org.sbml.jsbml.ext.fbc
public class FluxObjective extends AbstractNamedSBase implements UniqueNamedSBase
Modifier and Type | Field and Description |
---|---|
private double |
coefficient |
private boolean |
isSetCoefficient |
private java.lang.String |
reaction |
private static long |
serialVersionUID |
ignoredExtensions, ignoredXMLElements
listOfListeners, parent, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS
Constructor and Description |
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FluxObjective()
Creates an FluxObjective instance
|
FluxObjective(FluxObjective obj)
Clone constructor
|
FluxObjective(int level,
int version)
Creates a FluxObjective instance with a level and version.
|
FluxObjective(java.lang.String id)
Creates a FluxObjective instance with an id.
|
FluxObjective(java.lang.String id,
int level,
int version)
Creates a FluxObjective instance with an id, level, and version.
|
FluxObjective(java.lang.String id,
java.lang.String name,
int level,
int version)
Creates a FluxObjective instance with an id, name, level, and version.
|
Modifier and Type | Method and Description |
---|---|
FluxObjective |
clone()
clones this class
|
double |
getCoefficient()
Returns the value of coefficient
|
java.lang.String |
getReaction()
Returns the value of reaction
|
void |
initDefaults()
Initializes the default values using the namespace.
|
boolean |
isIdMandatory()
This method can be used to query if the identifier of this
NamedSBase is required to be defined (i.e., not null )
in the definition of SBML. |
boolean |
isSetCoefficient()
Returns whether coefficient is set
|
boolean |
isSetReaction()
Returns whether reaction is set
|
boolean |
readAttribute(java.lang.String attributeName,
java.lang.String prefix,
java.lang.String value)
If the attribute is an id or name attribute, it will set the id or name
of this object with the value of the XML attribute ('value').
|
void |
setCoefficient(double coefficient)
Sets the value of coefficient
|
void |
setReaction(Reaction reaction) |
void |
setReaction(java.lang.String reaction) |
boolean |
unsetCoefficient()
Unsets the variable coefficient
|
boolean |
unsetReaction()
Unsets the variable reaction
|
java.util.Map<java.lang.String,java.lang.String> |
writeXMLAttributes() |
equals, getId, getName, hashCode, isSetId, isSetName, isValidId, setId, setName, toString, unsetId, unsetName
addCVTerm, addDeclaredNamespace, addExtension, appendNotes, appendNotes, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, getAllowsChildren, getAnnotation, getAnnotationString, getChildAt, getChildCount, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParent, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, setAnnotation, setHistory, setLevel, setMetaId, setNamespace, setNotes, setNotes, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregister, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, firePropertyChange, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet
finalize, getClass, notify, notifyAll, wait, wait, wait
getId, getName, isSetId, isSetName, setId, setName, unsetId, unsetName
addCVTerm, addDeclaredNamespace, addExtension, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, equals, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hashCode, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeTreeNodeChangeListener, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregister, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm
addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet
private static final long serialVersionUID
private double coefficient
private boolean isSetCoefficient
private java.lang.String reaction
public FluxObjective()
public FluxObjective(int level, int version)
level
- version
- public FluxObjective(java.lang.String id)
id
- public FluxObjective(java.lang.String id, int level, int version)
id
- level
- version
- public FluxObjective(java.lang.String id, java.lang.String name, int level, int version)
id
- name
- level
- version
- public FluxObjective(FluxObjective obj)
public FluxObjective clone()
clone
in interface SBase
clone
in class AbstractSBase
public double getCoefficient()
public java.lang.String getReaction()
public boolean isSetReaction()
public void initDefaults()
public boolean isIdMandatory()
NamedSBase
NamedSBase
is required to be defined (i.e., not null
)
in the definition of SBML.isIdMandatory
in interface NamedSBase
true
if the identifier of this element must be set in
order to create a valid SBML representation. false
otherwise, i.e., if the identifier can be understood as an optional
attribute.public boolean isSetCoefficient()
public boolean readAttribute(java.lang.String attributeName, java.lang.String prefix, java.lang.String value)
SBase
readAttribute
in interface SBase
readAttribute
in class AbstractNamedSBase
attributeName
- localName of the XML attributeprefix
- prefix of the XML attributevalue
- value of the XML attributetrue
if the attribute has been successfully read.public void setCoefficient(double coefficient)
coefficient
- the coefficient to setpublic void setReaction(Reaction reaction)
reaction
- public void setReaction(java.lang.String reaction)
reaction
- the reaction to setpublic boolean unsetCoefficient()
true
, if coefficient was set before,
otherwise false
public boolean unsetReaction()
true
, if reaction was set before,
otherwise false
public java.util.Map<java.lang.String,java.lang.String> writeXMLAttributes()
writeXMLAttributes
in interface SBase
writeXMLAttributes
in class AbstractNamedSBase
Map
containing the XML attributes of this object.