libSBML C++ API  5.20.4
ModelCreator Class Reference

Detailed Description

MIRIAM-compliant data about a model's creator.

This class of objects is defined by libSBML only and has no direct equivalent in terms of SBML components. This class is not prescribed by the SBML specifications, although it is used to implement features defined in SBML.

The SBML specification beginning with Level 2 Version 2 defines a standard approach to recording model history and model creator information in a form that complies with MIRIAM ("Minimum Information Requested in the Annotation of biochemical Models", Nature Biotechnology, vol. 23, no. 12, Dec. 2005). For the model creator, this form involves the use of parts of the vCard representation. LibSBML provides the ModelCreator class as a convenience high-level interface for working with model creator data. Objects of class ModelCreator can be used to store and carry around creator data within a program, and the various methods in this object class let callers manipulate the different parts of the model creator representation.

The different parts of a model creator definition

The ModelCreator class mirrors the structure of the MIRIAM model creator annotations in SBML. The following template illustrates these different fields when they are written in XML form:

<vCard:N rdf:parseType="Resource">
  <vCard:Family>family name</vCard:Family>
  <vCard:Given>given name</vCard:Given>
</vCard:N>
...
<vCard:EMAIL>email address</vCard:EMAIL>
...
<vCard:ORG rdf:parseType="Resource">
  <vCard:Orgname>organization</vCard:Orgname>
</vCard:ORG>

Each of the separate data values family name, given name, email address, and organization can be set and retrieved via corresponding methods in the ModelCreator class. These methods are documented in more detail below.

Examples
addModelHistory.cpp.

Public Member Functions

ModelCreatorclone () const
 Creates and returns a deep copy of this ModelCreator object. More...
 
const std::string & getEmail () const
 Returns the "email" stored in this ModelCreator object. More...
 
const std::string & getFamilyName () const
 Returns the "family name" stored in this ModelCreator object. More...
 
const std::string & getGivenName () const
 Returns the "given name" stored in this ModelCreator object. More...
 
const std::string & getName () const
 Returns the "fn" stored in this ModelCreator object when using vCard4. More...
 
const std::string & getOrganisation () const
 (Alternate spelling) Returns the "organization" stored in this ModelCreator object. More...
 
const std::string & getOrganization () const
 Returns the "organization" stored in this ModelCreator object. More...
 
bool hasRequiredAttributes ()
 Predicate returning true if all the required elements for this ModelCreator object have been set. More...
 
bool isSetEmail ()
 Predicate returning true or false depending on whether this ModelCreator's "email" part is set. More...
 
bool isSetFamilyName ()
 Predicate returning true or false depending on whether this ModelCreator's "family name" part is set. More...
 
bool isSetGivenName ()
 Predicate returning true or false depending on whether this ModelCreator's "given name" part is set. More...
 
bool isSetName ()
 Predicate returning true or false depending on whether this ModelCreator's "fn" part is set (when using vCard4). More...
 
bool isSetOrganisation ()
 (Alternate spelling) Predicate returning true or false depending on whether this ModelCreator's "organization" part is set. More...
 
bool isSetOrganization ()
 Predicate returning true or false depending on whether this ModelCreator's "organization" part is set. More...
 
 ModelCreator ()
 Creates a new ModelCreator object. More...
 
 ModelCreator (const ModelCreator &orig)
 Copy constructor; creates a copy of the ModelCreator. More...
 
 ModelCreator (const XMLNode creator)
 Creates a new ModelCreator from an XMLNode. More...
 
ModelCreatoroperator= (const ModelCreator &rhs)
 Assignment operator. More...
 
int setEmail (const std::string &email)
 Sets the "email" portion of this ModelCreator object. More...
 
int setFamilyName (const std::string &familyName)
 Sets the "family name" portion of this ModelCreator object. More...
 
int setGivenName (const std::string &givenName)
 Sets the "given name" portion of this ModelCreator object. More...
 
int setName (const std::string &name)
 Sets the "fn" portion of this ModelCreator object (when using vCard4). More...
 
int setOrganisation (const std::string &organization)
 (Alternate spelling) Sets the "organization" portion of this ModelCreator object. More...
 
int setOrganization (const std::string &organization)
 Sets the "organization" portion of this ModelCreator object. More...
 
int unsetEmail ()
 Unsets the "email" portion of this ModelCreator object. More...
 
int unsetFamilyName ()
 Unsets the "family name" portion of this ModelCreator object. More...
 
int unsetGivenName ()
 Unsets the "given name" portion of this ModelCreator object. More...
 
int unsetName ()
 Unsets the "fn" portion of this ModelCreator object (when using vCard4). More...
 
int unsetOrganisation ()
 (Alternate spelling) Unsets the "organization" portion of this ModelCreator object. More...
 
int unsetOrganization ()
 Unsets the "organization" portion of this ModelCreator object. More...
 
 ~ModelCreator ()
 Destroys the ModelCreator. More...
 

Constructor & Destructor Documentation

◆ ModelCreator() [1/3]

ModelCreator::ModelCreator ( )

Creates a new ModelCreator object.

◆ ModelCreator() [2/3]

ModelCreator::ModelCreator ( const XMLNode  creator)

Creates a new ModelCreator from an XMLNode.

Parameters
creatorthe XMLNode from which to create the ModelCreator.

◆ ~ModelCreator()

ModelCreator::~ModelCreator ( )

Destroys the ModelCreator.

◆ ModelCreator() [3/3]

ModelCreator::ModelCreator ( const ModelCreator orig)

Copy constructor; creates a copy of the ModelCreator.

Parameters
origthe object to copy.

Member Function Documentation

◆ clone()

ModelCreator * ModelCreator::clone ( ) const

Creates and returns a deep copy of this ModelCreator object.

Returns
the (deep) copy of this ModelCreator object.

◆ getEmail()

const std::string& ModelCreator::getEmail ( ) const
inline

Returns the "email" stored in this ModelCreator object.

Returns
email from the ModelCreator.

◆ getFamilyName()

const std::string& ModelCreator::getFamilyName ( ) const
inline

Returns the "family name" stored in this ModelCreator object.

Returns
the "family name" portion of the ModelCreator object.

◆ getGivenName()

const std::string& ModelCreator::getGivenName ( ) const
inline

Returns the "given name" stored in this ModelCreator object.

Returns
the "given name" portion of the ModelCreator object.

◆ getName()

const std::string& ModelCreator::getName ( ) const
inline

Returns the "fn" stored in this ModelCreator object when using vCard4.

Returns
the "fn" portion of the ModelCreator object.

◆ getOrganisation()

const std::string& ModelCreator::getOrganisation ( ) const
inline

(Alternate spelling) Returns the "organization" stored in this ModelCreator object.

Note
This function is an alias of getOrganization().
Returns
organization from the ModelCreator.
See also
getOrganization()

◆ getOrganization()

const std::string& ModelCreator::getOrganization ( ) const
inline

Returns the "organization" stored in this ModelCreator object.

Returns
organization from the ModelCreator.

◆ hasRequiredAttributes()

bool ModelCreator::hasRequiredAttributes ( )

Predicate returning true if all the required elements for this ModelCreator object have been set.

The only required elements for a ModelCreator object are the "family name" and "given name".

Returns
a boolean value indicating whether all the required elements for this object have been defined.

◆ isSetEmail()

bool ModelCreator::isSetEmail ( )

Predicate returning true or false depending on whether this ModelCreator's "email" part is set.

Returns
true if the email of this ModelCreator is set, false otherwise.

◆ isSetFamilyName()

bool ModelCreator::isSetFamilyName ( )

Predicate returning true or false depending on whether this ModelCreator's "family name" part is set.

Returns
true if the familyName of this ModelCreator is set, false otherwise.

◆ isSetGivenName()

bool ModelCreator::isSetGivenName ( )

Predicate returning true or false depending on whether this ModelCreator's "given name" part is set.

Returns
true if the givenName of this ModelCreator is set, false otherwise.

◆ isSetName()

bool ModelCreator::isSetName ( )

Predicate returning true or false depending on whether this ModelCreator's "fn" part is set (when using vCard4).

Returns
true if the fn of this ModelCreator is set, false otherwise.

◆ isSetOrganisation()

bool ModelCreator::isSetOrganisation ( )

(Alternate spelling) Predicate returning true or false depending on whether this ModelCreator's "organization" part is set.

Note
This function is an alias of isSetOrganization().
Returns
true if the organization of this ModelCreator is set, false otherwise.
See also
isSetOrganization()

◆ isSetOrganization()

bool ModelCreator::isSetOrganization ( )

Predicate returning true or false depending on whether this ModelCreator's "organization" part is set.

Returns
true if the organization of this ModelCreator is set, false otherwise.

◆ operator=()

ModelCreator & ModelCreator::operator= ( const ModelCreator rhs)

Assignment operator.

Parameters
rhsthe object whose values are used as the basis of the assignment.

◆ setEmail()

int ModelCreator::setEmail ( const std::string &  email)

Sets the "email" portion of this ModelCreator object.

Parameters
emaila string representing the email of the ModelCreator.
Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are:
Examples
addModelHistory.cpp.

◆ setFamilyName()

int ModelCreator::setFamilyName ( const std::string &  familyName)

Sets the "family name" portion of this ModelCreator object.

Parameters
familyNamea string representing the familyName of the ModelCreator.
Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are:
Examples
addModelHistory.cpp.

◆ setGivenName()

int ModelCreator::setGivenName ( const std::string &  givenName)

Sets the "given name" portion of this ModelCreator object.

Parameters
givenNamea string representing the givenName of the ModelCreator.
Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are:
Examples
addModelHistory.cpp.

◆ setName()

int ModelCreator::setName ( const std::string &  name)

Sets the "fn" portion of this ModelCreator object (when using vCard4).

Parameters
namea string representing the fn of the ModelCreator.
Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are:

◆ setOrganisation()

int ModelCreator::setOrganisation ( const std::string &  organization)

(Alternate spelling) Sets the "organization" portion of this ModelCreator object.

Parameters
organizationa string representing the organization of the ModelCreator.
Note
This function is an alias of setOrganization(const std::string& organization).
Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are:
See also
setOrganization(std::string organization)

◆ setOrganization()

int ModelCreator::setOrganization ( const std::string &  organization)

Sets the "organization" portion of this ModelCreator object.

Parameters
organizationa string representing the organization of the ModelCreator.
Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are:
Examples
addModelHistory.cpp.

◆ unsetEmail()

int ModelCreator::unsetEmail ( )

Unsets the "email" portion of this ModelCreator object.

Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are:

◆ unsetFamilyName()

int ModelCreator::unsetFamilyName ( )

Unsets the "family name" portion of this ModelCreator object.

Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are:

◆ unsetGivenName()

int ModelCreator::unsetGivenName ( )

Unsets the "given name" portion of this ModelCreator object.

Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are:

◆ unsetName()

int ModelCreator::unsetName ( )

Unsets the "fn" portion of this ModelCreator object (when using vCard4).

Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are:

◆ unsetOrganisation()

int ModelCreator::unsetOrganisation ( )

(Alternate spelling) Unsets the "organization" portion of this ModelCreator object.

Note
This function is an alias of unsetOrganization().
Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are:
See also
unsetOrganization()

◆ unsetOrganization()

int ModelCreator::unsetOrganization ( )

Unsets the "organization" portion of this ModelCreator object.

Returns
integer value indicating success/failure of the function. The value is drawn from the enumeration OperationReturnValues_t. The possible values returned by this function are: