- a -

• accept() : LinearGradient
• add() : List , XMLAttributes , XMLNamespaces
• addAdditionalDir() : SBMLFileResolver
• addAdditionalGraphicalObject() : Layout
• addAssociation() : Association , FbcAnd , FbcOr
• addAttr() : XMLToken
• addChild() : ASTNode , XMLNode
• addChildElement() : RenderGroup
• addColorDefinition() : ListOfColorDefinitions , RenderInformationBase
• addCompartment() : Model
• addCompartmentGlyph() : Layout
• addCompartmentReference() : MultiCompartmentPlugin
• addCompartmentType() : Model
• addConstraint() : CompValidator , FbcValidator , GroupsValidator , LayoutValidator , Model , MultiValidator , QualValidator , RenderValidator , Validator
• addConverter() : SBMLConverterRegistry
• addCreator() : ModelHistory
• addCurveSegment() : Curve
• addCVTerm() : SBase
• addDash() : GraphicalPrimitive1D
• addDefinitionURL() : DefinitionURLRegistry
• addDeletion() : Submodel
• addElement() : Polygon , RenderCurve , RenderGroup
• addEvent() : Model
• addEventAssignment() : Event
• addExpectedAttributes() : Transition
• addExtension() : SBMLExtensionRegistry
• addExternalModelDefinition() : CompSBMLDocumentPlugin
• addFbcAssociation() : ListOfFbcAssociations
• addFluxBound() : FbcModelPlugin
• addFluxObjective() : ListOfFluxObjectives , Objective
• addFunctionDefinition() : Model
• addFunctionTerm() : Transition
• addGene() : Association
• addGeneAssociation() : FbcModelPlugin
• addGeneProduct() : FbcModelPlugin , ListOfGeneProducts
• addGeneralGlyph() : Layout
• addGlobalRenderInformation() : ListOfGlobalRenderInformation , RenderListOfLayoutsPlugin
• addGlobalStyle() : GlobalRenderInformation , ListOfGlobalStyles
• addGradientBase() : ListOfGradientDefinitions
• addGradientDefinition() : RenderInformationBase
• addGradientStop() : GradientBase , ListOfGradientStops
• addGroup() : GroupsModelPlugin , ListOfGroups
• addId() : LocalStyle
• addInitialAssignment() : Model
• addInput() : Transition
• addInSpeciesTypeBond() : MultiSpeciesType
• addL2Namespaces() : LayoutExtension , RenderExtension , SBMLExtension , SBMLExtensionRegistry
• addLayout() : LayoutModelPlugin
• addLineEnding() : ListOfLineEndings , RenderInformationBase
• addLocalParameter() : KineticLaw
• addLocalRenderInformation() : ListOfLocalRenderInformation , RenderLayoutPlugin
• addLocalStyle() : ListOfLocalStyles , LocalRenderInformation
• addMember() : Group , ListOfMembers
• addModelDefinition() : CompSBMLDocumentPlugin
• addModifiedDate() : ModelHistory
• addModifier() : Reaction
• addMultiSpeciesType() : MultiModelPlugin
• addNamespace() : SBMLNamespaces , XMLToken
• addNamespaces() : SBMLNamespaces
• addNestedCVTerm() : CVTerm
• addObjective() : FbcModelPlugin , ListOfObjectives
• addOption() : ConversionProperties
• addOutput() : Transition
• addOutwardBindingSite() : MultiSpeciesPlugin
• addOwnedSBMLDocument() : SBMLResolverRegistry
• addPackageNamespace() : SBMLNamespaces
• addPackageNamespaces() : SBMLNamespaces
• addParameter() : KineticLaw , Model
• addPort() : CompModelPlugin
• addPossibleSpeciesFeatureValue() : SpeciesFeatureType
• addProduct() : Reaction
• addQualitativeSpecies() : QualModelPlugin
• addReactant() : Reaction
• addReaction() : Model
• addReactionGlyph() : Layout
• addReferenceGlyph() : GeneralGlyph
• addRenderPoint() : ListOfCurveElements
• addReplacedElement() : CompSBasePlugin
• addResolver() : SBMLResolverRegistry
• addResource() : CVTerm
• addRole() : Style
• addRule() : Model
• addSBMLDefinitions() : DefinitionURLRegistry
• addSemanticsAnnotation() : ASTNode
• addSpecies() : Model
• addSpeciesFeature() : MultiSpeciesPlugin
• addSpeciesFeatureType() : MultiSpeciesType
• addSpeciesFeatureValue() : SpeciesFeature
• addSpeciesGlyph() : Layout
• addSpeciesReferenceGlyph() : ReactionGlyph
• addSpeciesType() : Model
• addSpeciesTypeComponentIndex() : MultiSpeciesType
• addSpeciesTypeComponentMapInProduct() : MultiSpeciesReferencePlugin
• addSpeciesTypeInstance() : MultiSpeciesType
• addStyle() : GlobalRenderInformation , LocalRenderInformation
• addSubGlyph() : GeneralGlyph
• addSubListOfSpeciesFeatures() : ListOfSpeciesFeatures , MultiSpeciesPlugin
• addSubmodel() : CompModelPlugin
• addTextAttributes() : Text
• addTextGlyph() : Layout
• addTransformation2D() : ListOfDrawables
• addTransition() : QualModelPlugin
• addType() : Style
• addUnit() : UnitDefinition
• addUnitDefinition() : Model
• AlgebraicRule() : AlgebraicRule
• append() : ListOf , XMLToken
• appendAndOwn() : ListOf
• appendAnnotation() : Model , SBase , SpeciesReference
• appendFrom() : ListOf , ListOfObjectives , Model
• appendNotes() : SBase
• areEquivalent() : Unit , UnitDefinition
• areIdentical() : Unit , UnitDefinition
• AssignmentRule() : AssignmentRule
• Association() : Association
• ASTNode() : ASTNode