org.sbml.jsbml

Class UnitDefinition

java.lang.Object

org.sbml.jsbml.AbstractTreeNode

org.sbml.jsbml.AbstractSBase

org.sbml.jsbml.AbstractNamedSBase

org.sbml.jsbml.UnitDefinition

All Implemented Interfaces:

java.io.Serializable, java.lang.Cloneable, javax.swing.tree.TreeNode, NamedSBase, SBase, TreeNodeWithChangeSupport

public class UnitDefinition
extends AbstractNamedSBase

Represents the unitDefinition XML element of a SBML file.

Since:

0.8

Version:

$Rev: 1966 $

Author:

Andreas Dräger, Marine Dumousseau

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	AREA Identifier of the (for SBML Level 2) predefined UnitDefinition area.
static java.lang.String	BASE_UNIT_SUFFIX The suffix used in UnitDefinition objects that represent a base Unit.Kind with offset = 0, multiplier = 1, scale = 0, and exponent = 1.
static java.lang.String	LENGTH Identifier of the (for SBML Level 2) predefined UnitDefinition length.
private ListOf<Unit>	listOfUnits Represents the 'listOfUnit' XML sub-element of a UnitDefinition.
private static org.apache.log4j.Logger	logger The logger for this class.
static long	serialVersionUID Generated serial version identifier.
static java.lang.String	SUBSTANCE Identifier of the (for the SBML Levels 1 and 2) predefined UnitDefinition substance.
static java.lang.String	TIME Identifier of the (for the SBML Levels 1 and 2) predefined UnitDefinition time.
static java.lang.String	VOLUME Identifier of the (for some SBML Levels 1 and 2) predefined UnitDefinition volume.

Fields inherited from class org.sbml.jsbml.AbstractSBase

ignoredExtensions, ignoredXMLElements, lv

Fields inherited from class org.sbml.jsbml.AbstractTreeNode

listOfListeners, parent, UNKNOWN_ATTRIBUTES, UNKNOWN_ELEMENTS

Constructor Summary

Constructors

Constructor and Description
UnitDefinition() Creates an UnitDefinition instance.
UnitDefinition(int level, int version)
UnitDefinition(java.lang.String id)
UnitDefinition(java.lang.String id, int level, int version) Creates an UnitDefinition instance from an id, level and version.
UnitDefinition(java.lang.String id, java.lang.String name, int level, int version) Creates an UnitDefinition instance from an id, level and version.
UnitDefinition(UnitDefinition unitDefinition) Creates an UnitDefinition instance from a given UnitDefinition.

Method Summary

Methods

Modifier and Type	Method and Description
void	addUnit(java.lang.String unit)
void	addUnit(Unit.Kind kind) Convenient method to add a new unit object with the given kind that will have the same level/version combination than this UnitDefinition object.
void	addUnit(Unit u) Adds an Unit to this UnitDefinition.
static UnitDefinition	area(int level, int version) Predefined unit for area.
static boolean	areCompatible(UnitDefinition ud1, UnitDefinition ud2) Predicate returning true or false depending on whether two UnitDefinition objects are compatible.
static boolean	areEquivalent(UnitDefinition ud, java.lang.String units) Checks whether the given UnitDefinition and the UnitDefinition or Unit represented by the given String are equivalent.
static boolean	areEquivalent(UnitDefinition ud1, UnitDefinition ud2) Predicate returning true or false depending on whether two UnitDefinition objects are equivalent.
static boolean	areIdentical(UnitDefinition ud1, UnitDefinition ud2) Predicate returning true or false depending on whether two UnitDefinition objects are identical.
void	clear() Removes all Unit elements from the list of Units in this object.
UnitDefinition	clone() Creates a deep copy of this object, i.e., a new SBase with the same properties like this one.
void	convertToSIUnits() This method converts this unit definition to a
Unit	createUnit()
Unit	createUnit(Unit.Kind kind)
UnitDefinition	divideBy(UnitDefinition definition) Divides this unit definition by the second unit definition.
boolean	getAllowsChildren()
javax.swing.tree.TreeNode	getChildAt(int index)
int	getChildCount()
ListOf<Unit>	getListOfUnits()
int	getNumUnits()
ListOf<UnitDefinition>	getParent() This is equivalent to calling AbstractSBase.getParentSBMLObject(), but this method is needed for TreeNode.
static UnitDefinition	getPredefinedUnit(java.lang.String id, int level, int version) This method returns the predefined unit with the given identifier for the specified level and version combination or null if either for the given combination of level and version there is no such predefined unit or the identifier is not one of those belonging to the group of predefined unit definitions.
Unit	getUnit(int i) Returns a specific Unit instance belonging to this UnitDefinition.
int	getUnitCount()
boolean	isBuiltIn() Deprecated. use isPredefined()
static boolean	isBuiltIn(UnitDefinition ud) Deprecated. use isPredefined()
boolean	isIdMandatory() This method can be used to query if the identifier of this NamedSBase is required to be defined (i.e., not null) in the definition of SBML.
boolean	isInvalid() This method checks, if this UnitDefinition only contains Invalid as Unit.Kind.
boolean	isPredefined() This method tests if this unit definition is a predefined unit.
static boolean	isPredefined(java.lang.String name, int level)
static boolean	isPredefined(UnitDefinition ud) Test if the given unit is a predefined unit.
boolean	isSetListOfUnits()
boolean	isUnitKind() Convenient method to test whether this UnitDefinition contains exactly one Unit that itself represents a Unit.Kind, i.e., multiplier = 1, exponent = 1, scale = 1.
boolean	isVariantOfArea()
boolean	isVariantOfLength() Convenience function for testing if a given unit definition is a variant of the predefined unit identifier 'length'.
boolean	isVariantOfSubstance() Convenience function for testing if a given unit definition is a variant of the predefined unit identifier 'substance'.
boolean	isVariantOfSubstancePerArea()
boolean	isVariantOfSubstancePerLength()
boolean	isVariantOfSubstancePerTime()
boolean	isVariantOfSubstancePerVolume()
boolean	isVariantOfTime() Convenience function for testing if a given unit definition is a variant of the predefined unit identifier 'time'.
boolean	isVariantOfVolume() Convenience function for testing if a given unit definition is a variant of the predefined unit identifier 'volume'.
static UnitDefinition	length(int level, int version) Predefined unit for length.
UnitDefinition	multiplyWith(UnitDefinition definition) Multiplies this unit with the given unit definition, i.e., adds a clone of each unit object in the list of units of the given definition to the list of this unit.
static java.lang.String	printUnits(UnitDefinition ud) Returns a string that expresses the unit definition represented by this UnitDefinition object.
static java.lang.String	printUnits(UnitDefinition ud, boolean compact) Returns a string that expresses the unit definition represented by this UnitDefinition object.
UnitDefinition	raiseByThePowerOf(double exponent) Raises this unit definition by the power of the given exponent, i.e., the exponents of every unit contained by this unit definition are multiplied with the given exponent.
Unit	removeUnit(int i) Removes the nth Unit object from this UnitDefinition object and returns a pointer to it.
static void	reorder(UnitDefinition ud) Orders alphabetically the Unit objects within the listOfUnits of a UnitDefinition.
void	setId(java.lang.String id) sets the id value with 'id'
void	setListOfUnits(ListOf<Unit> listOfUnits) Sets the listOfUnits of this UnitDefinition.
UnitDefinition	simplify() Simplifies the UnitDefinition so that any Unit objects occurring within the listOfUnits occurs only once.
static UnitDefinition	simplify(UnitDefinition ud)
static UnitDefinition	substance(int level, int version) Predefined unit for substance.
static UnitDefinition	time(int level, int version) Predefined unit for time.
java.lang.String	toString() Returns the name of the component, if it is available.
boolean	unsetListOfUnits() Removes the listOfUnits from this UnitDefinition and notifies all registered instances of TreeNodeChangeListener.
static UnitDefinition	volume(int level, int version) Predefined unit for volume.

Methods inherited from class org.sbml.jsbml.AbstractNamedSBase

checkIdentifier, equals, getId, getName, hashCode, isSetId, isSetName, isValidId, readAttribute, setName, unsetId, unsetName, writeXMLAttributes

Methods inherited from class org.sbml.jsbml.AbstractSBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendNotes, appendNotes, checkLevelAndVersionCompatibility, createHistory, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, fireNodeRemovedEvent, firePropertyChange, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getIdManager, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, isValidLevelAndVersionCombination, isValidMetaId, notifyChildChange, registerChild, removeCVTerm, removeCVTerm, setAnnotation, setHistory, setLevel, setLevelAndVersion, setMetaId, setNamespace, setNotes, setNotes, setParentSBML, setParentSBMLObject, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNamespace, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from class org.sbml.jsbml.AbstractTreeNode

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, children, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, getIndex, getListOfTreeNodeChangeListeners, getNumChildren, getRoot, getTreeNodeChangeListenerCount, getUserObject, indexOf, isLeaf, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeTreeNodeChangeListener, removeUserObject, setParent, userObjectKeySet

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.sbml.jsbml.SBase

addCVTerm, addDeclaredNamespace, addExtension, addPlugin, appendNotes, appendNotes, createPlugin, disablePackage, enablePackage, enablePackage, filterCVTerms, filterCVTerms, filterCVTerms, filterCVTerms, getAnnotation, getAnnotationString, getCVTerm, getCVTermCount, getCVTerms, getDeclaredNamespaces, getElementName, getExtension, getExtensionCount, getExtensionPackages, getHistory, getLevel, getLevelAndVersion, getMetaId, getModel, getNamespace, getNotes, getNotesString, getNumCVTerms, getNumPlugins, getParentSBMLObject, getPlugin, getSBMLDocument, getSBOTerm, getSBOTermID, getVersion, hasValidAnnotation, hasValidLevelVersionNamespaceCombination, isExtendedByOtherPackages, isPackageEnabled, isPackageURIEnabled, isPkgEnabled, isPkgURIEnabled, isSetAnnotation, isSetHistory, isSetLevel, isSetLevelAndVersion, isSetMetaId, isSetNotes, isSetParentSBMLObject, isSetPlugin, isSetSBOTerm, isSetVersion, registerChild, removeCVTerm, removeCVTerm, removeTreeNodeChangeListener, setAnnotation, setHistory, setLevel, setMetaId, setNotes, setNotes, setSBOTerm, setSBOTerm, setThisAsParentSBMLObject, setVersion, unregisterChild, unsetAnnotation, unsetCVTerms, unsetExtension, unsetHistory, unsetMetaId, unsetNotes, unsetPlugin, unsetSBOTerm

Methods inherited from interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

addAllChangeListeners, addAllChangeListeners, addTreeNodeChangeListener, addTreeNodeChangeListener, clearUserObjects, containsUserObjectKey, filter, filter, filter, fireNodeAddedEvent, fireNodeRemovedEvent, firePropertyChange, getListOfTreeNodeChangeListeners, getRoot, getTreeNodeChangeListenerCount, getUserObject, isRoot, isSetParent, isSetUserObjects, putUserObject, removeAllTreeNodeChangeListeners, removeAllTreeNodeChangeListeners, removeFromParent, removeTreeNodeChangeListener, removeUserObject, userObjectKeySet

Methods inherited from interface javax.swing.tree.TreeNode

children, getIndex, isLeaf

Field Detail

AREA

public static final java.lang.String AREA

Identifier of the (for SBML Level 2) predefined UnitDefinition area.

See Also:

Constant Field Values

LENGTH

public static final java.lang.String LENGTH

Identifier of the (for SBML Level 2) predefined UnitDefinition length.

See Also:

Constant Field Values

logger

private static final org.apache.log4j.Logger logger

The logger for this class.

serialVersionUID

public static final long serialVersionUID

Generated serial version identifier.

See Also:

Constant Field Values

SUBSTANCE

public static final java.lang.String SUBSTANCE

Identifier of the (for the SBML Levels 1 and 2) predefined UnitDefinition substance.

See Also:

Constant Field Values

TIME

public static final java.lang.String TIME

Identifier of the (for the SBML Levels 1 and 2) predefined UnitDefinition time.

See Also:

Constant Field Values

VOLUME

public static final java.lang.String VOLUME

Identifier of the (for some SBML Levels 1 and 2) predefined UnitDefinition volume.

See Also:

Constant Field Values

BASE_UNIT_SUFFIX

public static final java.lang.String BASE_UNIT_SUFFIX

The suffix used in UnitDefinition objects that represent a base Unit.Kind with offset = 0, multiplier = 1, scale = 0, and exponent = 1. Since SBML does not allow that the identifier of a UnitDefinition equals the name of a base unit, this suffix is used to internally store simple units in form of a composite UnitDefinition.

See Also:

Constant Field Values

listOfUnits

private ListOf<Unit> listOfUnits

Represents the 'listOfUnit' XML sub-element of a UnitDefinition.

Constructor Detail

UnitDefinition

public UnitDefinition()

Creates an UnitDefinition instance. By default, the listOfUnit is null.

UnitDefinition

public UnitDefinition(int level,
              int version)

Parameters:

level -

version -

UnitDefinition

public UnitDefinition(java.lang.String id)

Parameters:

id -

UnitDefinition

public UnitDefinition(java.lang.String id,
              int level,
              int version)

Creates an UnitDefinition instance from an id, level and version. By default, the listOfUnit is null.

Parameters:

id -

level -

version -

UnitDefinition

public UnitDefinition(java.lang.String id,
              java.lang.String name,
              int level,
              int version)

Creates an UnitDefinition instance from an id, level and version. By default, the listOfUnit is null.

Parameters:

id -

name -

level -

version -

UnitDefinition

public UnitDefinition(UnitDefinition unitDefinition)

Creates an UnitDefinition instance from a given UnitDefinition.

Parameters:

unitDefinition -

Method Detail

area

public static final UnitDefinition area(int level,
                  int version)

Predefined unit for area.

areCompatible

public static boolean areCompatible(UnitDefinition ud1,
                    UnitDefinition ud2)

Predicate returning true or false depending on whether two UnitDefinition objects are compatible.

For the purposes of performing this comparison, two UnitDefinition objects are considered compatible when they contain compatible list of Unit objects. This means two UnitDefinition objects are compatible if both satisfy the method areEquivalent(UnitDefinition, UnitDefinition) or one of both has Unit.Kind.INVALID as Unit.Kind

Parameters:

ud1 - the first UnitDefinition object to compare

ud2 - the second UnitDefinition object to compare

Returns:

true if all the Unit objects in ud1 are compatible to the Unit objects in ud2, false otherwise.

See Also:

areIdentical(UnitDefinition, UnitDefinition), Unit.areEquivalent(Unit, Unit)

areEquivalent

public static boolean areEquivalent(UnitDefinition ud,
                    java.lang.String units)

Checks whether the given UnitDefinition and the UnitDefinition or Unit represented by the given String are equivalent.

Parameters:

ud -

units -

Returns:

See Also:

areEquivalent(UnitDefinition, UnitDefinition), Unit.areEquivalent(Unit, Unit)

areEquivalent

public static boolean areEquivalent(UnitDefinition ud1,
                    UnitDefinition ud2)

Predicate returning true or false depending on whether two UnitDefinition objects are equivalent.

For the purposes of performing this comparison, two UnitDefinition objects are considered equivalent when they contain equivalent list of Unit objects. Unit objects are in turn considered equivalent if they satisfy the predicate Unit.areEquivalent(Unit, Unit). The predicate tests a subset of the objects's attributes.

Parameters:

ud1 - the first UnitDefinition object to compare

ud2 - the second UnitDefinition object to compare

Returns:

true if all the Unit objects in ud1 are equivalent to the Unit objects in ud2, false otherwise.

See Also:

areIdentical(UnitDefinition, UnitDefinition), Unit.areEquivalent(Unit, String)

areIdentical

public static boolean areIdentical(UnitDefinition ud1,
                   UnitDefinition ud2)

Predicate returning true or false depending on whether two UnitDefinition objects are identical.

For the purposes of performing this comparison, two UnitDefinition objects are considered identical when they contain identical lists of Unit objects. Pairs of Unit objects in the lists are in turn considered identical if they satisfy the predicate Unit.areIdentical(Unit, Unit). The predicate compares every attribute of the Unit objects.

Parameters:

ud1 - the first UnitDefinition object to compare

ud2 - the second UnitDefinition object to compare

Returns:

true if all the Unit objects in ud1 are identical to the Unit objects of ud2, false otherwise.

getPredefinedUnit

public static final UnitDefinition getPredefinedUnit(java.lang.String id,
                               int level,
                               int version)

This method returns the predefined unit with the given identifier for the specified level and version combination or null if either for the given combination of level and version there is no such predefined unit or the identifier is not one of those belonging to the group of predefined unit definitions.

Parameters:

id - one of the values

• substance
• volume
• area
• length
• time
• any of the basic kind

level - a number greater than zero.

version - a number greater than zero.

Returns:

The predefined unit definition with the given identifier for the specified level version combination or null if no such predefined unit exists.

isBuiltIn

@Deprecated
public static boolean isBuiltIn(UnitDefinition ud)

Deprecated. use isPredefined()

Test if the given unit is a predefined unit.

Parameters:

ud -

isPredefined

public static boolean isPredefined(java.lang.String name,
                   int level)

Parameters:

name -

level -

Returns:

isPredefined

public static boolean isPredefined(UnitDefinition ud)

Test if the given unit is a predefined unit.

Parameters:

ud -

Returns:

length

public static final UnitDefinition length(int level,
                    int version)

Predefined unit for length.

printUnits

public static java.lang.String printUnits(UnitDefinition ud)

Returns a string that expresses the unit definition represented by this UnitDefinition object.

Parameters:

ud - the UnitDefinition object

Returns:

a string expressing the unit definition

printUnits

public static java.lang.String printUnits(UnitDefinition ud,
                          boolean compact)

Returns a string that expresses the unit definition represented by this UnitDefinition object.

Parameters:

ud - the UnitDefinition object

compact - boolean indicating whether the compact form should be used (defaults to false)

Returns:

a string expressing the unit definition

reorder

public static void reorder(UnitDefinition ud)

Orders alphabetically the Unit objects within the listOfUnits of a UnitDefinition.

Parameters:

ud - the UnitDefinition object whose Units are to be reordered.

simplify

public static UnitDefinition simplify(UnitDefinition ud)

Parameters:

ud -

Returns:

a simplified version of the given UnitDefinition. In order to make sure that the original UnitDefinition is not changed, it is cloned before the simplification.

substance

public static final UnitDefinition substance(int level,
                       int version)

Predefined unit for substance.

time

public static final UnitDefinition time(int level,
                  int version)

Predefined unit for time.

volume

public static final UnitDefinition volume(int level,
                    int version)

Predefined unit for volume.

addUnit

public void addUnit(java.lang.String unit)

Parameters:

unit -

addUnit

public void addUnit(Unit u)

Adds an Unit to this UnitDefinition.

Parameters:

u -

addUnit

public void addUnit(Unit.Kind kind)

Convenient method to add a new unit object with the given kind that will have the same level/version combination than this UnitDefinition object.

Parameters:

kind -

clear

public void clear()

Removes all Unit elements from the list of Units in this object.

clone

public UnitDefinition clone()

Description copied from interface: SBase

Creates a deep copy of this object, i.e., a new SBase with the same properties like this one.

Specified by:

clone in interface SBase

Specified by:

clone in class AbstractSBase

Returns:

a copy of this object

convertToSIUnits

public void convertToSIUnits()

This method converts this unit definition to a

createUnit

public Unit createUnit()

Returns:

createUnit

public Unit createUnit(Unit.Kind kind)

Parameters:

kind -

Returns:

divideBy

public UnitDefinition divideBy(UnitDefinition definition)

Divides this unit definition by the second unit definition.

Parameters:

definition -

getAllowsChildren

public boolean getAllowsChildren()

Specified by:

getAllowsChildren in interface javax.swing.tree.TreeNode

Overrides:

getAllowsChildren in class AbstractSBase

getChildAt

public javax.swing.tree.TreeNode getChildAt(int index)

Specified by:

getChildAt in interface javax.swing.tree.TreeNode

Overrides:

getChildAt in class AbstractSBase

getChildCount

public int getChildCount()

Specified by:

getChildCount in interface javax.swing.tree.TreeNode

Overrides:

getChildCount in class AbstractSBase

getListOfUnits

public ListOf<Unit> getListOfUnits()

Returns:

the listOfUnits of this UnitDefinition. Can be empty.

getNumUnits

public int getNumUnits()

Returns:

the number of Unit.

getUnitCount

public int getUnitCount()

Returns:

the number of Unit.

getParent

public ListOf<UnitDefinition> getParent()

Description copied from class: AbstractSBase

This is equivalent to calling AbstractSBase.getParentSBMLObject(), but this method is needed for TreeNode.

Specified by:

getParent in interface javax.swing.tree.TreeNode

Overrides:

getParent in class AbstractSBase

Returns:

the parent element of this element.

See Also:

AbstractSBase.getParentSBMLObject()

getUnit

public Unit getUnit(int i)

Returns a specific Unit instance belonging to this UnitDefinition.

Parameters:

i - an integer, the index of the Unit to be returned.

Returns:

the ith Unit of this UnitDefinition

isBuiltIn

@Deprecated
public boolean isBuiltIn()

Deprecated. use isPredefined()

This method tests if this unit definition is a predefined unit.

Returns:

isIdMandatory

public boolean isIdMandatory()

Description copied from interface: NamedSBase

This method can be used to query if the identifier of this NamedSBase is required to be defined (i.e., not null) in the definition of SBML.

Returns:

true if the identifier of this element must be set in order to create a valid SBML representation. false otherwise, i.e., if the identifier can be understood as an optional attribute.

isInvalid

public boolean isInvalid()

This method checks, if this UnitDefinition only contains Invalid as Unit.Kind.

Returns:

isPredefined

public boolean isPredefined()

This method tests if this unit definition is a predefined unit.

Returns:

isSetListOfUnits

public boolean isSetListOfUnits()

Returns:

true if the listOfUnits is not null and not empty.

isUnitKind

public boolean isUnitKind()

Convenient method to test whether this UnitDefinition contains exactly one Unit that itself represents a Unit.Kind, i.e., multiplier = 1, exponent = 1, scale = 1. Note that this method requires the level and version attributes of this UnitDefinition to be set.

Returns:

isVariantOfArea

public boolean isVariantOfArea()

Returns:

true if this UnitDefinition is a variant of Area

isVariantOfLength

public boolean isVariantOfLength()

Convenience function for testing if a given unit definition is a variant of the predefined unit identifier 'length'.

Returns:

true if this UnitDefinition is a variant of the predefined unit length, meaning metres with only arbitrary variations in scale or multiplier values; false otherwise.

isVariantOfSubstance

public boolean isVariantOfSubstance()

Convenience function for testing if a given unit definition is a variant of the predefined unit identifier 'substance'.

Returns:

true if this UnitDefinition is a variant of the predefined unit substance, meaning moles or items (and grams or kilograms from SBML Level 2 Version 2 onwards) with only arbitrary variations in scale or multiplier values; false otherwise.

isVariantOfSubstancePerArea

public boolean isVariantOfSubstancePerArea()

Returns:

isVariantOfSubstancePerLength

public boolean isVariantOfSubstancePerLength()

Returns:

true if this UnitDefinition is a variant of substance per length.

isVariantOfSubstancePerTime

public boolean isVariantOfSubstancePerTime()

Returns:

isVariantOfSubstancePerVolume

public boolean isVariantOfSubstancePerVolume()

Returns:

true if this UnitDefinition is a variant of substance per volume.

isVariantOfTime

public boolean isVariantOfTime()

Convenience function for testing if a given unit definition is a variant of the predefined unit identifier 'time'.

Returns:

true if this UnitDefinition is a variant of the predefined unit time, meaning second with only arbitrary variations in scale or multiplier values; false otherwise.

isVariantOfVolume

public boolean isVariantOfVolume()

Convenience function for testing if a given unit definition is a variant of the predefined unit identifier 'volume'.

Returns:

true if this UnitDefinition is a variant of the predefined unit volume, meaning litre or cubic metre with only arbitrary variations in scale or multiplier values; false otherwise.

multiplyWith

public UnitDefinition multiplyWith(UnitDefinition definition)

Multiplies this unit with the given unit definition, i.e., adds a clone of each unit object in the list of units of the given definition to the list of this unit.

Parameters:

definition -

Returns:

raiseByThePowerOf

public UnitDefinition raiseByThePowerOf(double exponent)

Raises this unit definition by the power of the given exponent, i.e., the exponents of every unit contained by this unit definition are multiplied with the given exponent.

Parameters:

exponent -

Returns:

a pointer to this UnitDefinition.

removeUnit

public Unit removeUnit(int i)

Removes the nth Unit object from this UnitDefinition object and returns a pointer to it. The caller owns the returned object and is responsible for deleting it.

Parameters:

i - the index of the Unit object to remove

Returns:

the Unit object removed. As mentioned above, the caller owns the returned item. null is returned if the given index is out of range.

setId

public void setId(java.lang.String id)

Description copied from interface: NamedSBase

sets the id value with 'id'

Specified by:

setId in interface NamedSBase

Overrides:

setId in class AbstractNamedSBase

setListOfUnits

public void setListOfUnits(ListOf<Unit> listOfUnits)

Sets the listOfUnits of this UnitDefinition. Automatically sets the parent SBML object of the list to this UnitDefinition instance.

Parameters:

listOfUnits -

simplify

public UnitDefinition simplify()

Simplifies the UnitDefinition so that any Unit objects occurring within the listOfUnits occurs only once. Units of Unit.Kind Unit.Kind.INVALID are treated like Unit.Kind.DIMENSIONLESS units and will therefore tend to disappear by merging with other units.

Returns:

a pointer to the simplified UnitDefinition.

toString

public java.lang.String toString()

Description copied from class: AbstractNamedSBase

Returns the name of the component, if it is available. Otherwise, the identifier is returned. If both is not possible, the class name of this element is returned.

Overrides:

toString in class AbstractNamedSBase

unsetListOfUnits

public boolean unsetListOfUnits()

Removes the listOfUnits from this UnitDefinition and notifies all registered instances of TreeNodeChangeListener.

Returns:

true if calling this method lead to a change in this data structure.