addModelHistory.cpp

Adds a model history to a model.

/**
 * \file    addModelHistory.cpp
 * \brief   adds Model History to a model
 * \author  Sarah Keating
 *
 * <!--------------------------------------------------------------------------
 * This sample program is distributed under a different license than the rest
 * of libSBML.  This program uses the open-source MIT license, as follows:
 *
 * Copyright (c) 2013-2018 by the California Institute of Technology
 * (California, USA), the European Bioinformatics Institute (EMBL-EBI, UK)
 * and the University of Heidelberg (Germany), with support from the National
 * Institutes of Health (USA) under grant R01GM070923.  All rights reserved.
 *
 * Permission is hereby granted, free of charge, to any person obtaining a
 * copy of this software and associated documentation files (the "Software"),
 * to deal in the Software without restriction, including without limitation
 * the rights to use, copy, modify, merge, publish, distribute, sublicense,
 * and/or sell copies of the Software, and to permit persons to whom the
 * Software is furnished to do so, subject to the following conditions:
 *
 * The above copyright notice and this permission notice shall be included in
 * all copies or substantial portions of the Software.
 *
 * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
 * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
 * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
 * THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
 * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
 * FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
 * DEALINGS IN THE SOFTWARE.
 *
 * Neither the name of the California Institute of Technology (Caltech), nor
 * of the European Bioinformatics Institute (EMBL-EBI), nor of the University
 * of Heidelberg, nor the names of any contributors, may be used to endorse
 * or promote products derived from this software without specific prior
 * written permission.
 * ------------------------------------------------------------------------ -->
 */
 
 
#include <iostream>
#include <sbml/SBMLTypes.h>
 
#include <sbml/xml/XMLNode.h>
#include <sbml/annotation/ModelHistory.h>
using namespace std;
LIBSBML_CPP_NAMESPACE_USE
 
void printStatus(std::string message, int status)
{
    std::string statusString; 
    switch(status)
    {
    case LIBSBML_OPERATION_SUCCESS:
        statusString = "succeeded";
        break;
    case LIBSBML_INVALID_OBJECT:
        statusString = "invalid object";
        break;
    case LIBSBML_OPERATION_FAILED:
        statusString = "operation failed";
        break;
    default: 
        statusString = "unknown";
        break;
    }
 
    cout << message << statusString << endl;
 
}
 
int
main (int argc, char *argv[])
{
 
  SBMLDocument* d;
  unsigned int  errors;
 
  if (argc != 3)
  {
    cout << endl
         << "  usage: addModelHistory <input-filename> <output-filename>" << endl
         << endl;
    return 2;
  }
 
 
  d      = readSBML(argv[1]);
  errors = d->getNumErrors();
 
  if (errors > 0)
  {
    cout << "Read Error(s):" << endl;
      d->printErrors(cout);
 
    cout << "Correct the above and re-run." << endl;
  }
  else
  {
    ModelHistory * h = new ModelHistory();
 
    ModelCreator *c = new ModelCreator();
    c->setFamilyName("Keating");
    c->setGivenName("Sarah");
    c->setEmail("sbml-team@caltech.edu");
    c->setOrganization("University of Hertfordshire");
 
    int status = h->addCreator(c);
    printStatus("Status for addCreator: ", status);
 
 
    Date * date = new Date("1999-11-13T06:54:32");
    Date * date2 = new Date("2007-11-30T06:54:00-02:00");
   
    status = h->setCreatedDate(date);
    printStatus("Set created date:      ", status);
 
    status = h->setModifiedDate(date2);
    printStatus("Set modified date:     ", status);
 
    status = d->getModel()->setModelHistory(h);
    printStatus("Set model history:     ", status);
 
    delete h;
    delete c;
    delete date;
    delete date2;
    writeSBML(d, argv[2]);
  }
 
  delete d;
  return errors;
}