org.sbml.jsbml.xml.parsers
public class SBMLCoreParser extends java.lang.Object implements ReadingParser, WritingParser
ReadingParser
and WritingParser
).Modifier and Type | Field and Description |
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private org.apache.log4j.Logger |
log4jLogger
Log4j logger
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private XMLLogger |
logger
The logger of this parser
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private java.util.HashMap<java.lang.String,java.lang.Class<? extends java.lang.Object>> |
sbmlCoreElements
This map contains all the relationships XML element name <=> matching
java class.
|
Constructor and Description |
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SBMLCoreParser()
Creates a SBMLCoreParser instance.
|
Modifier and Type | Method and Description |
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java.util.ArrayList<java.lang.Object> |
getListOfSBMLElementsToWrite(java.lang.Object sbase)
Returns the list of children of the
objectToWrite . |
XMLLogger |
getLogger() |
java.lang.String |
getNamespaceURI() |
void |
processAttribute(java.lang.String elementName,
java.lang.String attributeName,
java.lang.String value,
java.lang.String prefix,
boolean isLastAttribute,
java.lang.Object contextObject)
Process the XML attribute and modify 'contextObject' in consequence.
|
void |
processCharactersOf(java.lang.String elementName,
java.lang.String characters,
java.lang.Object contextObject)
Process the text of a XML element and modify 'contextObject' in consequence.
|
void |
processEndDocument(SBMLDocument sbmlDocument)
Process the end of the document.
|
boolean |
processEndElement(java.lang.String elementName,
java.lang.String prefix,
boolean isNested,
java.lang.Object contextObject)
Process the end of the element 'elementName'.
|
void |
processNamespace(java.lang.String elementName,
java.lang.String URI,
java.lang.String prefix,
java.lang.String localName,
boolean hasAttributes,
boolean isLastNamespace,
java.lang.Object contextObject)
Process the namespace and modify the contextObject in consequence.
|
java.lang.Object |
processStartElement(java.lang.String elementName,
java.lang.String prefix,
boolean hasAttributes,
boolean hasNamespaces,
java.lang.Object contextObject)
Process the XML element and modify 'contextObject' in consequence.
|
private void |
setLevelAndVersionFor(java.lang.Object newContextObject,
SBase parent)
Sets level and version properties of the new object according to the
value in the model.
|
void |
setLogger(XMLLogger logger) |
void |
writeAttributes(SBMLObjectForXML xmlObject,
java.lang.Object sbmlElementToWrite)
Adds the XML attributes of the
sbmlElementToWrite to the attributes
HashMap of the xmlObject . |
void |
writeCharacters(SBMLObjectForXML xmlObject,
java.lang.Object sbmlElementToWrite)
Sets the characters of xmlObject depending on the sbml element to write.
|
void |
writeElement(SBMLObjectForXML xmlObject,
java.lang.Object sbmlElementToWrite)
Sets the name of xmlObject (if it is not set) to the element name of
sbmlElementToWrite.
|
void |
writeNamespaces(SBMLObjectForXML xmlObject,
java.lang.Object sbmlElementToWrite)
Sets the namespace of xmlObject (if it is not set) to the namespace of
sbmlElementToWrite.
|
private java.util.HashMap<java.lang.String,java.lang.Class<? extends java.lang.Object>> sbmlCoreElements
private XMLLogger logger
private org.apache.log4j.Logger log4jLogger
public SBMLCoreParser()
public java.util.ArrayList<java.lang.Object> getListOfSBMLElementsToWrite(java.lang.Object sbase)
WritingParser
objectToWrite
.getListOfSBMLElementsToWrite
in interface WritingParser
sbase
- : the SBase
component to write.SBase
' contains. Represents
the list of subNodes of this SBase
component.public XMLLogger getLogger()
public java.lang.String getNamespaceURI()
public void processAttribute(java.lang.String elementName, java.lang.String attributeName, java.lang.String value, java.lang.String prefix, boolean isLastAttribute, java.lang.Object contextObject)
ReadingParser
processAttribute
in interface ReadingParser
elementName
- : the localName of the XML element.attributeName
- : the attribute localName of the XML element.value
- : the value of the XML attribute.prefix
- : the attribute prefixisLastAttribute
- : boolean value to know if this attribute is the last attribute of the XML element.contextObject
- : the object to set or modify depending on the identity of the current attribute. This object
represents the context of the XML attribute in the SBMLDocument.public void processCharactersOf(java.lang.String elementName, java.lang.String characters, java.lang.Object contextObject)
ReadingParser
processCharactersOf
in interface ReadingParser
elementName
- : the localName of the XML element.characters
- : the text of this XML element.contextObject
- : the object to set or modify depending on the identity of the current element. This object
represents the context of the XML element in the SBMLDocument.public void processEndDocument(SBMLDocument sbmlDocument)
ReadingParser
processEndDocument
in interface ReadingParser
sbmlDocument
- : the final initialised SBMLDocument instance.public boolean processEndElement(java.lang.String elementName, java.lang.String prefix, boolean isNested, java.lang.Object contextObject)
ReadingParser
processEndElement
in interface ReadingParser
elementName
- : the localName of the XML element.prefix
- : the prefix of the XML element.isNested
- : boolean value to know if the XML element is a nested element.contextObject
- : the object to set or modify depending on the identity of the current element. This object
represents the context of the XML element in the SBMLDocument.public void processNamespace(java.lang.String elementName, java.lang.String URI, java.lang.String prefix, java.lang.String localName, boolean hasAttributes, boolean isLastNamespace, java.lang.Object contextObject)
ReadingParser
processNamespace
in interface ReadingParser
elementName
- : the localName of the XML element.URI
- : the URI of the namespaceprefix
- : the prefix of the namespace.localName
- : the localName of the namespace.hasAttributes
- : boolean value to know if there are attributes after the namespace declarations.isLastNamespace
- : boolean value to know if this namespace is the last namespace of this element.contextObject
- : the object to set or modify depending on the identity of the current element. This object
represents the context of the XML element in the SBMLDocument.public java.lang.Object processStartElement(java.lang.String elementName, java.lang.String prefix, boolean hasAttributes, boolean hasNamespaces, java.lang.Object contextObject)
ReadingParser
processStartElement
in interface ReadingParser
elementName
- : the localName of the XML element to processprefix
- : the prefix of the XML element to processhasAttributes
- : boolean value to know if this XML element has attributes.hasNamespaces
- : boolean value to know if this XML element contains namespace declarations.contextObject
- : the object to set or modify depending on the identity of the current XML element. This object
represents the context of the XML element in the SBMLDocument.private void setLevelAndVersionFor(java.lang.Object newContextObject, SBase parent)
newContextObject
- parent
- public void setLogger(XMLLogger logger)
logger
- the logger to setpublic void writeAttributes(SBMLObjectForXML xmlObject, java.lang.Object sbmlElementToWrite)
WritingParser
sbmlElementToWrite
to the attributes
HashMap of the xmlObject
.writeAttributes
in interface WritingParser
xmlObject
- : contains the XML information about sbmlElement.sbmlElementToWrite
- : the SBase
component to writepublic void writeCharacters(SBMLObjectForXML xmlObject, java.lang.Object sbmlElementToWrite)
WritingParser
writeCharacters
in interface WritingParser
xmlObject
- : contains the XML information about sbmlElement.sbmlElementToWrite
- : the SBase
component to writepublic void writeElement(SBMLObjectForXML xmlObject, java.lang.Object sbmlElementToWrite)
WritingParser
writeElement
in interface WritingParser
xmlObject
- : contains the XML information about sbmlElement.sbmlElementToWrite
- : the SBase
component to writepublic void writeNamespaces(SBMLObjectForXML xmlObject, java.lang.Object sbmlElementToWrite)
WritingParser
writeNamespaces
in interface WritingParser
xmlObject
- : contains the XML information about sbmlElement.sbmlElementToWrite
- : the SBase
component to write