Here is a list of all functions with links to the classes they belong to:

- c -

• CallbackRegistry() : CallbackRegistry
• canonicalize() : ASTNode
• changeErrorSeverity() : XMLErrorLog
• checkCompatibility() : CobraToFbcConverter
• checkConsistency() : SBMLDocument, SBMLInternalValidator
• checkConsistencyWithStrictUnits() : SBMLDocument
• checkInternalConsistency() : SBMLDocument, SBMLInternalValidator
• checkL1Compatibility() : SBMLDocument, SBMLInternalValidator
• checkL2v1Compatibility() : SBMLDocument, SBMLInternalValidator
• checkL2v2Compatibility() : SBMLDocument, SBMLInternalValidator
• checkL2v3Compatibility() : SBMLDocument, SBMLInternalValidator
• checkL2v4Compatibility() : SBMLDocument, SBMLInternalValidator
• checkL2v5Compatibility() : SBMLDocument, SBMLInternalValidator
• checkL3v1Compatibility() : SBMLDocument, SBMLInternalValidator
• checkL3v2Compatibility() : SBMLDocument, SBMLInternalValidator
• checkTerm() : SBO
• clear() : ListOf, XMLAttributes, XMLNamespaces
• clearAdditionalDirs() : SBMLFileResolver
• clearAssociations() : Association
• clearAttributes() : XMLToken
• clearCallbacks() : CallbackRegistry
• clearDashes() : GraphicalPrimitive1D
• clearDefinitions() : DefinitionURLRegistry
• clearFailures() : SBMLValidator, Validator
• clearInstantiation() : Submodel
• clearLog() : XMLErrorLog
• clearNamespaces() : XMLToken
• clearPlugins() : ASTNode
• clearReferencedElement() : SBaseRef
• clearReplacedElements() : CompSBasePlugin
• clearStoredURIDocuments() : CompSBMLDocumentPlugin
• clone() : AdjacentDomains, AdvectionCoefficient, AlgebraicRule, AnalyticGeometry, AnalyticVolume, AssignmentRule, Association, BindingSiteSpeciesType, Boundary, BoundaryCondition, BoundingBox, CobraToFbcConverter, ColorDefinition, Compartment, CompartmentGlyph, CompartmentMapping, CompartmentReference, CompartmentType, CompExtension, CompFlatteningConverter, CompModelPlugin, CompSBasePlugin, CompSBMLDocumentPlugin, Constraint, ConversionOption, ConversionProperties, CoordinateComponent, CSGeometry, CSGHomogeneousTransformation, CSGNode, CSGObject, CSGPrimitive, CSGRotation, CSGScale, CSGSetOperator, CSGTransformation, CSGTranslation, CubicBezier, Curve, CVTerm, Date, DefaultTerm, DefaultValues, Delay, Deletion, DiffusionCoefficient, Dimensions, DistribASTPlugin, DistribBase, DistribExtension, DistribSBasePlugin, DistribSBMLDocumentPlugin, Domain, DomainType, Ellipse, Event, EventAssignment, ExpressionAnalyser, ExternalModelDefinition, FbcAnd, FbcAssociation, FbcExtension, FbcModelPlugin, FbcOr, FbcReactionPlugin, FbcSBasePlugin, FbcSBMLDocumentPlugin, FbcSpeciesPlugin, FbcToCobraConverter, FbcV1ToV2Converter, FbcV2ToV1Converter, FluxBound, FluxObjective, FunctionDefinition, FunctionTerm, GeneAssociation, GeneProduct, GeneProductAssociation, GeneProductRef, GeneralGlyph, Geometry, GeometryDefinition, GlobalRenderInformation, GlobalStyle, GradientBase, GradientStop, GraphicalObject, GraphicalPrimitive1D, GraphicalPrimitive2D, Group, GroupsExtension, GroupsModelPlugin, GroupsSBMLDocumentPlugin, Image, InitialAssignment, Input, InSpeciesTypeBond, InteriorPoint, IntraSpeciesReaction, KeyValuePair, KineticLaw, Layout, LayoutExtension, LayoutModelPlugin, LayoutSBMLDocumentPlugin, LayoutSpeciesReferencePlugin, LinearGradient, LineEnding, LineSegment, ListOf, ListOfAdjacentDomains, ListOfAnalyticVolumes, ListOfColorDefinitions, ListOfCompartmentGlyphs, ListOfCompartmentReferences, ListOfCompartments, ListOfCompartmentTypes, ListOfConstraints, ListOfCoordinateComponents, ListOfCSGNodes, ListOfCSGObjects, ListOfCurveElements, ListOfDeletions, ListOfDomains, ListOfDomainTypes, ListOfDrawables, ListOfEventAssignments, ListOfEvents, ListOfExternalModelDefinitions, ListOfFbcAssociations, ListOfFluxBounds, ListOfFluxObjectives, ListOfFunctionDefinitions, ListOfFunctionTerms, ListOfGeneAssociations, ListOfGeneProducts, ListOfGeometryDefinitions, ListOfGlobalRenderInformation, ListOfGlobalStyles, ListOfGradientDefinitions, ListOfGradientStops, ListOfGraphicalObjects, ListOfGroups, ListOfInitialAssignments, ListOfInputs, ListOfInSpeciesTypeBonds, ListOfInteriorPoints, ListOfKeyValuePairs, ListOfLayouts, ListOfLineEndings, ListOfLineSegments, ListOfLocalParameters, ListOfLocalRenderInformation, ListOfLocalStyles, ListOfMembers, ListOfModelDefinitions, ListOfMultiSpeciesTypes, ListOfObjectives, ListOfOrdinalMappings, ListOfOutputs, ListOfOutwardBindingSites, ListOfParameters, ListOfParametricObjects, ListOfPorts, ListOfPossibleSpeciesFeatureValues, ListOfQualitativeSpecies, ListOfReactionGlyphs, ListOfReactions, ListOfReferenceGlyphs, ListOfReplacedElements, ListOfRules, ListOfSampledFields, ListOfSampledVolumes, ListOfSpecies, ListOfSpeciesFeatures, ListOfSpeciesFeatureTypes, ListOfSpeciesFeatureValues, ListOfSpeciesGlyphs, ListOfSpeciesReferenceGlyphs, ListOfSpeciesReferences, ListOfSpeciesTypeComponentIndexes, ListOfSpeciesTypeComponentMapInProducts, ListOfSpeciesTypeInstances, ListOfSpeciesTypes, ListOfSubmodels, ListOfTextGlyphs, ListOfTransitions, ListOfUncertainties, ListOfUncertParameters, ListOfUnitDefinitions, ListOfUnits, ListOfUserDefinedConstraintComponents, ListOfUserDefinedConstraints, LocalParameter, LocalRenderInformation, LocalStyle, Member, MixedGeometry, ModelCreator, ModelDefinition, ModelHistory, ModifierSpeciesReference, MultiASTPlugin, MultiCompartmentPlugin, MultiExtension, MultiListOfReactionsPlugin, MultiModelPlugin, MultiSBMLDocumentPlugin, MultiSimpleSpeciesReferencePlugin, MultiSpeciesPlugin, MultiSpeciesReferencePlugin, MultiSpeciesType, Objective, OrdinalMapping, Output, OutwardBindingSite, Parameter, ParametricGeometry, ParametricObject, Point, Polygon, Port, PossibleSpeciesFeatureValue, Priority, QualExtension, QualitativeSpecies, QualSBMLDocumentPlugin, RadialGradient, RateRule, Reaction, ReactionGlyph, Rectangle, ReferenceGlyph, RelAbsVector, RenderCubicBezier, RenderCurve, RenderExtension, RenderGraphicalObjectPlugin, RenderGroup, RenderInformationBase, RenderLayoutConverter, RenderLayoutPlugin, RenderListOfLayoutsPlugin, RenderPoint, RenderSBMLDocumentPlugin, ReplacedBy, ReplacedElement, Rule, SampledField, SampledFieldGeometry, SampledVolume, SBase, SBaseExtensionPoint, SBasePlugin, SBasePluginCreator< SBasePluginType, SBMLExtensionType >, SBasePluginCreatorBase, SBaseRef, SBMLConverter, SBMLDocument, SBMLDocumentPlugin, SBMLExtension, SBMLExtensionNamespaces< SBMLExtensionType >, SBMLFileResolver, SBMLFunctionDefinitionConverter, SBMLIdConverter, SBMLInferUnitsConverter, SBMLInitialAssignmentConverter, SBMLInternalValidator, SBMLLevel1Version1Converter, SBMLLevelVersionConverter, SBMLLocalParameterConverter, SBMLNamespaces, SBMLRateOfConverter, SBMLRateRuleConverter, SBMLReactionConverter, SBMLResolver, SBMLRuleConverter, SBMLStripPackageConverter, SBMLUnitsConverter, SBMLUri, SBMLValidator, SpatialCompartmentPlugin, SpatialExtension, SpatialModelPlugin, SpatialParameterPlugin, SpatialPoints, SpatialReactionPlugin, SpatialSBMLDocumentPlugin, SpatialSpeciesPlugin, SpatialSymbolReference, Species, SpeciesFeature, SpeciesFeatureType, SpeciesFeatureValue, SpeciesGlyph, SpeciesReference, SpeciesReferenceGlyph, SpeciesType, SpeciesTypeComponentIndex, SpeciesTypeComponentMapInProduct, SpeciesTypeInstance, StoichiometryMath, Style, SubListOfSpeciesFeatures, Submodel, Text, TextGlyph, Transformation2D, Transformation, TransformationComponent, Transition, Trigger, Uncertainty, UncertParameter, UncertSpan, Unit, UnitDefinition, UserDefinedConstraint, UserDefinedConstraintComponent, XMLAttributes, XMLNamespaces, XMLNode, XMLToken, XMLTriple
• CobraToFbcConverter() : CobraToFbcConverter
• collectDeletions() : SBaseRef
• collectDeletionsAndDeleteSome() : CompModelPlugin
• collectRenameAndConvertReplacements() : CompModelPlugin
• ColorDefinition() : ColorDefinition
• combine() : UnitDefinition
• combineNumbers() : ASTNode
• Compartment() : Compartment
• CompartmentGlyph() : CompartmentGlyph
• CompartmentMapping() : CompartmentMapping
• CompartmentReference() : CompartmentReference
• CompartmentType() : CompartmentType
• CompBase() : CompBase
• CompExtension() : CompExtension
• CompFlatteningConverter() : CompFlatteningConverter
• CompModelPlugin() : CompModelPlugin
• compress() : ParametricObject, SampledField, SpatialPoints
• CompSBasePlugin() : CompSBasePlugin
• CompSBMLDocumentPlugin() : CompSBMLDocumentPlugin
• CompValidator() : CompValidator
• Constraint() : Constraint
• contains() : XMLErrorLog
• containsChild() : XMLInputStream
• containsUndeclaredUnits() : Delay, EventAssignment, InitialAssignment, KineticLaw, Rule, StoichiometryMath
• containsUri() : XMLNamespaces
• ConversionOption() : ConversionOption
• ConversionProperties() : ConversionProperties
• convert() : CobraToFbcConverter, CompFlatteningConverter, FbcToCobraConverter, FbcV1ToV2Converter, FbcV2ToV1Converter, RenderLayoutConverter, SBMLConverter, SBMLDocument, SBMLFunctionDefinitionConverter, SBMLIdConverter, SBMLInferUnitsConverter, SBMLInitialAssignmentConverter, SBMLLevel1Version1Converter, SBMLLevelVersionConverter, SBMLLocalParameterConverter, SBMLRateOfConverter, SBMLRateRuleConverter, SBMLReactionConverter, SBMLRuleConverter, SBMLStripPackageConverter, SBMLUnitsConverter
• convertCSymbols() : Submodel
• convertRootToPower() : ASTNode
• convertStringToXMLNode() : XMLNode
• convertTimeAndExtent() : Submodel
• convertTimeAndExtentWith() : Submodel
• convertToSI() : Unit, UnitDefinition
• convertXMLNodeToString() : XMLNode
• CoordinateComponent() : CoordinateComponent
• copyInformationToNestedLists() : GroupsModelPlugin
• countIf() : List
• createAdditionalGraphicalObject() : Layout
• createAdjacentDomains() : Geometry, ListOfAdjacentDomains
• createAdvectionCoefficient() : SpatialParameterPlugin
• createAnalyticGeometry() : Geometry, ListOfGeometryDefinitions, MixedGeometry
• createAnalyticVolume() : AnalyticGeometry, ListOfAnalyticVolumes
• createAnd() : Association, FbcAnd, FbcOr, GeneProductAssociation, ListOfFbcAssociations
• createAnnotation() : RDFAnnotationParser
• createAssociation() : GeneAssociation
• createBindingSiteSpeciesType() : MultiModelPlugin
• createBoundaryCondition() : SpatialParameterPlugin
• createBoundaryMax() : CoordinateComponent
• createBoundaryMin() : CoordinateComponent
• createBoundingBox() : LineEnding
• createColorDefinition() : ListOfColorDefinitions, RenderInformationBase
• createCompartmentGlyph() : Layout
• createCompartmentMapping() : SpatialCompartmentPlugin
• createCompartmentReference() : MultiCompartmentPlugin
• createCoordinateComponent() : Geometry, ListOfCoordinateComponents
• createCSGeometry() : Geometry, ListOfGeometryDefinitions, MixedGeometry
• createCSGHomogeneousTransformation() : CSGObject, CSGSetOperator, CSGTransformation, ListOfCSGNodes
• createCSGObject() : CSGeometry, ListOfCSGObjects
• createCSGPrimitive() : CSGObject, CSGSetOperator, CSGTransformation, ListOfCSGNodes
• createCSGRotation() : CSGObject, CSGSetOperator, CSGTransformation, ListOfCSGNodes
• createCSGScale() : CSGObject, CSGSetOperator, CSGTransformation, ListOfCSGNodes
• createCSGSetOperator() : CSGObject, CSGSetOperator, CSGTransformation, ListOfCSGNodes
• createCSGTranslation() : CSGObject, CSGSetOperator, CSGTransformation, ListOfCSGNodes
• createCubicBezier() : Curve, GeneralGlyph, Layout, ListOfCurveElements, Polygon, ReactionGlyph, ReferenceGlyph, RenderCurve, SpeciesReferenceGlyph
• createCurve() : ListOfDrawables, RenderGroup
• createCVTerms() : RDFAnnotationParser
• createDefaultTerm() : ListOfFunctionTerms, Transition
• createDefaultValues() : ListOfGlobalRenderInformation, ListOfLocalRenderInformation
• createDelay() : Event
• createDeletion() : Submodel
• createDiffusionCoefficient() : SpatialParameterPlugin
• createDomain() : Geometry, ListOfDomains
• createDomainType() : Geometry, ListOfDomainTypes
• createEllipse() : ListOfDrawables, RenderGroup
• createEventAssignment() : Event
• createExternalModelDefinition() : CompSBMLDocumentPlugin
• createFluxBound() : FbcModelPlugin
• createFluxObjective() : ListOfFluxObjectives, Objective
• createForwardTransformation() : CSGHomogeneousTransformation
• createFunctionTerm() : Transition
• createGene() : Association
• createGeneAssociation() : FbcModelPlugin
• createGeneProduct() : FbcModelPlugin, ListOfGeneProducts
• createGeneProductAssociation() : FbcReactionPlugin
• createGeneProductRef() : FbcAnd, FbcOr, GeneProductAssociation, ListOfFbcAssociations
• createGeneralGlyph() : Layout
• createGeometry() : SpatialModelPlugin
• createGlobalRenderInformation() : ListOfGlobalRenderInformation, RenderListOfLayoutsPlugin
• createGlobalStyle() : GlobalRenderInformation, ListOfGlobalStyles
• createGradientStop() : GradientBase, ListOfGradientStops
• createGroup() : GroupsModelPlugin, LineEnding, ListOfDrawables, ListOfGroups, RenderGroup, Style
• createIdString() : LocalStyle
• createImage() : ListOfDrawables, RenderGroup
• createInput() : Transition
• createInSpeciesTypeBond() : MultiSpeciesType
• createInteriorPoint() : Domain, ListOfInteriorPoints
• createIntraSpeciesReaction() : MultiModelPlugin
• createKeyValuePair() : FbcSBasePlugin, ListOfKeyValuePairs
• createKineticLaw() : Reaction
• createLayout() : LayoutModelPlugin
• createLinearGradient() : ListOfGradientDefinitions
• createLinearGradientDefinition() : RenderInformationBase
• createLineEnding() : ListOfDrawables, ListOfLineEndings, RenderGroup, RenderInformationBase
• createLineSegment() : Curve, GeneralGlyph, Layout, ReactionGlyph, ReferenceGlyph, SpeciesReferenceGlyph
• createListOfReplacedElements() : CompSBasePlugin
• createLocalParameter() : KineticLaw
• createLocalRenderInformation() : ListOfLocalRenderInformation, RenderLayoutPlugin
• createLocalStyle() : ListOfLocalStyles, LocalRenderInformation
• createMember() : Group, ListOfMembers
• createMixedGeometry() : Geometry, ListOfGeometryDefinitions, MixedGeometry
• createModel() : SBMLDocument
• createModelDefinition() : CompSBMLDocumentPlugin
• createModifier() : Reaction
• createMultiSpeciesType() : MultiModelPlugin
• createNewConversionFactor() : Submodel
• createNonBinaryTree() : ASTNode
• createObject() : Transition
• createObjective() : FbcModelPlugin, ListOfObjectives
• createOr() : Association, FbcAnd, FbcOr, GeneProductAssociation, ListOfFbcAssociations
• createOrdinalMapping() : ListOfOrdinalMappings, MixedGeometry
• createOutput() : Transition
• createOutwardBindingSite() : MultiSpeciesPlugin
• createParameter() : KineticLaw
• createParametricGeometry() : Geometry, ListOfGeometryDefinitions, MixedGeometry
• createParametricObject() : ListOfParametricObjects, ParametricGeometry
• createPlugin() : SBasePluginCreator< SBasePluginType, SBMLExtensionType >, SBasePluginCreatorBase
• createPoint() : Polygon, RenderCurve
• createPolygon() : ListOfDrawables, RenderGroup
• createPort() : CompModelPlugin
• createPossibleSpeciesFeatureValue() : SpeciesFeatureType
• createPriority() : Event
• createProduct() : Reaction
• createRadialGradient() : ListOfGradientDefinitions
• createRadialGradientDefinition() : RenderInformationBase
• createRateRule() : SBMLReactionConverter
• createRateRuleMathForSpecies() : SBMLReactionConverter
• createRDFAnnotation() : RDFAnnotationParser
• createRDFDescription() : RDFAnnotationParser
• createReactant() : Reaction
• createReactionGlyph() : Layout
• createRectangle() : ListOfDrawables, RenderGroup
• createReferenceGlyph() : GeneralGlyph
• createReplacedBy() : CompSBasePlugin
• createReplacedElement() : CompSBasePlugin
• createRoleString() : Style
• createSampledField() : Geometry, ListOfSampledFields
• createSampledFieldGeometry() : Geometry, ListOfGeometryDefinitions, MixedGeometry
• createSampledVolume() : ListOfSampledVolumes, SampledFieldGeometry
• createSBaseRef() : SBaseRef
• createSpatialPoints() : ParametricGeometry
• createSpatialSymbolReference() : SpatialParameterPlugin
• createSpeciesFeature() : MultiSpeciesPlugin, SubListOfSpeciesFeatures
• createSpeciesFeatureType() : MultiSpeciesType
• createSpeciesFeatureValue() : SpeciesFeature
• createSpeciesGlyph() : Layout
• createSpeciesReferenceGlyph() : Layout, ReactionGlyph
• createSpeciesTypeComponentIndex() : MultiSpeciesType
• createSpeciesTypeComponentMapInProduct() : MultiSpeciesReferencePlugin
• createSpeciesTypeInstance() : MultiSpeciesType
• createStoichiometryMath() : SpeciesReference
• createStyle() : GlobalRenderInformation
• createSubListOfSpeciesFeatures() : MultiSpeciesPlugin
• createSubmodel() : CompModelPlugin
• createText() : ListOfDrawables, RenderGroup
• createTextGlyph() : Layout
• createTrigger() : Event
• createTypeString() : Style
• createUncertainty() : DistribSBasePlugin, ListOfUncertainties
• createUncertParameter() : ListOfUncertParameters, Uncertainty, UncertParameter
• createUncertSpan() : ListOfUncertParameters, Uncertainty, UncertParameter
• createUnit() : UnitDefinition
• createUserDefinedConstraint() : FbcModelPlugin, ListOfUserDefinedConstraints
• createUserDefinedConstraintComponent() : ListOfUserDefinedConstraintComponents, UserDefinedConstraint
• createValueString() : ColorDefinition
• createVectorOfChildTypes() : ASTNode
• CSGeometry() : CSGeometry
• CSGHomogeneousTransformation() : CSGHomogeneousTransformation
• CSGNode() : CSGNode
• CSGObject() : CSGObject
• CSGPrimitive() : CSGPrimitive
• CSGRotation() : CSGRotation
• CSGScale() : CSGScale
• CSGSetOperator() : CSGSetOperator
• CSGTransformation() : CSGTransformation
• CSGTranslation() : CSGTranslation
• CubicBezier() : CubicBezier
• Curve() : Curve
• CVTerm() : CVTerm