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Class org.sbml.jsbml.ext.qual.QualitativeModel

The superclass changed from org.sbml.jsbml.ext.AbstractSBasePlugin to org.sbml.jsbml.ext.qual.QualModelPlugin.

Now deprecated.

Removed Constructors
QualitativeModel(QualitativeModel) @param qualitativeModel
 

Added Constructors
QualitativeModel(QualModelPlugin) @param qualitativeModel
 

Changed Constructors
QualitativeModel(Model) Now deprecated.
use {@link QualModelPlugin} instead.
 

Removed Methods
QualitativeSpecies createQualitativeSpecies() Creates a new QualitativeSpecies inside this QualitativeModel and returns it.
QualitativeSpecies createQualitativeSpecies(String) Creates a new QualitativeSpecies inside this QualitativeModel and returns it.
QualitativeSpecies createQualitativeSpecies(String, String, boolean) Creates a new QualitativeSpecies inside this QualitativeModel and returns it.
QualitativeSpecies createQualitativeSpecies(String, String, Species) Creates a new QualitativeSpecies, based on an existing Species, adds it to this QualitativeModel and returns it.
QualitativeSpecies createQualitativeSpecies(String, Compartment) Creates a new Species inside this Model and returns it.
Transition createTransition() Creates a new Transition inside this QualitativeModel and returns it.
Transition createTransition(String) Creates a new Transition inside this QualitativeModel and returns it.
Transition createTransition(String, Input, Output) @param id
QualitativeSpecies getQualitativeSpecies(int) Gets the ith QualitativeSpecies.
QualitativeSpecies getQualitativeSpecies(String) Gets the QualitativeSpecies that has the given id.
Transition getTransition(int) Gets the ith Transition.
Transition getTransition(String) Gets the Transition that has the given id.
 

Changed Methods
void addQualitativeSpecies(QualitativeSpecies) Method was locally defined, but is now inherited from QualModelPlugin. Adds a QualitativeSpecies to the model.
boolean addSpecies(QualitativeSpecies) Method was locally defined, but is now inherited from QualModelPlugin. Adds a QualitativeSpecies instance to the listOfSpecies of this Model.
void addTransition(Transition) Method was locally defined, but is now inherited from QualModelPlugin. @param transition
QualModelPlugin clone() Change in return type from QualitativeModel to QualModelPlugin.
Method was locally defined, but is now inherited from QualModelPlugin.
 
boolean containsQualitativeSpecies(QualitativeSpecies) Method was locally defined, but is now inherited from QualModelPlugin. Returns {@code true} if {@code qs} is already part of this QualModelPlugin
boolean getAllowsChildren() Method was locally defined, but is now inherited from QualModelPlugin.  
SBase getChildAt(int) Method was locally defined, but is now inherited from QualModelPlugin.  
int getChildCount() Method was locally defined, but is now inherited from QualModelPlugin.  
String getElementNamespace() Method was locally defined, but is now inherited from QualModelPlugin.  
ListOf<QualitativeSpecies> getListOfQualitativeSpecies() Method was locally defined, but is now inherited from QualModelPlugin. @return the listOfQualitativeSpecies
ListOf<Transition> getListOfTransitions() Method was locally defined, but is now inherited from QualModelPlugin. @return the listOTransitions
Model getModel() Method was locally defined, but is now inherited from QualModelPlugin. Returns the Model
String getPackageName() Method was locally defined, but is now inherited from QualModelPlugin.  
SBMLDocument getParent() Method was locally defined, but is now inherited from QualModelPlugin.  
SBMLDocument getParentSBMLObject() Method was locally defined, but is now inherited from QualModelPlugin.  
String getPrefix() Method was locally defined, but is now inherited from QualModelPlugin.  
String getURI() Method was locally defined, but is now inherited from QualModelPlugin.  
boolean isSetListOfQualitativeSpecies() Method was locally defined, but is now inherited from QualModelPlugin. Returns {@code true} if the listOfQualitativeSpecies is set.
boolean isSetListOfTransitions() Method was locally defined, but is now inherited from QualModelPlugin. Returns {@code true} if the listOfTransitions is set.
boolean readAttribute(String, String, String) Method was locally defined, but is now inherited from QualModelPlugin.  
boolean removeQualitativeSpecies(QualitativeSpecies) Method was locally defined, but is now inherited from QualModelPlugin. @param QualitativeSpecies to remove from the listOfQualitativeSpecies
boolean removeTransition(Transition) Method was locally defined, but is now inherited from QualModelPlugin. @param transition to remove from the listOfTransitions
void setListOfQualitativeSpecies(ListOf<QualitativeSpecies>) Method was locally defined, but is now inherited from QualModelPlugin. QualModelPlugin may contain at most one listOfQualitativeSpecies which must contain at least on QualitativeSpecies.
void setListOfTransitions(ListOf<Transition>) Method was locally defined, but is now inherited from QualModelPlugin. QualModelPlugin can contain at most one listOfTransitions which must contain at least one Transition.
boolean unsetListOfQualitativeSpecies() Method was locally defined, but is now inherited from QualModelPlugin. @return {@code true} is successful
boolean unsetListOfTransitions() Method was locally defined, but is now inherited from QualModelPlugin. @return {@code true} is successful
Map<String, String> writeXMLAttributes() Method was locally defined, but is now inherited from QualModelPlugin.