml.ext.render.RenderGroup: Creates a Group instance with a level and version.
RenderGroup(String) - Constructor for class org.sbml.jsbml.ext.render.RenderGroup: Creates a Group instance with an id.
RenderGroup(String, int, int) - Constructor for class org.sbml.jsbml.ext.render.RenderGroup: Creates a Group instance with an id, level, and version.
RenderGroup(String, String, int, int) - Constructor for class org.sbml.jsbml.ext.render.RenderGroup: Creates a Group instance with an id, name, level, and version.
RenderGroup(RenderGroup) - Constructor for class org.sbml.jsbml.ext.render.RenderGroup: Clone constructor
RenderGroupConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the RenderGroup class.
RenderGroupConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RenderGroupConstraints
renderInformation - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
RenderInformationBase - Class in org.sbml.jsbml.ext.render
RenderInformationBase() - Constructor for class org.sbml.jsbml.ext.render.RenderInformationBase: Creates an RenderInformationBase instance
RenderInformationBase(int, int) - Constructor for class org.sbml.jsbml.ext.render.RenderInformationBase: Creates a RenderInformationBase instance with a level and version.
RenderInformationBase(String) - Constructor for class org.sbml.jsbml.ext.render.RenderInformationBase: Creates a RenderInformationBase instance with an id.
RenderInformationBase(String, int, int) - Constructor for class org.sbml.jsbml.ext.render.RenderInformationBase: Creates a RenderInformationBase instance with an id, level, and version.
RenderInformationBase(String, String, int, int) - Constructor for class org.sbml.jsbml.ext.render.RenderInformationBase: Creates a RenderInformationBase instance with an id, name, level, and version.
RenderInformationBase(RenderInformationBase) - Constructor for class org.sbml.jsbml.ext.render.RenderInformationBase: Clone constructor
RenderInformationBaseConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the RenderInformationBase class.
RenderInformationBaseConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RenderInformationBaseConstraints
RenderLayoutPlugin - Class in org.sbml.jsbml.ext.render
RenderLayoutPlugin(Layout) - Constructor for class org.sbml.jsbml.ext.render.RenderLayoutPlugin: Creates a RenderLayoutPlugin instance
RenderLayoutPlugin(RenderLayoutPlugin) - Constructor for class org.sbml.jsbml.ext.render.RenderLayoutPlugin: Clone constructor
RenderLayoutPluginConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the RenderLayoutPlugin class.
RenderLayoutPluginConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RenderLayoutPluginConstraints
RenderListOfLayoutsPlugin - Class in org.sbml.jsbml.ext.render
RenderListOfLayoutsPlugin(RenderListOfLayoutsPlugin) - Constructor for class org.sbml.jsbml.ext.render.RenderListOfLayoutsPlugin: Clone constructor
RenderListOfLayoutsPlugin(ListOf<Layout>) - Constructor for class org.sbml.jsbml.ext.render.RenderListOfLayoutsPlugin: Creates an RenderModelPlugin instance
RenderListOfLayoutsPluginConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the RenderListOfLayoutsPlugin class.
RenderListOfLayoutsPluginConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RenderListOfLayoutsPluginConstraints
RenderParser - Class in org.sbml.jsbml.xml.parsers
RenderParser() - Constructor for class org.sbml.jsbml.xml.parsers.RenderParser
renderPoint - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
RenderPoint - Class in org.sbml.jsbml.ext.render
RenderPoint() - Constructor for class org.sbml.jsbml.ext.render.RenderPoint: Creates a new RenderPoint instance
RenderPoint(RenderPoint) - Constructor for class org.sbml.jsbml.ext.render.RenderPoint: Clone constructor
RenderPointConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the RenderPoint class.
RenderPointConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RenderPointConstraints
RenderProcessor - Class in org.sbml.jsbml.ext.render.director: A currently very preliminary class with inaccurate interpretation of rendering information.
RenderProcessor() - Constructor for class org.sbml.jsbml.ext.render.director.RenderProcessor
reorder(UnitDefinition) - Static method in class org.sbml.jsbml.UnitDefinition: Orders alphabetically the Unit objects within the UnitDefinition.listOfUnits of a UnitDefinition.
REPEAT - org.sbml.jsbml.ext.render.GradientBase.Spread: the gradient pattern is repeated from start to end over and over again.
replaceArgument(String, ASTNode) - Method in class org.sbml.jsbml.ASTNode: Replaces occurrences of a name within this ASTNode with the name/value/formula represented by the second argument ASTNode, e.g., if the formula in this ASTNode is x + y; bvar is x and arg is an ASTNode representing the real value 3 ReplaceArgument substitutes 3 for x within this ASTNode.
replaceArgument(String, ASTNode2) - Method in class org.sbml.jsbml.math.ASTLambdaFunctionNode: Replaces occurrences of a name within this ASTLambdaFunctionNode with the name/value/formula represented by the second argument ASTNode2, e.g., if the formula in this ASTLambdaFunctionNode is x + y; bvar is x and arg is an ASTLambdaFunctionNode representing the real value 3 ReplaceArgument substitutes 3 for x within this ASTLambdaFunctionNode.
replaceChild(int, ASTNode) - Method in class org.sbml.jsbml.ASTNode: Replaces the n^th child of this ASTNode with the given ASTNode.
replaceChild(int, ASTNode2) - Method in class org.sbml.jsbml.math.ASTFunction: Replaces the n^th child of this ASTNode2 with the given ASTNode2.
replacedBy - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
ReplacedBy - Class in org.sbml.jsbml.ext.comp: Indicates when the parent object is to be replaced by another object.
ReplacedBy() - Constructor for class org.sbml.jsbml.ext.comp.ReplacedBy: Creates a ReplacedBy instance
ReplacedBy(int, int) - Constructor for class org.sbml.jsbml.ext.comp.ReplacedBy: Creates a ReplacedBy instance with a level and version.
ReplacedBy(ReplacedBy) - Constructor for class org.sbml.jsbml.ext.comp.ReplacedBy: Clone constructor
ReplacedByConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the ReplacedBy class.
ReplacedByConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.ReplacedByConstraints
replacedElement - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
ReplacedElement - Class in org.sbml.jsbml.ext.comp: Points to a submodel object that should be considered "replaced".
ReplacedElement() - Constructor for class org.sbml.jsbml.ext.comp.ReplacedElement: Creates an ReplacedElement instance
ReplacedElement(int, int) - Constructor for class org.sbml.jsbml.ext.comp.ReplacedElement: Creates a ReplacedElement instance with a level and version
ReplacedElement(ReplacedElement) - Constructor for class org.sbml.jsbml.ext.comp.ReplacedElement: Clone constructor
ReplacedElementConstraints - Class in org.sbml.jsbml.validator.offline.constraints: Defines validation rules (as ValidationFunction instances) for the ReplacedElement class.
ReplacedElementConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.ReplacedElementConstraints
replaceTopLevelAnnotationElement(String) - Method in class org.sbml.jsbml.AbstractSBase
replaceTopLevelAnnotationElement(String) - Method in interface org.sbml.jsbml.SBase: Replaces the top-level element of this SBML object with same name as given annotation subelement by the given one.
replaceTopLevelAnnotationElement(XMLNode) - Method in class org.sbml.jsbml.AbstractSBase
replaceTopLevelAnnotationElement(XMLNode) - Method in interface org.sbml.jsbml.SBase: Replaces the top-level element of this SBML object with same name as given annotation subelement by the given one.
representationType - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
RepresentationType - Enum in org.sbml.jsbml.ext.multi: The RepresentationType enumeration is used in the extension of the ci element.
ReqConstants - Class in org.sbml.jsbml.ext.req: Contains some constants related to the req package.
ReqConstants() - Constructor for class org.sbml.jsbml.ext.req.ReqConstants
ReqParser - Class in org.sbml.jsbml.xml.parsers: A ReqParser is used to parse the req extension package elements and attributes.
ReqParser() - Constructor for class org.sbml.jsbml.xml.parsers.ReqParser
ReqSBasePlugin - Class in org.sbml.jsbml.ext.req: Represents the extended SBase as define in the req package.
ReqSBasePlugin() - Constructor for class org.sbml.jsbml.ext.req.ReqSBasePlugin: Creates an ReqSBasePlugin instance
ReqSBasePlugin(ReqSBasePlugin) - Constructor for class org.sbml.jsbml.ext.req.ReqSBasePlugin: Clone constructor
ReqSBasePlugin(SBase) - Constructor for class org.sbml.jsbml.ext.req.ReqSBasePlugin: Creates a ReqSBasePlugin instance associated with the given SBase.
reset() - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
reset() - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
reset() - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler: Deprecated.

Allows to re-use this object to compile another ASTNode.
Resource - Class in org.sbml.jsbml.resources: Dummy class that just loads resource files if required.
ResourceManager - Class in org.sbml.jsbml.util: A ResourceManager avoids loading instances of ResourceBundle multiple times by keeping these in a Map data structure.
ResourceManager() - Constructor for class org.sbml.jsbml.util.ResourceManager
resultLevel - Static variable in class org.sbml.jsbml.ext.qual.QualConstants
retainAll(Collection<?>) - Method in class org.sbml.jsbml.ListOf
reverseTransformation - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
reversible - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
REVERSIBLE_REACTION_ARROW - Static variable in class org.sbml.jsbml.math.compiler.HTMLFormula: HTML code for the reversible reaction arrow whose upper side is directed to the right “⇌”.
REVERSIBLE_REACTION_ARROW - Static variable in class org.sbml.jsbml.util.compilers.HTMLFormula: HTML code for the reversible reaction arrow whose upper side is directed to the right “⇌”.
ReversibleConsumption<T> - Interface in org.sbml.jsbml.ext.render.director: Interface for all reversible consumption processes.
RIGHT - org.sbml.jsbml.ext.render.director.SimpleLayoutAlgorithm.RelativePosition
RIGHT_ARROW - Static variable in class org.sbml.jsbml.math.compiler.HTMLFormula: HTML code for the right arrow “→”.
RIGHT_ARROW - Static variable in class org.sbml.jsbml.util.compilers.HTMLFormula: HTML code for the right arrow “→”.
RIGHT_BRACES - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants: RegularExpression Id.
RIGHT_BRACES - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserConstants: RegularExpression Id.
RIGHT_BRACES - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
RIGHT_BRACES - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3Constants: RegularExpression Id.
RIGHT_BRACES - Static variable in interface org.sbml.jsbml.text.parser.CobraFormulaParserConstants: RegularExpression Id.
RIGHT_BRACES - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants: RegularExpression Id.
RIGHT_BRACES - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserConstants: RegularExpression Id.
RIGHT_BRACES - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
RIGHT_BRACES - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3Constants: RegularExpression Id.
RIGHT_BRACKET - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants: RegularExpression Id.
RIGHT_BRACKET - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserConstants: RegularExpression Id.
RIGHT_BRACKET - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
RIGHT_BRACKET - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3Constants: RegularExpression Id.
RIGHT_BRACKET - Static variable in interface org.sbml.jsbml.text.parser.CobraFormulaParserConstants: RegularExpression Id.
RIGHT_BRACKET - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants: RegularExpression Id.
RIGHT_BRACKET - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserConstants: RegularExpression Id.
RIGHT_BRACKET - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants: RegularExpression Id.
RIGHT_BRACKET - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3Constants: RegularExpression Id.
rightBrace - Static variable in class org.sbml.jsbml.math.compiler.LaTeXCompiler
rightBrace - Static variable in class org.sbml.jsbml.util.compilers.LaTeXCompiler
rightChild - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants: Introduced to FBC in version 2: The right child of a logical association rule.
rightQuotationMark - Static variable in class org.sbml.jsbml.math.compiler.LaTeXCompiler: An closing quotation mark.
rightQuotationMark - Static variable in class org.sbml.jsbml.util.compilers.LaTeXCompiler: An closing quotation mark.
rightTriangle - org.sbml.jsbml.ext.spatial.PrimitiveKind: rightTriangle
Robin_inwardNormalGradientCoefficient - org.sbml.jsbml.ext.spatial.BoundaryConditionKind: Robin inward normal gradient coefficient
Robin_sum - org.sbml.jsbml.ext.spatial.BoundaryConditionKind: Robin sum
Robin_valueCoefficient - org.sbml.jsbml.ext.spatial.BoundaryConditionKind: Robin value coefficient
role - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
roleList - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
root(double, double) - Static method in class org.sbml.jsbml.util.Maths: Computes the rootExponent-th root of the radiant This method originally always used Math.pow(double, double) with 1/root exponent (if root exponent !
root(double, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
root(double, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
root(double, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
root(double, ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler
root(double, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
root(double, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
root(double, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
root(double, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LibSBMLFormulaCompiler
root(double, ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler: Deprecated.
root(double, ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
root(double, ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler
root(double, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
root(double, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
root(double, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
root(double, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LibSBMLFormulaCompiler
root(double, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
root(Object, Object) - Static method in class org.sbml.jsbml.math.compiler.FormulaCompiler: Returns the exponent-th root of the basis as StringBuffer.
root(Object, Object) - Static method in class org.sbml.jsbml.util.compilers.FormulaCompiler: Returns the exponent-th root of the basis as StringBuffer.
root(ASTNode, ASTNode) - Static method in class org.sbml.jsbml.ASTNode: Creates a root ASTNode.
root(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
root(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
root(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
root(ASTNode, ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler
root(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
root(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
root(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
root(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LibSBMLFormulaCompiler
root(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler: Deprecated.
root(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
root(ASTNode, ASTNode) - Method in class org.sbml.jsbml.validator.offline.constraints.helper.ValidationUnitsCompiler
root(ASTNode2, ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory: Creates a root of type ASTNode2.
root(ASTNode2, ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler
root(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
root(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
root(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
root(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LibSBMLFormulaCompiler
root(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
rotateAngleInRadians - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
rotateX - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
rotateY - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
rotateZ - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
Rule - Class in org.sbml.jsbml: The base class for the AlgebraicRule, RateRule, AssignmentRule.
Rule() - Constructor for class org.sbml.jsbml.Rule: Creates a Rule instance.
Rule(int, int) - Constructor for class org.sbml.jsbml.Rule: Creates a Rule instance from a level and version.
Rule(ASTNode, int, int) - Constructor for class org.sbml.jsbml.Rule: Creates a Rule instance from an id, level and version.
Rule(Rule) - Constructor for class org.sbml.jsbml.Rule: Creates a new Rule instance from a given Rule.
RuleConstraints - Class in org.sbml.jsbml.validator.offline.constraints
RuleConstraints() - Constructor for class org.sbml.jsbml.validator.offline.constraints.RuleConstraints
run() - Method in class org.sbml.jsbml.ext.render.director.LayoutDirector
rx - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
ry - Static variable in class org.sbml.jsbml.ext.render.RenderConstants

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