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Generated by JDiff |
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| PREV CLASS NEXT CLASS FRAMES NO FRAMES | DETAIL: CONSTRUCTORS | METHODS | FIELDS | |||||||
Added interface org.sbml.jsbml.util.IdManager.
| Added Methods | |
boolean accept(SBase) |
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boolean containsReaction(String) |
Returns {@code true} if this Model contains a reference to the given Reaction. |
Species createSpecies(String, |
Creates a new Species inside this Model and returns it. |
UnitDefinition findIdentical(UnitDefinition) |
Searches the first UnitDefinition within this Model's .listOfUnitDefinitions that is identical to the given UnitDefinition. |
int getCompartmentCount() |
Returns the number of Compartments of this Model. |
int getCompartmentTypeCount() |
Returns the number of CompartmentTypes of this Model. |
int getConstraintCount() |
Returns the number of Constraints of this Model. |
int getDelayCount() |
Returns the number of Delays of this Model. |
int getEventAssignmentCount() |
Returns the number of EventAssignments of this Model. |
int getEventCount() |
Returns the number of Events of this Model. |
int getFunctionDefinitionCount() |
Returns the number of FunctionDefinitions of this Model. |
int getInitialAssignmentCount() |
Returns the number of InitialAssignments of this Model. |
int getKineticLawCount() |
Returns the number of KineticLaws of this Model. |
int getListOfCount() |
Returns the number of ListOfs of this Model. |
int getLocalParameterCount() |
Returns the number of parameters that are contained within kineticLaws in the reactions of this model. |
int getMathContainerCount() |
Returns the number of elements that can contain math in the Model . |
int getModifierSpeciesReferenceCount() |
Returns the number of ModifierSpeciesReferences in the Model. |
Set<ModifierSpeciesReference> getModifierSpeciesReferences() |
Returns all ModifierSpeciesReferences, registered in any Reaction. |
int getNamedSBaseCount() |
Returns the number of NamedSBases in the Model, so elements that can have a name. |
int getNamedSBaseWithDerivedUnitCount() |
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int getParameterCount() |
Returns the number of Parameters of this Model. |
int getQuantityCount() |
Returns the number of Quantitys of this Model. |
int getQuantityWithUnitCount() |
Returns the number of QuantityWithUnits of this Model. |
int getReactionCount() |
Returns the number of Reactions of this Model. |
int getRuleCount() |
Returns the number of Rules of this Model. |
int getSBaseCount() |
Returns the number of SBases of this Model. |
int getSBaseWithDerivedUnitCount() |
Returns the number of SBaseWithDerivedUnits of this Model. |
int getSpeciesCount() |
Returns the number of Species of this Model. |
int getSpeciesReferenceCount() |
Returns the number of SpeciesReferences of this Model. |
int getSpeciesTypeCount() |
Returns the number of SpeciesTypes of this Model. |
int getSpeciesWithBoundaryConditionCount() |
Returns the number of Species whose boundary condition is set to {@code true}. |
int getStoichiometryMathCount() |
Returns the number of StoichiometryMath in the Model. |
int getSymbolCount() |
Returns the number of all instances of Symbol referenced within the model. |
int getTriggerCount() |
Returns the number of Trigger of this Model. |
int getUnitCount() |
Returns the number of Units of this Model. |
int getUnitDefinitionCount() |
Returns the number of UnitDefinitions of this Model. |
int getVariableCount() |
Returns the number of Variables of this Model. |
boolean register(SBase) |
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UniqueNamedSBase remove(String) |
Removes any UniqueNamedSBase with the given identifier from this Model and returns the removed element if the operation was successfull. |
boolean removeRule(Rule) |
Removes a Rule from the Model. |
void setAreaUnits(Kind) |
@param kind |
void setExtentUnits(Kind) |
@param kind |
void setLengthUnits(Kind) |
@param kind |
void setSubstanceUnits(Kind) |
@param kind |
void setTimeUnits(Kind) |
Sets the .timeUnitsID of this Model to the given unit kind. |
void setVolumeUnits(Kind) |
@param kind |
| Changed Methods | ||
SBase getParent() |
Change in return type from SBMLDocument to SBase.Method was locally defined, but is now inherited from AbstractSBase. |
This is equivalent to calling .getParentSBMLObject(), but this method is needed for TreeNode. |
boolean unregister(SBase) |
Change in return type from void to boolean.Method was inherited from AbstractSBase, but is now defined locally. |
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SpeciesType createSpeciesType() |
Now deprecated. |
Only valid in SBML Level 2 for Versions 2 through 4. |
SpeciesType createSpeciesType(String) |
Now deprecated. |
Only valid in SBML Level 2 for Versions 2 through 4. |
CompartmentType getCompartmentType(int) |
Now deprecated. |
Only valid in SBML Level 2 for Versions 2 through 4. |
CompartmentType getCompartmentType(String) |
Now deprecated. |
Only valid in SBML Level 2 for Versions 2 through 4. |
SpeciesType getSpeciesType(int) |
Now deprecated. |
Only valid in SBML Level 2 for Versions 2 through 4. |
SpeciesType getSpeciesType(String) |
Now deprecated. |
Only valid in SBML Level 2 for Versions 2 through 4. |
CompartmentType removeCompartmentType(int) |
Now deprecated. |
Only valid in SBML Level 2 for Versions 2 through 4. |
CompartmentType removeCompartmentType(String) |
Now deprecated. |
Only valid in SBML Level 2 for Versions 2 through 4. |
SpeciesType removeSpeciesType(int) |
Now deprecated. |
Only valid in SBML Level 2 for Versions 2 through 4. |
SpeciesType removeSpeciesType(String) |
Now deprecated. |
Only valid in SBML Level 2 for Versions 2 through 4. |
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