Here is a list of all class members with links to the classes they belong to:

- g -

• GeneAssociation() : GeneAssociation
• GeneProduct() : GeneProduct
• GeneProductAssociation : FbcAssociation , GeneProductAssociation
• GeneProductRef() : GeneProductRef
• GeneralGlyph() : GeneralGlyph
• Geometry() : Geometry
• GeometryDefinition() : GeometryDefinition
• get() : List , ListOf , ListOfAdjacentDomains , ListOfAnalyticVolumes , ListOfColorDefinitions , ListOfCompartmentGlyphs , ListOfCompartmentReferences , ListOfCompartments , ListOfCompartmentTypes , ListOfConstraints , ListOfCoordinateComponents , ListOfCSGNodes , ListOfCSGObjects , ListOfCurveElements , ListOfDeletions , ListOfDomains , ListOfDomainTypes , ListOfDrawables , ListOfEventAssignments , ListOfEvents , ListOfExternalModelDefinitions , ListOfFbcAssociations , ListOfFluxBounds , ListOfFluxObjectives , ListOfFunctionDefinitions , ListOfFunctionTerms , ListOfGeneAssociations , ListOfGeneProducts , ListOfGeometryDefinitions , ListOfGlobalRenderInformation , ListOfGlobalStyles , ListOfGradientDefinitions , ListOfGradientStops , ListOfGraphicalObjects , ListOfGroups , ListOfInitialAssignments , ListOfInputs , ListOfInSpeciesTypeBonds , ListOfInteriorPoints , ListOfKeyValuePairs , ListOfLayouts , ListOfLineEndings , ListOfLineSegments , ListOfLocalParameters , ListOfLocalRenderInformation , ListOfLocalStyles , ListOfMembers , ListOfModelDefinitions , ListOfMultiSpeciesTypes , ListOfObjectives , ListOfOrdinalMappings , ListOfOutputs , ListOfOutwardBindingSites , ListOfParameters , ListOfParametricObjects , ListOfPorts , ListOfPossibleSpeciesFeatureValues , ListOfQualitativeSpecies , ListOfReactionGlyphs , ListOfReactions , ListOfReferenceGlyphs , ListOfReplacedElements , ListOfRules , ListOfSampledFields , ListOfSampledVolumes , ListOfSpecies , ListOfSpeciesFeatures , ListOfSpeciesFeatureTypes , ListOfSpeciesFeatureValues , ListOfSpeciesGlyphs , ListOfSpeciesReferenceGlyphs , ListOfSpeciesReferences , ListOfSpeciesTypeComponentIndexes , ListOfSpeciesTypeComponentMapInProducts , ListOfSpeciesTypeInstances , ListOfSpeciesTypes , ListOfSubmodels , ListOfTextGlyphs , ListOfTransitions , ListOfUncertainties , ListOfUncertParameters , ListOfUnitDefinitions , ListOfUnits , ListOfUserDefinedConstraintComponents , ListOfUserDefinedConstraints , SubListOfSpeciesFeatures
• getAbsoluteValue() : RelAbsVector
• getActiveObjective() : FbcModelPlugin , ListOfObjectives
• getActiveObjectiveId() : FbcModelPlugin
• getActualArrayDataLength() : SpatialPoints
• getActualComponentsLength() : TransformationComponent
• getActualPointIndexLength() : ParametricObject
• getActualSamplesLength() : SampledField
• getAddDefaultUnits() : SBMLLevelVersionConverter
• getAdditionalGraphicalObject() : Layout
• getAdjacentDomains() : Geometry
• getAdjacentDomainsByDomain1() : Geometry
• getAdjacentDomainsByDomain2() : Geometry
• getAdvectionCoefficient() : SpatialParameterPlugin
• getAllElementIdList() : Model
• getAllElementMetaIdList() : Model
• getAllElements() : AnalyticGeometry , BoundingBox , CompModelPlugin , CompSBasePlugin , CompSBMLDocumentPlugin , CoordinateComponent , CSGeometry , CSGHomogeneousTransformation , CSGObject , CSGSetOperator , CSGTransformation , CubicBezier , Curve , DistribSBasePlugin , Domain , Event , FbcAnd , FbcModelPlugin , FbcOr , FbcReactionPlugin , FbcSBasePlugin , GeneProductAssociation , GeneralGlyph , Geometry , GlobalRenderInformation , GradientBase , GraphicalObject , Group , GroupsModelPlugin , KineticLaw , Layout , LayoutModelPlugin , LineEnding , LineSegment , ListOf , ListOfFunctionTerms , ListOfGlobalRenderInformation , ListOfLocalRenderInformation , LocalRenderInformation , MixedGeometry , Model , MultiCompartmentPlugin , MultiModelPlugin , MultiSimpleSpeciesReferencePlugin , MultiSpeciesPlugin , MultiSpeciesReferencePlugin , MultiSpeciesType , Objective , ParametricGeometry , Polygon , QualModelPlugin , Reaction , ReactionGlyph , ReferenceGlyph , RenderCurve , RenderGroup , RenderInformationBase , RenderLayoutPlugin , RenderListOfLayoutsPlugin , SampledFieldGeometry , SBase , SBasePlugin , SBaseRef , SBMLDocument , SpatialCompartmentPlugin , SpatialModelPlugin , SpatialParameterPlugin , SpeciesFeature , SpeciesFeatureType , SpeciesReferenceGlyph , Style , Submodel , Transition , Uncertainty , UncertParameter , UnitDefinition , UserDefinedConstraint
• getAllElementsFromPlugins() : SBase
• getAllInstantiatedElements() : Submodel
• getAllRegisteredPackageNames() : SBMLExtensionRegistry
• getAlpha() : ColorDefinition
• getAnalyticVolume() : AnalyticGeometry
• getAnalyticVolumeByDomainType() : AnalyticGeometry
• getAncestorOfType() : SBase
• getAnnotation() : SBase
• getAnnotationString() : SBase
• getApplicableValidators() : SBMLInternalValidator
• getAreaUnits() : Model
• getArgument() : FunctionDefinition
• getArrayData() : SpatialPoints
• getArrayDataLength() : SpatialPoints
• getAssignmentRule() : Model
• getAssignmentRuleByVariable() : Model
• getAssociatedSpecies() : GeneProduct
• getAssociation() : FbcAnd , FbcOr , GeneAssociation , GeneProductAssociation
• getASTPlugin() : ASTNode , SBMLExtensionRegistry
• getASTPlugins() : SBMLExtensionRegistry
• getAttributes() : XMLToken
• getAttributesLength() : XMLToken
• getAttrIndex() : XMLToken
• getAttrName() : XMLToken
• getAttrPrefix() : XMLToken
• getAttrPrefixedName() : XMLToken
• getAttrURI() : XMLToken
• getAttrValue() : XMLToken
• getBackgroundColor() : DefaultValues , RenderInformationBase
• getBasePoint1() : CubicBezier
• getBasePoint1_x() : RenderCubicBezier
• getBasePoint1_y() : RenderCubicBezier
• getBasePoint1_z() : RenderCubicBezier
• getBasePoint2() : CubicBezier
• getBasePoint2_x() : RenderCubicBezier
• getBasePoint2_y() : RenderCubicBezier
• getBasePoint2_z() : RenderCubicBezier
• getBindingSite1() : InSpeciesTypeBond
• getBindingSite2() : InSpeciesTypeBond
• getBindingStatus() : OutwardBindingSite
• getBiologicalQualifierType() : CVTerm
• getBlue() : ColorDefinition
• getBody() : FunctionDefinition
• getBoolValue() : ConversionOption , ConversionProperties
• getBoundaryCondition() : SpatialParameterPlugin , Species
• getBoundaryDomainType() : BoundaryCondition
• getBoundaryMax() : CoordinateComponent
• getBoundaryMin() : CoordinateComponent
• getBoundingBox() : GraphicalObject , LineEnding
• getBoundingBoxExplicitlySet() : GraphicalObject
• getByDomain1() : ListOfAdjacentDomains
• getByDomain2() : ListOfAdjacentDomains
• getByDomainType() : ListOfAnalyticVolumes , ListOfCSGObjects , ListOfDomains , ListOfParametricObjects , ListOfSampledVolumes
• getByGeometryDefinition() : ListOfOrdinalMappings
• getByIdRef() : ListOfMembers
• getByLowerBound() : ListOfUserDefinedConstraints
• getBySpecies() : ListOfInputs , ListOfOutputs
• getByType() : ListOfUncertParameters
• getByUpperBound() : ListOfUserDefinedConstraints
• getByVar() : ListOfUncertParameters
• getByVariable() : ListOfUserDefinedConstraintComponents
• getCategory() : FbcExtension , Validator , XMLError
• getCategoryAsString() : XMLError
• getCenterX() : RadialGradient
• getCenterY() : RadialGradient
• getCenterZ() : RadialGradient
• getCharacter() : ASTNode
• getCharacters() : XMLToken
• getCharge() : FbcSpeciesPlugin , Species
• getChargeAsDouble() : FbcSpeciesPlugin
• getChemicalFormula() : FbcSpeciesPlugin
• getChild() : ASTNode , XMLNode
• getClass() : ASTNode
• getCoeff() : SBMLRateRuleConverter
• getCoefficient() : FluxObjective , UserDefinedConstraintComponent
• getColorDefinition() : RenderInformationBase
• getColumn() : SBase , XMLError , XMLToken
• getComparisonCaseSensitivity() : L3ParserSettings
• getCompartment() : CompartmentReference , Model , MultiSpeciesType , QualitativeSpecies , Reaction , Species
• getCompartmentGlyph() : Layout
• getCompartmentId() : CompartmentGlyph
• getCompartmentMapping() : SpatialCompartmentPlugin
• getCompartmentReference() : MultiCompartmentPlugin , MultiSimpleSpeciesReferencePlugin , SpeciesTypeInstance
• getCompartmentType() : Compartment , Model , MultiCompartmentPlugin
• getComplementA() : CSGSetOperator
• getComplementB() : CSGSetOperator
• getComponent() : OutwardBindingSite , SpeciesFeature , SpeciesTypeComponentIndex , SubListOfSpeciesFeatures
• getComponents() : TransformationComponent
• getComponentsLength() : TransformationComponent
• getCompression() : ParametricObject , SampledField , SpatialPoints
• getCompressionAsString() : ParametricObject , SampledField , SpatialPoints
• getConstant() : Compartment , Parameter , QualitativeSpecies , Species , SpeciesReference
• getConstraint() : Model
• getConversionFactor() : Model , ReplacedElement , Species
• getConversionValidators() : SBMLInternalValidator
• getConverterByIndex() : SBMLConverterRegistry
• getConverterFor() : SBMLConverterRegistry
• getCoord1() : InteriorPoint
• getCoord2() : InteriorPoint
• getCoord3() : InteriorPoint
• getCoordinate() : AdvectionCoefficient , RelAbsVector
• getCoordinateAsString() : AdvectionCoefficient
• getCoordinateBoundary() : BoundaryCondition
• getCoordinateComponent() : Geometry
• getCoordinateComponentByKind() : Geometry
• getCoordinateReference1() : DiffusionCoefficient
• getCoordinateReference1AsString() : DiffusionCoefficient
• getCoordinateReference2() : DiffusionCoefficient
• getCoordinateReference2AsString() : DiffusionCoefficient
• getCoordinateSystem() : Geometry
• getCoordinateSystemAsString() : Geometry
• getCoreDefinitionsAdded() : DefinitionURLRegistry
• getCreatedDate() : ModelHistory , SBase
• getCreator() : ModelHistory
• getCSGNode() : CSGObject , CSGSetOperator , CSGTransformation
• getCSGObject() : CSGeometry
• getCSGObjectByDomainType() : CSGeometry
• getCurve() : GeneralGlyph , ReactionGlyph , ReferenceGlyph , SpeciesReferenceGlyph
• getCurveElement() : RenderCurve
• getCurveExplicitlySet() : GeneralGlyph , ReactionGlyph , ReferenceGlyph , SpeciesReferenceGlyph
• getCurveSegment() : Curve
• getCVTerm() : SBase
• getCVTerms() : SBase
• getCX() : Ellipse
• getCx() : RadialGradient
• getCY() : Ellipse
• getCy() : RadialGradient
• getCZ() : Ellipse
• getCz() : RadialGradient
• getDashArray() : GraphicalPrimitive1D
• getDashByIndex() : GraphicalPrimitive1D
• getDataType() : ParametricObject , SampledField , SpatialPoints
• getDataTypeAsString() : ParametricObject , SampledField , SpatialPoints
• getDateAsString() : Date
• getDay() : Date
• getDefault_z() : DefaultValues
• getDefaultLevel() : CompExtension , DistribExtension , FbcExtension , GroupsExtension , LayoutExtension , MultiExtension , QualExtension , RenderExtension , SBMLDocument , SpatialExtension
• getDefaultPackageVersion() : CompExtension , DistribExtension , FbcExtension , GroupsExtension , LayoutExtension , MultiExtension , QualExtension , RenderExtension , SpatialExtension
• getDefaultProperties() : CobraToFbcConverter , CompFlatteningConverter , FbcToCobraConverter , FbcV1ToV2Converter , FbcV2ToV1Converter , RenderLayoutConverter , SBMLConverter , SBMLFunctionDefinitionConverter , SBMLIdConverter , SBMLInferUnitsConverter , SBMLInitialAssignmentConverter , SBMLLevel1Version1Converter , SBMLLevelVersionConverter , SBMLLocalParameterConverter , SBMLRateOfConverter , SBMLRateRuleConverter , SBMLReactionConverter , SBMLRuleConverter , SBMLStripPackageConverter , SBMLUnitsConverter
• getDefaultTerm() : ListOfFunctionTerms , Transition
• getDefaultValues() : ListOfGlobalRenderInformation , ListOfLocalRenderInformation
• getDefaultVersion() : CompExtension , DistribExtension , FbcExtension , GroupsExtension , LayoutExtension , MultiExtension , QualExtension , RenderExtension , SBMLDocument , SpatialExtension
• getDefinitionURL() : ASTNode , UncertParameter
• getDefinitionUrlByIndex() : DefinitionURLRegistry
• getDefinitionURLString() : ASTNode
• getDelay() : Event
• getDeletion() : ReplacedElement , Submodel
• getDenominator() : ASTNode , SpeciesReference
• getDepth() : Dimensions
• getDerivedUnitDefinition() : Compartment , Delay , EventAssignment , InitialAssignment , KineticLaw , LocalParameter , Parameter , Rule , Species , StoichiometryMath
• getDescription() : ConversionOption , ConversionProperties
• getDExplicitlySet() : Dimensions
• getDiffusionCoefficient() : SpatialParameterPlugin
• getDimensions() : BoundingBox , Layout
• getDimensionsExplicitlySet() : BoundingBox , Layout
• getDisabledPlugin() : SBase
• getDivider() : CompModelPlugin
• getDocument() : SBMLConverter , SBMLValidator
• getDomain() : Geometry
• getDomain1() : AdjacentDomains
• getDomain2() : AdjacentDomains
• getDomainByDomainType() : Geometry
• getDomainType() : AnalyticVolume , CompartmentMapping , CSGObject , Domain , Geometry , ParametricObject , SampledVolume
• getDoubleValue() : ConversionOption , ConversionProperties
• getElement() : Polygon , RenderCurve , RenderGroup
• getElementByMetaId() : AnalyticGeometry , CompModelPlugin , CompSBasePlugin , CompSBMLDocumentPlugin , CoordinateComponent , CSGeometry , CSGHomogeneousTransformation , CSGObject , CSGSetOperator , CSGTransformation , DistribSBasePlugin , Domain , Event , FbcModelPlugin , FbcSBasePlugin , GeneProductAssociation , Geometry , GlobalRenderInformation , GradientBase , Group , GroupsModelPlugin , KineticLaw , LineEnding , ListOf , ListOfGlobalRenderInformation , ListOfLocalRenderInformation , LocalRenderInformation , MixedGeometry , Model , Objective , ParametricGeometry , Polygon , QualModelPlugin , Reaction , RenderCurve , RenderGroup , RenderInformationBase , SampledFieldGeometry , SBase , SBasePlugin , SBaseRef , SBMLDocument , SpatialCompartmentPlugin , SpatialModelPlugin , SpatialParameterPlugin , Style , Submodel , Transition , Uncertainty , UncertParameter , UnitDefinition , UserDefinedConstraint
• getElementBySId() : AnalyticGeometry , CompModelPlugin , CompSBasePlugin , CompSBMLDocumentPlugin , CoordinateComponent , CSGeometry , CSGHomogeneousTransformation , CSGObject , CSGSetOperator , CSGTransformation , DistribSBasePlugin , Domain , Event , FbcModelPlugin , FbcSBasePlugin , GeneProductAssociation , Geometry , GlobalRenderInformation , GradientBase , Group , GroupsModelPlugin , KineticLaw , LineEnding , ListOf , ListOfEventAssignments , ListOfGlobalRenderInformation , ListOfInitialAssignments , ListOfLocalParameters , ListOfLocalRenderInformation , ListOfPorts , ListOfRules , ListOfUnitDefinitions , LocalRenderInformation , MixedGeometry , Model , Objective , ParametricGeometry , Polygon , QualModelPlugin , Reaction , RenderCurve , RenderGroup , RenderInformationBase , SampledFieldGeometry , SBase , SBasePlugin , SBaseRef , SBMLDocument , SpatialCompartmentPlugin , SpatialModelPlugin , SpatialParameterPlugin , Style , Submodel , Transition , Uncertainty , UncertParameter , UnitDefinition , UserDefinedConstraint
• getElementName() : AdjacentDomains , AdvectionCoefficient , AnalyticGeometry , AnalyticVolume , Association , BindingSiteSpeciesType , Boundary , BoundaryCondition , BoundingBox , ColorDefinition , Compartment , CompartmentGlyph , CompartmentMapping , CompartmentReference , CompartmentType , Constraint , CoordinateComponent , CSGeometry , CSGHomogeneousTransformation , CSGNode , CSGObject , CSGPrimitive , CSGRotation , CSGScale , CSGSetOperator , CSGTransformation , CSGTranslation , CubicBezier , Curve , DefaultTerm , DefaultValues , Delay , Deletion , DiffusionCoefficient , Dimensions , DistribBase , Domain , DomainType , Ellipse , Event , EventAssignment , ExternalModelDefinition , FbcAnd , FbcAssociation , FbcOr , FluxBound , FluxObjective , FunctionDefinition , FunctionTerm , GeneAssociation , GeneProduct , GeneProductAssociation , GeneProductRef , GeneralGlyph , Geometry , GeometryDefinition , GlobalRenderInformation , GlobalStyle , GradientBase , GradientStop , GraphicalObject , GraphicalPrimitive2D , Group , Image , InitialAssignment , Input , InSpeciesTypeBond , InteriorPoint , IntraSpeciesReaction , KeyValuePair , KineticLaw , Layout , LinearGradient , LineEnding , LineSegment , ListOf , ListOfAdjacentDomains , ListOfAnalyticVolumes , ListOfColorDefinitions , ListOfCompartmentGlyphs , ListOfCompartmentReferences , ListOfCompartments , ListOfCompartmentTypes , ListOfConstraints , ListOfCoordinateComponents , ListOfCSGNodes , ListOfCSGObjects , ListOfCurveElements , ListOfDeletions , ListOfDomains , ListOfDomainTypes , ListOfDrawables , ListOfEventAssignments , ListOfEvents , ListOfExternalModelDefinitions , ListOfFbcAssociations , ListOfFluxBounds , ListOfFluxObjectives , ListOfFunctionDefinitions , ListOfFunctionTerms , ListOfGeneAssociations , ListOfGeneProducts , ListOfGeometryDefinitions , ListOfGlobalRenderInformation , ListOfGlobalStyles , ListOfGradientDefinitions , ListOfGradientStops , ListOfGraphicalObjects , ListOfGroups , ListOfInitialAssignments , ListOfInputs , ListOfInSpeciesTypeBonds , ListOfInteriorPoints , ListOfKeyValuePairs , ListOfLayouts , ListOfLineEndings , ListOfLineSegments , ListOfLocalParameters , ListOfLocalRenderInformation , ListOfLocalStyles , ListOfMembers , ListOfModelDefinitions , ListOfMultiSpeciesTypes , ListOfObjectives , ListOfOrdinalMappings , ListOfOutputs , ListOfOutwardBindingSites , ListOfParameters , ListOfParametricObjects , ListOfPorts , ListOfPossibleSpeciesFeatureValues , ListOfQualitativeSpecies , ListOfReactionGlyphs , ListOfReactions , ListOfReferenceGlyphs , ListOfReplacedElements , ListOfRules , ListOfSampledFields , ListOfSampledVolumes , ListOfSpecies , ListOfSpeciesFeatures , ListOfSpeciesFeatureTypes , ListOfSpeciesFeatureValues , ListOfSpeciesGlyphs , ListOfSpeciesReferenceGlyphs , ListOfSpeciesReferences , ListOfSpeciesTypeComponentIndexes , ListOfSpeciesTypeComponentMapInProducts , ListOfSpeciesTypeInstances , ListOfSpeciesTypes , ListOfSubmodels , ListOfTextGlyphs , ListOfTransitions , ListOfUncertainties , ListOfUncertParameters , ListOfUnitDefinitions , ListOfUnits , ListOfUserDefinedConstraintComponents , ListOfUserDefinedConstraints , LocalParameter , LocalRenderInformation , LocalStyle , Member , MixedGeometry , Model , ModelDefinition , ModifierSpeciesReference , MultiSpeciesType , Objective , OrdinalMapping , Output , OutwardBindingSite , Parameter , ParametricGeometry , ParametricObject , Point , Polygon , Port , PossibleSpeciesFeatureValue , Priority , QualitativeSpecies , RadialGradient , Reaction , ReactionGlyph , Rectangle , ReferenceGlyph , RenderCubicBezier , RenderCurve , RenderGroup , RenderPoint , ReplacedBy , ReplacedElement , Rule , SampledField , SampledFieldGeometry , SampledVolume , SBase , SBaseExtensionPoint , SBaseRef , SBMLDocument , SpatialPoints , SpatialSymbolReference , Species , SpeciesFeature , SpeciesFeatureType , SpeciesFeatureValue , SpeciesGlyph , SpeciesReference , SpeciesReferenceGlyph , SpeciesType , SpeciesTypeComponentIndex , SpeciesTypeComponentMapInProduct , SpeciesTypeInstance , StoichiometryMath , Style , SubListOfSpeciesFeatures , Submodel , Text , TextGlyph , Transformation2D , Transformation , TransformationComponent , Transition , Trigger , Uncertainty , UncertParameter , UncertSpan , Unit , UnitDefinition , UserDefinedConstraint , UserDefinedConstraintComponent
• getElementNamespace() : SBasePlugin
• getEmail() : ModelCreator
• getEnableRotationalMapping() : DefaultValues , LineEnding
• getEncoding() : XMLInputStream
• getEnd() : LineSegment
• getEndHead() : DefaultValues , RenderCurve , RenderGroup
• getError() : SBMLDocument , SBMLErrorLog , XMLErrorLog
• getErrorId() : XMLError
• getErrorIdOffset() : XMLError
• getErrorLog() : SBMLDocument , SBMLValidator , XMLInputStream
• getErrorWithSeverity() : SBMLDocument , SBMLErrorLog
• getEvent() : Model
• getEventAssignment() : Event
• getExponent() : ASTNode , Unit
• getExponentAsDouble() : Unit
• getExtension() : SBMLExtensionRegistry
• getExtensionInternal() : SBMLExtensionRegistry
• getExtentConversionFactor() : Submodel
• getExtentUnits() : Model
• getExternalModelDefinition() : CompSBMLDocumentPlugin
• getFailure() : SBMLValidator
• getFailures() : SBMLValidator , Validator
• getFamilyName() : ModelCreator
• getFast() : Reaction
• getFill() : DefaultValues , GraphicalPrimitive2D
• getFillColor() : GraphicalPrimitive2D
• getFillRule() : DefaultValues , GraphicalPrimitive2D
• getFillRuleAsString() : DefaultValues , GraphicalPrimitive2D
• getFloatValue() : ConversionOption , ConversionProperties
• getFluxBound() : FbcModelPlugin
• getFluxBoundOperation() : FluxBound
• getFluxBoundsForReaction() : FbcModelPlugin
• getFluxObjective() : Objective
• getFocalPointX() : RadialGradient
• getFocalPointY() : RadialGradient
• getFocalPointZ() : RadialGradient
• getFontFamily() : DefaultValues , RenderGroup , Text
• getFontSize() : DefaultValues , RenderGroup , Text
• getFontStyle() : DefaultValues , RenderGroup , Text
• getFontStyleAsString() : DefaultValues , RenderGroup , Text
• getFontWeight() : DefaultValues , RenderGroup , Text
• getFontWeightAsString() : DefaultValues , RenderGroup , Text
• getFormula() : KineticLaw , Rule
• getForwardTransformation() : CSGHomogeneousTransformation
• getFunctionDefinition() : Model
• getFunctionTerm() : Transition
• getFunctionType() : AnalyticVolume
• getFunctionTypeAsString() : AnalyticVolume
• getFx() : RadialGradient
• getFy() : RadialGradient
• getFz() : RadialGradient
• getGeneAssociation() : FbcModelPlugin
• getGeneProduct() : FbcModelPlugin , GeneProductRef
• getGeneProductAssociation() : FbcReactionPlugin
• getGeneProductByLabel() : FbcModelPlugin
• getGeneralGlyph() : Layout
• getGeometry() : SpatialModelPlugin
• getGeometryDefinition() : Geometry , MixedGeometry , OrdinalMapping
• getGivenName() : ModelCreator
• getGlobalStyle() : GlobalRenderInformation
• getGlyphId() : ReferenceGlyph
• getGradientDefinition() : RenderInformationBase
• getGradientStop() : GradientBase
• getGraphicalObjectId() : TextGlyph
• getGreen() : ColorDefinition
• getGroup() : GroupsModelPlugin , LineEnding , Style
• getHasOnlySubstanceUnits() : Species
• getHeight() : Dimensions , Image , Rectangle
• getHost() : SBMLUri
• getHour() : Date
• getHoursOffset() : Date
• getHref() : Image
• getId() : AdjacentDomains , AnalyticVolume , ASTNode , Boundary , BoundingBox , ColorDefinition , Compartment , CompartmentMapping , CompartmentReference , CompartmentType , CoordinateComponent , CSGNode , CSGObject , Deletion , Dimensions , DistribBase , Domain , DomainType , Event , EventAssignment , ExternalModelDefinition , FluxBound , FluxObjective , FunctionDefinition , GeneAssociation , GeneProduct , GeneProductAssociation , GeneProductRef , Geometry , GeometryDefinition , GradientBase , GraphicalObject , GraphicalPrimitive1D , Group , Image , InitialAssignment , Input , InSpeciesTypeBond , KeyValuePair , Layout , LineEnding , ListOfMembers , Member , Model , MultiSpeciesType , Objective , Output , OutwardBindingSite , Parameter , ParametricObject , Point , Port , PossibleSpeciesFeatureValue , QualitativeSpecies , Reaction , RenderInformationBase , Rule , SampledField , SampledVolume , SBase , SimpleSpeciesReference , SpatialPoints , Species , SpeciesFeature , SpeciesFeatureType , SpeciesType , SpeciesTypeComponentIndex , SpeciesTypeComponentMapInProduct , SpeciesTypeInstance , Style , SubListOfSpeciesFeatures , Submodel , Transition , UnitDefinition , UserDefinedConstraint , UserDefinedConstraintComponent , VConstraint
• getIdAttribute() : SBase
• getIdentifyingParent() : SpeciesTypeComponentIndex
• getIdentityMatrix() : Transformation
• getIdentityMatrix2D() : Transformation2D
• getIdList() : LocalStyle
• getIdRef() : Member , SBaseRef
• getImageReference() : Image
• getIndex() : XMLAttributes , XMLNamespaces , XMLNode
• getIndexByPrefix() : XMLNamespaces
• getIndexForReferenceGlyph() : GeneralGlyph
• getIndexForSpeciesReferenceGlyph() : ReactionGlyph
• getIndexForSubGlyph() : GeneralGlyph
• getInitialAmount() : Species
• getInitialAssignment() : Model
• getInitialAssignmentBySymbol() : Model
• getInitialConcentration() : Species
• getInitialLevel() : QualitativeSpecies
• getInitialValue() : Trigger
• getInput() : Transition
• getInputBySpecies() : Transition
• getInSpeciesTypeBond() : MultiSpeciesType
• getInstance() : CallbackRegistry , DefinitionURLRegistry , SBMLConverterRegistry , SBMLExtensionRegistry , SBMLResolverRegistry
• getInstantiation() : Submodel
• getInteger() : ASTNode
• getInteriorPoint() : Domain
• getInterpolationType() : SampledField
• getInterpolationTypeAsString() : SampledField
• getIntValue() : ConversionOption , ConversionProperties
• getIsActive() : GeometryDefinition
• getIsEnabledRotationalMapping() : LineEnding
• getIsLocal() : SpatialReactionPlugin
• getIsSpatial() : SpatialSpeciesPlugin
• getIsType() : MultiCompartmentPlugin
• getItemTypeCode() : ListOf , ListOfAdjacentDomains , ListOfAnalyticVolumes , ListOfColorDefinitions , ListOfCompartmentGlyphs , ListOfCompartmentReferences , ListOfCompartments , ListOfCompartmentTypes , ListOfConstraints , ListOfCoordinateComponents , ListOfCSGNodes , ListOfCSGObjects , ListOfCurveElements , ListOfDeletions , ListOfDomains , ListOfDomainTypes , ListOfDrawables , ListOfEventAssignments , ListOfEvents , ListOfExternalModelDefinitions , ListOfFbcAssociations , ListOfFluxBounds , ListOfFluxObjectives , ListOfFunctionDefinitions , ListOfFunctionTerms , ListOfGeneAssociations , ListOfGeneProducts , ListOfGeometryDefinitions , ListOfGlobalRenderInformation , ListOfGlobalStyles , ListOfGradientDefinitions , ListOfGradientStops , ListOfGraphicalObjects , ListOfGroups , ListOfInitialAssignments , ListOfInputs , ListOfInSpeciesTypeBonds , ListOfInteriorPoints , ListOfKeyValuePairs , ListOfLayouts , ListOfLineEndings , ListOfLineSegments , ListOfLocalParameters , ListOfLocalRenderInformation , ListOfLocalStyles , ListOfMembers , ListOfModelDefinitions , ListOfMultiSpeciesTypes , ListOfObjectives , ListOfOrdinalMappings , ListOfOutputs , ListOfOutwardBindingSites , ListOfParameters , ListOfParametricObjects , ListOfPorts , ListOfPossibleSpeciesFeatureValues , ListOfQualitativeSpecies , ListOfReactionGlyphs , ListOfReactions , ListOfReferenceGlyphs , ListOfReplacedElements , ListOfRules , ListOfSampledFields , ListOfSampledVolumes , ListOfSpecies , ListOfSpeciesFeatures , ListOfSpeciesFeatureTypes , ListOfSpeciesFeatureValues , ListOfSpeciesGlyphs , ListOfSpeciesReferenceGlyphs , ListOfSpeciesReferences , ListOfSpeciesTypeComponentIndexes , ListOfSpeciesTypeComponentMapInProducts , ListOfSpeciesTypeInstances , ListOfSpeciesTypes , ListOfSubmodels , ListOfTextGlyphs , ListOfTransitions , ListOfUncertainties , ListOfUncertParameters , ListOfUnitDefinitions , ListOfUnits , ListOfUserDefinedConstraintComponents , ListOfUserDefinedConstraints , SubListOfSpeciesFeatures
• getKey() : ConversionOption , KeyValuePair
• getKeyValuePair() : FbcSBasePlugin
• getKind() : Group , Unit
• getKindAsString() : Group
• getKineticLaw() : Reaction
• getL1TypeCode() : Rule
• getLabel() : GeneProduct
• getLayout() : LayoutModelPlugin
• getLeftChild() : ASTNode
• getLength() : XMLAttributes , XMLNamespaces
• getLengthUnits() : Model
• getLevel() : CompExtension , DistribExtension , FbcExtension , GroupsExtension , LayoutExtension , MultiExtension , QualExtension , RenderExtension , SBase , SBasePlugin , SBMLExtension , SBMLNamespaces , SpatialExtension
• getLibraryName() : XMLOutputStream
• getLibraryVersion() : XMLOutputStream
• getLine() : SBase , XMLError , XMLToken
• getLinearGradient_x1() : DefaultValues
• getLinearGradient_x2() : DefaultValues
• getLinearGradient_y1() : DefaultValues
• getLinearGradient_y2() : DefaultValues
• getLinearGradient_z1() : DefaultValues
• getLinearGradient_z2() : DefaultValues
• getLineEnding() : RenderInformationBase
• getListCreators() : ModelHistory
• getListModifiedDates() : ModelHistory
• getListNestedCVTerms() : CVTerm
• getListOfAdditionalGraphicalObjects() : Layout
• getListOfAdjacentDomains() : Geometry
• getListOfAnalyticVolumes() : AnalyticGeometry
• getListOfAssociations() : FbcAnd , FbcOr
• getListOfColorDefinitions() : RenderInformationBase
• getListOfCompartmentGlyphs() : Layout
• getListOfCompartmentReferences() : MultiCompartmentPlugin
• getListOfCompartments() : Model
• getListOfCompartmentTypes() : Model
• getListOfConstraints() : Model
• getListOfCoordinateComponents() : Geometry
• getListOfCSGNodes() : CSGSetOperator
• getListOfCSGObjects() : CSGeometry
• getListOfCurveSegments() : Curve
• getListOfDeletions() : Submodel
• getListOfDomains() : Geometry
• getListOfDomainTypes() : Geometry
• getListOfElements() : Polygon , RenderCurve , RenderGroup
• getListOfEventAssignments() : Event
• getListOfEvents() : Model
• getListOfExternalModelDefinitions() : CompSBMLDocumentPlugin
• getListOfFluxBounds() : FbcModelPlugin
• getListOfFluxObjectives() : Objective
• getListOfFunctionDefinitions() : Model
• getListOfFunctionTerms() : Transition
• getListOfGeneAssociations() : FbcModelPlugin
• getListOfGeneProducts() : FbcModelPlugin
• getListOfGeometryDefinitions() : Geometry , MixedGeometry
• getListOfGlobalRenderInformation() : RenderListOfLayoutsPlugin
• getListOfGlobalStyles() : GlobalRenderInformation
• getListOfGradientDefinitions() : RenderInformationBase
• getListOfGradientStops() : GradientBase
• getListOfGroups() : GroupsModelPlugin
• getListOfInitialAssignments() : Model
• getListOfInputs() : Transition
• getListOfInSpeciesTypeBonds() : MultiSpeciesType
• getListOfInteriorPoints() : Domain
• getListOfKeyValuePairs() : FbcSBasePlugin
• getListOfLayouts() : LayoutModelPlugin
• getListOfLineEndings() : RenderInformationBase
• getListOfLocalParameters() : KineticLaw
• getListOfLocalRenderInformation() : RenderLayoutPlugin
• getListOfLocalStyles() : LocalRenderInformation
• getListOfMembers() : Group
• getListOfModelDefinitions() : CompSBMLDocumentPlugin
• getListOfModifiers() : Reaction
• getListOfMultiSpeciesTypes() : MultiModelPlugin
• getListOfNodes() : ASTNode
• getListOfObjectives() : FbcModelPlugin
• getListOfOrdinalMappings() : MixedGeometry
• getListOfOutputs() : Transition
• getListOfOutwardBindingSites() : MultiSpeciesPlugin
• getListOfParameters() : KineticLaw , Model
• getListOfParametricObjects() : ParametricGeometry
• getListOfPorts() : CompModelPlugin
• getListOfPossibleSpeciesFeatureValues() : SpeciesFeatureType
• getListOfProducts() : Reaction
• getListOfQualitativeSpecies() : QualModelPlugin
• getListOfReactants() : Reaction
• getListOfReactionGlyphs() : Layout
• getListOfReactions() : Model
• getListOfReferenceGlyphs() : GeneralGlyph
• getListOfReplacedElements() : CompSBasePlugin
• getListOfRules() : Model
• getListOfSampledFields() : Geometry
• getListOfSampledVolumes() : SampledFieldGeometry
• getListOfSpecies() : Model
• getListOfSpeciesFeatures() : MultiSpeciesPlugin
• getListOfSpeciesFeatureTypes() : MultiSpeciesType
• getListOfSpeciesFeatureValues() : SpeciesFeature
• getListOfSpeciesGlyphs() : Layout
• getListOfSpeciesReferenceGlyphs() : ReactionGlyph
• getListOfSpeciesTypeComponentIndexes() : MultiSpeciesType
• getListOfSpeciesTypeComponentMapInProducts() : MultiSpeciesReferencePlugin
• getListOfSpeciesTypeInstances() : MultiSpeciesType
• getListOfSpeciesTypes() : Model
• getListOfStyles() : GlobalRenderInformation , LocalRenderInformation
• getListOfSubGlyphs() : GeneralGlyph
• getListOfSubmodels() : CompModelPlugin
• getListOfTextGlyphs() : Layout
• getListOfTransitions() : QualModelPlugin
• getListOfUncertainties() : DistribSBasePlugin
• getListOfUncertParameters() : Uncertainty , UncertParameter
• getListOfUnitDefinitions() : Model
• getListOfUnits() : UnitDefinition
• getListOfUserDefinedConstraintComponents() : UserDefinedConstraint
• getListOfUserDefinedConstraints() : FbcModelPlugin
• getLocalParameter() : KineticLaw
• getLocalStyle() : LocalRenderInformation
• getLocationURI() : SBMLDocument
• getLowerBound() : UserDefinedConstraint
• getLowerFluxBound() : FbcReactionPlugin
• getMajorVersion() : ListOfGlobalRenderInformation , ListOfLocalRenderInformation
• getMantissa() : ASTNode
• getMath() : AnalyticVolume , Constraint , Delay , EventAssignment , FunctionDefinition , FunctionTerm , InitialAssignment , KineticLaw , Priority , Rule , StoichiometryMath , Trigger , UncertParameter
• getMathNotSupportedFlag() : SBMLRateRuleConverter
• getMatrix() : Transformation
• getMatrix2D() : Transformation2D
• getMaxLevel() : QualitativeSpecies
• getMaxValue() : SampledVolume
• getMd5() : ExternalModelDefinition
• getMember() : Group
• getMemberByIdRef() : Group
• getMessage() : Constraint , FbcExtension , XMLError
• getMessageString() : Constraint
• getMetaId() : SBase
• getMetaIdRef() : GraphicalObject , Member , SBaseRef
• getMinorVersion() : ListOfGlobalRenderInformation , ListOfLocalRenderInformation
• getMinute() : Date
• getMinutesOffset() : Date
• getMinValue() : SampledVolume
• getModel() : CompSBMLDocumentPlugin , L3ParserSettings , SBase , SBMLDocument , SBMLValidator
• getModelDefinition() : CompSBMLDocumentPlugin
• getModelHistory() : SBase
• getModelQualifierType() : CVTerm
• getModelRef() : ExternalModelDefinition , Submodel
• getModifiedDate() : ModelHistory , SBase
• getModifier() : Reaction
• getModifiers() : SBMLRateRuleConverter
• getModifierSpeciesReference() : Model
• getMonth() : Date
• getMultiplier() : Unit
• getMultiSpeciesType() : MultiModelPlugin
• getName() : AdjacentDomains , AnalyticVolume , ASTNode , Boundary , ColorDefinition , Compartment , CompartmentMapping , CompartmentReference , CompartmentType , CompExtension , CoordinateComponent , CSGNode , CSGObject , Deletion , DistribBase , DistribExtension , Domain , DomainType , Event , ExternalModelDefinition , FbcExtension , FluxBound , FluxObjective , FunctionDefinition , GeneProduct , GeneProductAssociation , GeneProductRef , GeometryDefinition , GradientBase , Group , GroupsExtension , Input , InSpeciesTypeBond , KeyValuePair , Layout , LayoutExtension , ListOfMembers , Member , Model , ModelCreator , MultiExtension , MultiSpeciesType , Objective , Output , OutwardBindingSite , Parameter , ParametricObject , Port , PossibleSpeciesFeatureValue , QualExtension , QualitativeSpecies , Reaction , RenderExtension , RenderInformationBase , SampledField , SampledVolume , SBase , SBMLConverter , SBMLExtension , SimpleSpeciesReference , SpatialExtension , SpatialPoints , Species , SpeciesFeature , SpeciesFeatureType , SpeciesType , SpeciesTypeComponentIndex , SpeciesTypeComponentMapInProduct , SpeciesTypeInstance , Style , SubListOfSpeciesFeatures , Submodel , Transformation , Transition , UnitDefinition , UserDefinedConstraint , UserDefinedConstraintComponent , XMLAttributes , XMLToken , XMLTriple
• getNamespaceIndex() : XMLToken
• getNamespaceIndexByPrefix() : XMLToken
• getNamespacePrefix() : XMLToken
• getNamespaces() : SBase , SBMLDocument , SBMLNamespaces , XMLToken
• getNamespacesLength() : XMLToken
• getNamespaceURI() : XMLToken
• getNegDer() : SBMLRateRuleConverter
• getNestedCVTerm() : CVTerm
• getNotes() : SBase
• getNotesString() : SBase
• getNumAdditionalGraphicalObjects() : Layout
• getNumAdjacentDomains() : Geometry , ListOfAdjacentDomains
• getNumAnalyticVolumes() : AnalyticGeometry , ListOfAnalyticVolumes
• getNumArguments() : FunctionDefinition
• getNumAssociations() : Association , FbcAnd , FbcOr
• getNumASTPlugins() : SBMLExtensionRegistry
• getNumAttributes() : XMLAttributes
• getNumCallbacks() : CallbackRegistry
• getNumChildren() : ASTNode , XMLNode
• getNumColorDefinitions() : ListOfColorDefinitions , RenderInformationBase
• getNumCompartmentGlyphs() : Layout
• getNumCompartmentReferences() : MultiCompartmentPlugin
• getNumCompartments() : Model
• getNumCompartmentTypes() : Model
• getNumConstraints() : Model
• getNumConverters() : SBMLConverterRegistry
• getNumCoordinateComponents() : Geometry , ListOfCoordinateComponents
• getNumCreators() : ModelHistory
• getNumCSGNodes() : CSGSetOperator , ListOfCSGNodes
• getNumCSGObjects() : CSGeometry , ListOfCSGObjects
• getNumCurveSegments() : Curve
• getNumCVTerms() : SBase
• getNumDashes() : GraphicalPrimitive1D
• getNumDefinitionURLs() : DefinitionURLRegistry
• getNumDeletions() : Submodel
• getNumDisabledPlugins() : SBase
• getNumDomains() : Geometry , ListOfDomains
• getNumDomainTypes() : Geometry , ListOfDomainTypes
• getNumElements() : Polygon , RenderCurve , RenderGroup
• getNumerator() : ASTNode
• getNumericValue() : PossibleSpeciesFeatureValue
• getNumErrors() : SBMLDocument , XMLErrorLog
• getNumEventAssignments() : Event
• getNumEvents() : Model
• getNumExtension() : SBMLExtensionRegistry
• getNumExternalModelDefinitions() : CompSBMLDocumentPlugin
• getNumFailsWithSeverity() : SBMLErrorLog
• getNumFailures() : SBMLValidator
• getNumFbcAssociations() : ListOfFbcAssociations
• getNumFluxBounds() : FbcModelPlugin
• getNumFluxObjectives() : ListOfFluxObjectives , Objective
• getNumFunctionDefinitions() : Model
• getNumFunctionTerms() : Transition
• getNumGeneAssociations() : FbcModelPlugin
• getNumGeneProducts() : FbcModelPlugin , ListOfGeneProducts
• getNumGeneralGlyphs() : Layout
• getNumGeometryDefinitions() : Geometry , ListOfGeometryDefinitions , MixedGeometry
• getNumGlobalRenderInformation() : ListOfGlobalRenderInformation
• getNumGlobalRenderInformationObjects() : RenderListOfLayoutsPlugin
• getNumGlobalStyles() : GlobalRenderInformation , ListOfGlobalStyles
• getNumGradientBases() : ListOfGradientDefinitions
• getNumGradientDefinitions() : RenderInformationBase
• getNumGradientStops() : GradientBase , ListOfGradientStops
• getNumGroups() : GroupsModelPlugin , ListOfGroups
• getNumIds() : LocalStyle
• getNumInitialAssignments() : Model
• getNumInputs() : Transition
• getNumInSpeciesTypeBonds() : MultiSpeciesType
• getNumInteriorPoints() : Domain , ListOfInteriorPoints
• getNumKeyValuePairs() : FbcSBasePlugin , ListOfKeyValuePairs
• getNumLayouts() : LayoutModelPlugin
• getNumLineEndings() : ListOfLineEndings , RenderInformationBase
• getNumLocalParameters() : KineticLaw
• getNumLocalRenderInformation() : ListOfLocalRenderInformation
• getNumLocalRenderInformationObjects() : RenderLayoutPlugin
• getNumLocalStyles() : ListOfLocalStyles , LocalRenderInformation
• getNumMembers() : Group , ListOfMembers
• getNumModelDefinitions() : CompSBMLDocumentPlugin
• getNumModifiedDates() : ModelHistory , SBase
• getNumModifiers() : Reaction
• getNumMultiSpeciesTypes() : MultiModelPlugin
• getNumNamespaces() : XMLNamespaces
• getNumNestedCVTerms() : CVTerm
• getNumObjectives() : FbcModelPlugin , ListOfObjectives
• getNumOfSBasePlugins() : SBMLExtension
• getNumOfSupportedPackageURI() : SBasePluginCreatorBase , SBMLExtension
• getNumOptions() : ConversionProperties
• getNumOrdinalMappings() : ListOfOrdinalMappings , MixedGeometry
• getNumOutputs() : Transition
• getNumOutwardBindingSites() : MultiSpeciesPlugin
• getNumParameters() : KineticLaw , Model
• getNumParametricObjects() : ListOfParametricObjects , ParametricGeometry
• getNumPlugins() : SBase
• getNumPorts() : CompModelPlugin
• getNumPossibleSpeciesFeatureValues() : SpeciesFeatureType
• getNumProducts() : Reaction
• getNumQualitativeSpecies() : QualModelPlugin
• getNumReactants() : Reaction
• getNumReactionGlyphs() : Layout
• getNumReactions() : Model
• getNumReferenceGlyphs() : GeneralGlyph
• getNumReferents() : ReplacedElement , SBaseRef
• getNumRegisteredPackages() : SBMLExtensionRegistry
• getNumRenderPoints() : ListOfCurveElements
• getNumReplacedElements() : CompSBasePlugin
• getNumResolvers() : SBMLResolverRegistry
• getNumResources() : CVTerm
• getNumRoles() : Style
• getNumRules() : Model
• getNumSampledFields() : Geometry , ListOfSampledFields
• getNumSampledVolumes() : ListOfSampledVolumes , SampledFieldGeometry
• getNumSamples1() : SampledField
• getNumSamples2() : SampledField
• getNumSamples3() : SampledField
• getNumSemanticsAnnotations() : ASTNode
• getNumSpecies() : Model
• getNumSpeciesFeatures() : ListOfSpeciesFeatures , MultiSpeciesPlugin , SubListOfSpeciesFeatures
• getNumSpeciesFeatureTypes() : MultiSpeciesType
• getNumSpeciesFeatureValues() : SpeciesFeature
• getNumSpeciesGlyphs() : Layout
• getNumSpeciesReferenceGlyphs() : ReactionGlyph
• getNumSpeciesTypeComponentIndexes() : MultiSpeciesType
• getNumSpeciesTypeComponentMapInProducts() : MultiSpeciesReferencePlugin
• getNumSpeciesTypeInstances() : MultiSpeciesType
• getNumSpeciesTypes() : Model
• getNumSpeciesWithBoundaryCondition() : Model
• getNumStyles() : GlobalRenderInformation , LocalRenderInformation
• getNumSubGlyphs() : GeneralGlyph
• getNumSubListOfSpeciesFeatures() : ListOfSpeciesFeatures , MultiSpeciesPlugin
• getNumSubmodels() : CompModelPlugin
• getNumTextGlyphs() : Layout
• getNumTransformation2Ds() : ListOfDrawables
• getNumTransitions() : QualModelPlugin
• getNumTypes() : Style
• getNumUncertainties() : DistribSBasePlugin , ListOfUncertainties
• getNumUncertParameters() : ListOfUncertParameters , Uncertainty , UncertParameter
• getNumUnitDefinitions() : Model
• getNumUnits() : UnitDefinition
• getNumUserDefinedConstraintComponents() : ListOfUserDefinedConstraintComponents , UserDefinedConstraint
• getNumUserDefinedConstraints() : FbcModelPlugin , ListOfUserDefinedConstraints
• getObjective() : FbcModelPlugin
• getObjectiveType() : Objective
• getObjectRole() : RenderGraphicalObjectPlugin
• getOccur() : SpeciesFeature , SpeciesFeatureType
• getOde() : SBMLRateRuleConverter
• getOffset() : GradientStop , Unit
• getOperation() : FluxBound
• getOperationType() : CSGSetOperator
• getOperationTypeAsString() : CSGSetOperator
• getOperatorName() : ASTNode
• getOption() : ConversionProperties
• getOrder() : CompartmentGlyph
• getOrdinal() : AnalyticVolume , CSGObject , OrdinalMapping
• getOrdinalMapping() : MixedGeometry
• getOrdinalMappingByGeometryDefinition() : MixedGeometry
• getOrganisation() : ModelCreator
• getOrganization() : ModelCreator
• getOriginOfTextId() : TextGlyph
• getOutput() : Transition
• getOutputBySpecies() : Transition
• getOutputLevel() : Output
• getOutside() : Compartment
• getOutwardBindingSite() : MultiSpeciesPlugin
• getPackage() : XMLError
• getPackageCoreVersion() : SBase
• getPackageName() : CompBase , CompExtension , DistribExtension , FbcExtension , GroupsExtension , LayoutExtension , MultiExtension , QualExtension , RenderExtension , SBase , SBaseExtensionPoint , SBasePlugin , SBMLExtensionNamespaces< SBMLExtensionType > , SBMLNamespaces , SpatialExtension
• getPackageRequired() : SBMLDocument
• getPackageToStrip() : SBMLStripPackageConverter
• getPackageURI() : CompBase
• getPackageVersion() : CompBase , CompExtension , DistribExtension , FbcExtension , GroupsExtension , LayoutExtension , MultiExtension , QualExtension , RenderExtension , SBase , SBasePlugin , SBMLExtension , SBMLExtensionNamespaces< SBMLExtensionType > , SpatialExtension
• getParameter() : KineticLaw , Model
• getParametricObject() : ParametricGeometry
• getParametricObjectByDomainType() : ParametricGeometry
• getParentModel() : CompBase
• getParentSBMLObject() : ASTNode , SBase , SBasePlugin
• getParseAvogadroCsymbol() : L3ParserSettings
• getParseCollapseMinus() : L3ParserSettings
• getParseL3v2Functions() : L3ParserSettings
• getParseLog() : L3ParserSettings
• getParseModuloL3v2() : L3ParserSettings
• getParsePackageMath() : L3ParserSettings
• getParseUnits() : L3ParserSettings
• getPath() : SBMLUri
• getPersistent() : Trigger
• getPkgRequired() : SBMLDocument
• getPlugin() : SBase
• getPointIndex() : ParametricObject
• getPointIndexLength() : ParametricObject
• getPolygonType() : ParametricObject
• getPolygonTypeAsString() : ParametricObject
• getPort() : CompModelPlugin
• getPortRef() : SBaseRef
• getPosDer() : SBMLRateRuleConverter
• getPosition() : BoundingBox
• getPositionExplicitlySet() : BoundingBox
• getPossibleSpeciesFeatureValue() : SpeciesFeatureType
• getPrecedence() : ASTNode
• getPrefix() : SBase , SBasePlugin , XMLAttributes , XMLNamespaces , XMLToken , XMLTriple
• getPrefixedName() : XMLAttributes , XMLTriple
• getPrimitiveType() : CSGPrimitive
• getPrimitiveTypeAsString() : CSGPrimitive
• getPriority() : Event
• getProduct() : Reaction
• getProductComponent() : SpeciesTypeComponentMapInProduct
• getProducts() : SBMLRateRuleConverter
• getProgramName() : RenderInformationBase
• getProgramVersion() : RenderInformationBase
• getProperties() : SBMLConverter
• getQualifierType() : CVTerm
• getQualitativeSpecies() : Input , Output , QualModelPlugin
• getQuery() : SBMLUri
• getR() : RadialGradient
• getRadialGradient_cx() : DefaultValues
• getRadialGradient_cy() : DefaultValues
• getRadialGradient_cz() : DefaultValues
• getRadialGradient_fx() : DefaultValues
• getRadialGradient_fy() : DefaultValues
• getRadialGradient_fz() : DefaultValues
• getRadialGradient_r() : DefaultValues
• getRadius() : RadialGradient
• getRadiusX() : Rectangle
• getRadiusY() : Rectangle
• getRateRule() : Model
• getRateRuleByVariable() : Model
• getRatio() : Ellipse , Rectangle
• getReactant() : Reaction , SpeciesTypeComponentMapInProduct
• getReactantComponent() : SpeciesTypeComponentMapInProduct
• getReactants() : SBMLRateRuleConverter
• getReaction() : FluxBound , FluxObjective , GeneAssociation , Model
• getReaction2() : FluxObjective
• getReactionGlyph() : Layout
• getReactionId() : ReactionGlyph
• getReal() : ASTNode
• getRed() : ColorDefinition
• getReference() : Association
• getReferencedElement() : SBaseRef
• getReferencedElementFrom() : ReplacedElement , SBaseRef
• getReferencedModel() : ExternalModelDefinition
• getReferenceGlyph() : GeneralGlyph
• getReferenceId() : GeneralGlyph , ReferenceGlyph
• getReferenceRenderInformation() : RenderInformationBase
• getReferenceRenderInformationId() : RenderInformationBase
• getRegisteredPackageName() : SBMLExtensionRegistry
• getRegisteredPackageNames() : SBMLExtensionRegistry
• getRelation() : SubListOfSpeciesFeatures
• getRelativeValue() : RelAbsVector
• getRenderInformation() : RenderLayoutPlugin , RenderListOfLayoutsPlugin
• getReplacedBy() : CompSBasePlugin
• getReplacedElement() : CompSBasePlugin
• getRepresentationType() : MultiASTPlugin
• getRequired() : SBMLDocumentPlugin
• getResolvedURI() : CompSBMLDocumentPlugin
• getResolverByIndex() : SBMLResolverRegistry
• getResourceBiologicalQualifier() : SBase
• getResourceModelQualifier() : SBase
• getResources() : CVTerm
• getResourceURI() : CVTerm
• getResultLevel() : DefaultTerm , FunctionTerm
• getReversible() : Reaction
• getRightChild() : ASTNode
• getRole() : ReferenceGlyph , SpeciesReferenceGlyph
• getRoleList() : Style
• getRoleString() : SpeciesReferenceGlyph
• getRotateAngleInRadians() : CSGRotation
• getRotateX() : CSGRotation
• getRotateY() : CSGRotation
• getRotateZ() : CSGRotation
• getRule() : Model
• getRuleByVariable() : Model
• getRX() : Ellipse , Rectangle
• getRY() : Ellipse , Rectangle
• getSampledField() : Geometry , SampledFieldGeometry
• getSampledValue() : SampledVolume
• getSampledVolume() : SampledFieldGeometry
• getSampledVolumeByDomainType() : SampledFieldGeometry
• getSamples() : SampledField
• getSamplesLength() : SampledField
• getSBaseRef() : SBaseRef
• getSBMLDocument() : SBase , SBasePlugin
• getSBMLErrMsg() : SBMLConstructorException
• getSBMLExtensionNamespaces() : CompExtension , DistribExtension , FbcExtension , GroupsExtension , LayoutExtension , MultiExtension , QualExtension , RenderExtension , SBMLExtension , SpatialExtension
• getSBMLNamespaces() : XMLInputStream , XMLOutputStream
• getSBMLNamespaceURI() : SBMLNamespaces
• getSBOTerm() : SBase
• getSBOTermAsURL() : SBase
• getSBOTermID() : SBase
• getScale() : Unit
• getScaleX() : CSGScale
• getScaleY() : CSGScale
• getScaleZ() : CSGScale
• getScheme() : SBMLUri
• getSecond() : Date
• getSemanticsAnnotation() : ASTNode
• getSeverity() : FbcExtension , VConstraint , XMLError
• getSeverityAsString() : XMLError
• getSeverityOverride() : XMLErrorLog
• getShortMessage() : FbcExtension , XMLError
• getSign() : Input
• getSignOffset() : Date
• getSize() : Compartment , List
• getSource() : ExternalModelDefinition
• getSpatialDimensions() : Compartment , DomainType
• getSpatialDimensionsAsDouble() : Compartment
• getSpatialPoints() : ParametricGeometry
• getSpatialRef() : SpatialSymbolReference
• getSpatialSizeUnits() : Species
• getSpatialSymbolReference() : SpatialParameterPlugin
• getSpecies() : Model , SimpleSpeciesReference
• getSpeciesFeature() : MultiSpeciesPlugin
• getSpeciesFeatureType() : MultiSpeciesType , SpeciesFeature
• getSpeciesFeatureValue() : SpeciesFeature
• getSpeciesGlyph() : Layout
• getSpeciesGlyphId() : SpeciesReferenceGlyph
• getSpeciesId() : SpeciesGlyph
• getSpeciesReference() : Model , MultiASTPlugin
• getSpeciesReferenceGlyph() : ReactionGlyph
• getSpeciesReferenceId() : SpeciesReferenceGlyph
• getSpeciesType() : Model , MultiSpeciesPlugin , Species , SpeciesTypeInstance
• getSpeciesTypeComponentIndex() : MultiSpeciesType
• getSpeciesTypeComponentMapInProduct() : MultiSpeciesReferencePlugin
• getSpeciesTypeInstance() : MultiSpeciesType
• getSpreadMethod() : DefaultValues , GradientBase
• getSpreadMethodAsString() : DefaultValues , GradientBase
• getSpreadMethodString() : GradientBase
• getStandardMessage() : XMLError
• getStart() : LineSegment
• getStartHead() : DefaultValues , RenderCurve , RenderGroup
• getStoichiometry() : SpeciesReference
• getStoichiometryMath() : SpeciesReference
• getStopColor() : GradientStop
• getStrict() : FbcModelPlugin , FbcV1ToV2Converter
• getStringFromTypeCode() : CompExtension , DistribExtension , FbcExtension , GroupsExtension , LayoutExtension , MultiExtension , QualExtension , RenderExtension , SBMLExtension , SpatialExtension
• getStroke() : DefaultValues , GraphicalPrimitive1D
• getStrokeDashArray() : GraphicalPrimitive1D
• getStrokeWidth() : DefaultValues , GraphicalPrimitive1D
• getStyle() : ASTNode , GlobalRenderInformation , LocalRenderInformation
• getSubGlyph() : GeneralGlyph
• getSubListOfSpeciesFeatures() : ListOfSpeciesFeatures , MultiSpeciesPlugin
• getSubmodel() : CompModelPlugin
• getSubmodelRef() : Replacing
• getSubstanceConversionFactor() : Submodel
• getSubstanceUnits() : KineticLaw , Model , Species
• getSupportedNamespaces() : SBMLNamespaces
• getSupportedPackageURI() : SBasePluginCreatorBase , SBMLExtension
• getSymbol() : InitialAssignment
• getTargetExtensionPoint() : SBasePluginCreatorBase
• getTargetLevel() : SBMLLevelVersionConverter
• getTargetNamespaces() : ConversionProperties , SBMLConverter
• getTargetPackageName() : SBasePluginCreatorBase
• getTargetSBMLTypeCode() : SBasePluginCreatorBase
• getTargetVersion() : SBMLLevelVersionConverter
• getText() : Text , TextGlyph
• getTextAnchor() : DefaultValues , RenderGroup , Text
• getTextAnchorAsString() : DefaultValues , RenderGroup , Text
• getTextGlyph() : Layout
• getThresholdLevel() : Input
• getTimeConversionFactor() : Submodel
• getTimeUnits() : Event , KineticLaw , Model
• getToFunctionDefinition() : SBMLRateOfConverter
• getTransform() : Transformation
• getTransformer() : CompModelPlugin
• getTransition() : QualModelPlugin
• getTransitionEffect() : Input , Output
• getTranslateX() : CSGTranslation
• getTranslateY() : CSGTranslation
• getTranslateZ() : CSGTranslation
• getTrigger() : Event
• getType() : Association , ASTNode , BoundaryCondition , ConversionOption , ConversionProperties , CoordinateComponent , DefinitionURLRegistry , DiffusionCoefficient , Objective , Rule , SpatialParameterPlugin , UncertParameter
• getTypeAsString() : BoundaryCondition , CoordinateComponent , DiffusionCoefficient , UncertParameter
• getTypeCode() : AdjacentDomains , AdvectionCoefficient , AnalyticGeometry , AnalyticVolume , Association , BindingSiteSpeciesType , Boundary , BoundaryCondition , BoundingBox , ColorDefinition , Compartment , CompartmentGlyph , CompartmentMapping , CompartmentReference , CompartmentType , Constraint , CoordinateComponent , CSGeometry , CSGHomogeneousTransformation , CSGNode , CSGObject , CSGPrimitive , CSGRotation , CSGScale , CSGSetOperator , CSGTransformation , CSGTranslation , CubicBezier , Curve , DefaultTerm , DefaultValues , Delay , Deletion , DiffusionCoefficient , Dimensions , DistribBase , Domain , DomainType , Ellipse , Event , EventAssignment , ExternalModelDefinition , FbcAnd , FbcAssociation , FbcOr , FluxBound , FluxObjective , FunctionDefinition , FunctionTerm , GeneAssociation , GeneProduct , GeneProductAssociation , GeneProductRef , GeneralGlyph , Geometry , GeometryDefinition , GlobalRenderInformation , GlobalStyle , GradientBase , GradientStop , GraphicalObject , GraphicalPrimitive1D , GraphicalPrimitive2D , Group , Image , InitialAssignment , Input , InSpeciesTypeBond , InteriorPoint , IntraSpeciesReaction , KeyValuePair , KineticLaw , Layout , LinearGradient , LineEnding , LineSegment , ListOf , ListOfAdjacentDomains , ListOfAnalyticVolumes , ListOfColorDefinitions , ListOfCompartmentReferences , ListOfCoordinateComponents , ListOfCSGNodes , ListOfCSGObjects , ListOfCurveElements , ListOfDomains , ListOfDomainTypes , ListOfDrawables , ListOfFbcAssociations , ListOfFluxObjectives , ListOfGeneProducts , ListOfGeometryDefinitions , ListOfGlobalRenderInformation , ListOfGlobalStyles , ListOfGradientDefinitions , ListOfGradientStops , ListOfGroups , ListOfInSpeciesTypeBonds , ListOfInteriorPoints , ListOfKeyValuePairs , ListOfLineEndings , ListOfLocalRenderInformation , ListOfLocalStyles , ListOfMembers , ListOfMultiSpeciesTypes , ListOfObjectives , ListOfOrdinalMappings , ListOfOutwardBindingSites , ListOfParametricObjects , ListOfPossibleSpeciesFeatureValues , ListOfSampledFields , ListOfSampledVolumes , ListOfSpeciesFeatures , ListOfSpeciesFeatureTypes , ListOfSpeciesFeatureValues , ListOfSpeciesTypeComponentIndexes , ListOfSpeciesTypeComponentMapInProducts , ListOfSpeciesTypeInstances , ListOfUncertainties , ListOfUncertParameters , ListOfUserDefinedConstraintComponents , ListOfUserDefinedConstraints , LocalParameter , LocalRenderInformation , LocalStyle , Member , MixedGeometry , Model , ModelDefinition , ModifierSpeciesReference , MultiSpeciesType , Objective , OrdinalMapping , Output , OutwardBindingSite , Parameter , ParametricGeometry , ParametricObject , Point , Polygon , Port , PossibleSpeciesFeatureValue , Priority , QualitativeSpecies , RadialGradient , Reaction , ReactionGlyph , Rectangle , ReferenceGlyph , RenderCubicBezier , RenderCurve , RenderGroup , RenderInformationBase , RenderPoint , ReplacedBy , ReplacedElement , Rule , SampledField , SampledFieldGeometry , SampledVolume , SBase , SBaseExtensionPoint , SBaseRef , SBMLDocument , SpatialPoints , SpatialSymbolReference , Species , SpeciesFeature , SpeciesFeatureType , SpeciesFeatureValue , SpeciesGlyph , SpeciesReference , SpeciesReferenceGlyph , SpeciesType , SpeciesTypeComponentIndex , SpeciesTypeComponentMapInProduct , SpeciesTypeInstance , StoichiometryMath , Style , SubListOfSpeciesFeatures , Submodel , Text , TextGlyph , Transformation2D , Transformation , TransformationComponent , Transition , Trigger , Uncertainty , UncertParameter , UncertSpan , Unit , UnitDefinition , UserDefinedConstraint , UserDefinedConstraintComponent
• getTypeList() : Style
• getUncertainty() : DistribSBasePlugin
• getUncertParameter() : Uncertainty , UncertParameter
• getUncertParameterByType() : Uncertainty
• getUncertParameterByVar() : Uncertainty , UncertParameter
• getUncompressed() : ParametricObject , SampledField , SpatialPoints
• getUncompressedData() : ParametricObject , SampledField , SpatialPoints
• getUncompressedLength() : ParametricObject , SampledField , SpatialPoints
• getUnit() : CoordinateComponent , UnitDefinition
• getUnitDefinition() : Model
• getUnitDefinitionFromPackage() : DistribASTPlugin
• getUnitRef() : SBaseRef
• getUnits() : ASTNode , Compartment , Parameter , Rule , Species , UncertParameter
• getUnitSize() : CompartmentMapping
• getUpperBound() : UserDefinedConstraint
• getUpperFluxBound() : FbcReactionPlugin
• getURI() : CompExtension , DistribExtension , FbcExtension , GroupsExtension
• getUri() : KeyValuePair
• getURI() : LayoutExtension , MultiExtension , QualExtension , RenderExtension , SBase , SBasePlugin , SBMLExtension , SBMLExtensionNamespaces< SBMLExtensionType > , SBMLNamespaces
• getUri() : SBMLUri
• getURI() : SpatialExtension , XMLAttributes , XMLNamespaces , XMLToken , XMLTriple
• getUserData() : ASTNode , ElementFilter , SBase
• getUserDefinedConstraint() : FbcModelPlugin
• getUserDefinedConstraintByLowerBound() : FbcModelPlugin
• getUserDefinedConstraintByUpperBound() : FbcModelPlugin
• getUserDefinedConstraintComponent() : UserDefinedConstraint
• getUserDefinedConstraintComponentByVariable() : UserDefinedConstraint
• getUseValuesFromTriggerTime() : Event
• getValidityFlag() : SBMLLevelVersionConverter
• getValue() : ASTNode , Boundary , ColorDefinition , ConversionOption , ConversionProperties , FluxBound , KeyValuePair , Parameter , SpeciesFeatureValue , UncertParameter , XMLAttributes
• getValueLower() : UncertSpan
• getValueUpper() : UncertSpan
• getVar() : UncertParameter
• getVariable() : AdvectionCoefficient , BoundaryCondition , DiffusionCoefficient , EventAssignment , Rule , UserDefinedConstraintComponent
• getVariable2() : UserDefinedConstraintComponent
• getVariableType() : FluxObjective , UserDefinedConstraintComponent
• getVariableTypeAsString() : FluxObjective , UserDefinedConstraintComponent
• getVarLower() : UncertSpan
• getVarUpper() : UncertSpan
• getVersion() : CompExtension , DistribExtension , FbcExtension , GroupsExtension , LayoutExtension , MultiExtension , QualExtension , RenderExtension , SBase , SBasePlugin , SBMLExtension , SBMLNamespaces , SpatialExtension , XMLInputStream
• getVersionString() : ListOfGlobalRenderInformation , ListOfLocalRenderInformation
• getVolume() : Compartment
• getVolumeUnits() : Model
• getVTextAnchor() : DefaultValues , RenderGroup , Text
• getVTextAnchorAsString() : DefaultValues , RenderGroup , Text
• getWidth() : Dimensions , Image , Rectangle
• getWriteComment() : XMLOutputStream
• getWriteTimestamp() : XMLOutputStream
• getX() : Image , Rectangle , RenderPoint , Text
• getX1() : LinearGradient
• getX2() : LinearGradient
• getXmlns() : ListOfKeyValuePairs
• getXmlnsL2() : LayoutExtension , RenderExtension
• getXmlnsL3V1V1() : CompExtension , DistribExtension , FbcExtension , GroupsExtension , LayoutExtension , MultiExtension , QualExtension , RenderExtension , SpatialExtension
• getXmlnsL3V1V2() : FbcExtension
• getXmlnsL3V1V3() : FbcExtension
• getXmlnsXSI() : LayoutExtension
• getXOffset() : Point
• getXPoint1() : LinearGradient
• getXPoint2() : LinearGradient
• getY() : Image , Rectangle , RenderPoint , Text
• getY1() : LinearGradient
• getY2() : LinearGradient
• getYear() : Date
• getYOffset() : Point
• getYPoint1() : LinearGradient
• getYPoint2() : LinearGradient
• getZ() : Image , Rectangle , RenderPoint , Text
• getZ1() : LinearGradient
• getZ2() : LinearGradient
• getZOffset() : Point
• getZOffsetExplicitlySet() : Point
• getZPoint1() : LinearGradient
• getZPoint2() : LinearGradient
• GlobalRenderInformation() : GlobalRenderInformation
• GlobalStyle() : GlobalStyle
• GradientBase() : GradientBase , ListOfGradientStops
• GradientStop() : GradientStop
• GraphicalObject() : GraphicalObject
• GraphicalPrimitive1D() : GraphicalPrimitive1D
• GraphicalPrimitive2D() : GraphicalPrimitive2D
• Group() : Group
• GroupsExtension() : GroupsExtension
• GroupsModelPlugin() : GroupsModelPlugin
• GroupsSBMLDocumentPlugin() : GroupsSBMLDocumentPlugin
• GroupsValidator() : GroupsValidator