| Package | Description |
|---|---|
| org.sbml.jsbml |
Pure Java™ implementation of the data structures to represent all SBML
constructs.
|
| org.sbml.jsbml.ext |
The base package for all SBML extensions.
|
| org.sbml.jsbml.math | |
| org.sbml.jsbml.math.compiler | |
| org.sbml.jsbml.math.parser |
Provides classes to parse formula
Strings and to convert these into abstract syntax tree data structures.
|
| org.sbml.jsbml.ontology | |
| org.sbml.jsbml.resources |
Contains classes to deal with and to manage non-Java resources, such as
configuration files.
|
| org.sbml.jsbml.text.parser |
Provides classes to parse formula
Strings and to convert these into abstract syntax tree data structures.
|
| org.sbml.jsbml.util |
A collection of handy utilities when working with JSBML classes,
such as classes for String manipulation or mathematical operations.
|
| org.sbml.jsbml.util.compilers |
The classes in this package can be used to evaluate the information
represented by abstract syntax trees (ASTNode objects).
|
| org.sbml.jsbml.util.filters |
Filters are useful to decide whether or not to accept a certain item.
|
| org.sbml.jsbml.validator |
This package provides methods to validate the content of SBML models, whether
given in a file or as a data structure.
|
| org.sbml.jsbml.validator.offline |
This package provides methods to validate any kind of object without a connection to the internet.
|
| org.sbml.jsbml.validator.offline.constraints | |
| org.sbml.jsbml.validator.offline.constraints.helper | |
| org.sbml.jsbml.validator.offline.factory | |
| org.sbml.jsbml.xml |
This package provides classes and methods to deal with SBML in form of XML
elements, i.e., here you can find parsers and writers for SBML and also
elements to define XML nodes to be used for notes or annotations.
|
| org.sbml.jsbml.xml.parsers |
Contains classes that implement
ReadingParser
and/or WritingParser to read or write some
specific parts of an SBML file. |
| org.sbml.jsbml.xml.stax |
Contains classes that use the Streaming API for XML (StAX)
to read or write an SBML file.
|
| org.sbml.jsbml.xml.xstream.converter |
Contains classes that uses the XStream to read or write XML.
|