Package org.sbml.jsbml.ext.qual

Provides classes for the Qualitative Models package.

Since:

1.0

Class Summary

Class	Description
FunctionTerm	Each FunctionTerm is also associated with a result and in addition to a Boolean function inside a Math element that can be used to set the conditions under which this term is selected.
Input	Each Input refers to a QualitativeSpecies that participates in the corresponding Transition.
Output	Each Output refers to a QualitativeSpecies that participates in (is affected by) the corresponding Transition.
QualConstants	Contains some constants related to the qual package.
QualitativeModel	Deprecated. use QualModelPlugin instead.
QualitativeSpecies	Similarly to the Species in SBML, the components of qualitative models refer to pools of entities that are considered indistinguishable and are each located in a specific Compartment.
QualModelPlugin	The QualModelPlugin adds two lists, one for holding QualitativeSpecies and the other for holding Transitions.
Transition	A Transition defines the changes in level associated with the QualitativeSpecies that occur when a Transition is enabled.

Enum Summary

Enum	Description
InputTransitionEffect	The transitionInputEffect is an enumeration of values used to indicate the effect of an Input Transition within the system.
OutputTransitionEffect	The transitionOutputEffect is an enumeration of values used to indicate the effect of an Output Transition within the system.
QualList
Sign	The sign is an enumeration of values used to indicate direction of an Input within the system.