Inheritance diagram for libsbmlcs.LayoutExtension:

Detailed Description

layout Base extension class for the package.

This class of objects is defined by libSBML only and has no direct equivalent in terms of SBML components. This class is not prescribed by the SBML specifications, although it is used to implement features defined in SBML.

Public Member Functions
new void	addL2Namespaces (XMLNamespaces xmlns)
	adds all L2 Extension namespaces to the namespace list. More...

new LayoutExtension	clone ()
	Creates and returns a deep copy of this LayoutExtension object. More...

override void	Dispose ()

override SBase	DowncastSBase (IntPtr cPtr, bool owner)

override SBasePlugin	DowncastSBasePlugin (IntPtr cPtr, bool owner)

new void	enableL2NamespaceForDocument (SBMLDocument doc)
	Adds the L2 Namespace to the document and enables the extension. More...

long	getCategory (long index)

new long	getLevel (string uri)
	Returns the SBML Level for the given URI of this package. More...

string	getMessage (long index, long pkgVersion, string details)

new string	getName ()
	Returns the name of this package ('layout') More...

int	getNumOfSBasePlugins ()
	Returns the number of SBasePluginCreatorBase objects stored in this object. More...

long	getNumOfSupportedPackageURI ()
	Returns the number of supported package namespace URIs. More...

new long	getPackageVersion (string uri)
	Returns the SBML Level 3 package version for the given URI of this package. More...

new SBMLNamespaces	getSBMLExtensionNamespaces (string uri)
	Returns a LayoutPkgNamespaces object. More...

long	getSeverity (long index, long pkgVersion)

string	getShortMessage (long index)

new string	getStringFromTypeCode (int typeCode)
	Takes a type code of the “layout” package and returns a string describing the code. More...

string	getSupportedPackageURI (long n)
	Returns the nth XML namespace URI. More...

new string	getURI (long sbmlLevel, long sbmlVersion, long pkgVersion)
	Returns a string representing the SBML XML namespace of this SBML Level 3 package. More...

new long	getVersion (string uri)
	Returns the Version within the SBML Level for the given URI of this package. More...

bool	isEnabled ()
	Returns `true` if this package is enabled. More...

new bool	isInUse (SBMLDocument doc)
	Determines whether this extension is being used by the given SBMLDocument. More...

bool	isSupported (string uri)
	Returns `true` if the given XML namespace URI is supported by this package extension. More...

	LayoutExtension ()
	Creates a new LayoutExtension instance. More...

	LayoutExtension (LayoutExtension orig)
	Copy constructor. More...

new void	removeL2Namespaces (XMLNamespaces xmlns)
	Removes the L2 Namespace from a document. More...

bool	setEnabled (bool isEnabled)
	Enable or disable this package. More...

Static Public Member Functions
static long	getDefaultLevel ()
	Returns the default SBML Level used by this libSBML package extension. More...

static long	getDefaultPackageVersion ()
	Returns the default version of the SBML Level 3 package implemented by this libSBML extension. More...

static long	getDefaultVersion ()
	Returns the default SBML Version used by this libSBML package extension. More...

static string	getPackageName ()
	Returns the nickname of the SBML Level 3 package implemented by this libSBML extension. More...

static string	getXmlnsL2 ()
	Returns the XML namespace URI of the SBML Level 2 version of the package implemented by this libSBML Extension. More...

static string	getXmlnsL3V1V1 ()
	Returns the XML namespace URI of the SBML Level 3 package implemented by this libSBML extension. More...

static string	getXmlnsXSI ()
	Returns the XML namespace URI of any additional XML namespaces needed or used by this SBML Level 3 package. More...

static void	init ()

Protected Attributes
bool	swigCMemOwn

Constructor & Destructor Documentation

libsbmlcs.LayoutExtension.LayoutExtension ( )

Creates a new LayoutExtension instance.

libsbmlcs.LayoutExtension.LayoutExtension ( LayoutExtension orig )

Copy constructor.

Parameters

orig	the instance to copy.

Member Function Documentation

new void libsbmlcs.LayoutExtension.addL2Namespaces ( XMLNamespaces xmlns )

adds all L2 Extension namespaces to the namespace list.

This method is overridden here since Layout does serialize to an L2 annotation.

new LayoutExtension libsbmlcs.LayoutExtension.clone ( )

Creates and returns a deep copy of this LayoutExtension object.

Returns: a (deep) copy of this LayoutExtension object.

override void libsbmlcs.LayoutExtension.Dispose ( )

virtual

Reimplemented from libsbmlcs.SBMLExtension.

override SBase libsbmlcs.LayoutExtension.DowncastSBase	(	IntPtr	cPtr,
		bool	owner
	)

virtual

Reimplemented from libsbmlcs.SBMLExtension.

override SBasePlugin libsbmlcs.LayoutExtension.DowncastSBasePlugin	(	IntPtr	cPtr,
		bool	owner
	)

virtual

Reimplemented from libsbmlcs.SBMLExtension.

new void libsbmlcs.LayoutExtension.enableL2NamespaceForDocument ( SBMLDocument doc )

Adds the L2 Namespace to the document and enables the extension.

This method is overridden here since Layout does serialize to an L2 annotation.

long libsbmlcs.SBMLExtension.getCategory ( long index )

inherited

static long libsbmlcs.LayoutExtension.getDefaultLevel ( )

static

Returns the default SBML Level used by this libSBML package extension.

Returns: the SBML Level.

static long libsbmlcs.LayoutExtension.getDefaultPackageVersion ( )

static

Returns the default version of the SBML Level 3 package implemented by this libSBML extension.

Returns: the default version number of the SBML Level 3 package definition.

static long libsbmlcs.LayoutExtension.getDefaultVersion ( )

static

Returns the default SBML Version used by this libSBML package extension.

Returns: the Version within the default SBML Level.

new long libsbmlcs.LayoutExtension.getLevel ( string uri )

Returns the SBML Level for the given URI of this package.

Parameters

uri	a URI that represents a version of this package.

Returns: the SBML Level for the given URI of this package, or 0 if the given URI is invalid, or for a different package.

string libsbmlcs.SBMLExtension.getMessage	(	long	index,
		long	pkgVersion,
		string	details
	)

inherited

new string libsbmlcs.LayoutExtension.getName ( )

Returns the name of this package ('layout')

Returns: the name of this package ('layout').

int libsbmlcs.SBMLExtension.getNumOfSBasePlugins ( )

inherited

Returns the number of SBasePluginCreatorBase objects stored in this object.

Returns: the total number of SBasePluginCreatorBase objects stored in this SBMLExtension-derived object.

long libsbmlcs.SBMLExtension.getNumOfSupportedPackageURI ( )

inherited

Returns the number of supported package namespace URIs.

Returns: the number of supported package XML namespace URIs of this package extension.

static string libsbmlcs.LayoutExtension.getPackageName ( )

static

Returns the nickname of the SBML Level 3 package implemented by this libSBML extension.

Returns: the package nickname, as a string.

new long libsbmlcs.LayoutExtension.getPackageVersion ( string uri )

Returns the SBML Level 3 package version for the given URI of this package.

Parameters

uri	a URI that represents one of the valid versions of this package.

Returns: the version of the SBML Level 3 package with the given URI, or 0 if the given URI is invalid, or for a different package.

new SBMLNamespaces libsbmlcs.LayoutExtension.getSBMLExtensionNamespaces ( string uri )

Returns a LayoutPkgNamespaces object.

Parameters

uri	a URI that represents one of the valid versions of the “layout” package.

Returns: a LayoutPkgNamespaces object corresponding to the given uri, or null if the URI is not defined in the Layout package.

long libsbmlcs.SBMLExtension.getSeverity	(	long	index,
		long	pkgVersion
	)

inherited

string libsbmlcs.SBMLExtension.getShortMessage ( long index )

inherited

new string libsbmlcs.LayoutExtension.getStringFromTypeCode ( int typeCode )

Takes a type code of the “layout” package and returns a string describing the code.

Parameters

typeCode a libSBML type code defined by the libSBML extension. implementing support for the SBML Level 3 “layout” package.

Returns: a text string representing the type code given by typeCode. If the type code is unrecognized for this implementation of the libSBML “layout” package, the string returned will be '(Unknown SBML Layout Type)'.

string libsbmlcs.SBMLExtension.getSupportedPackageURI ( long n )

inherited

Returns the nth XML namespace URI.

Parameters

n	the index number of the namespace URI being sought.

Returns: a string representing the XML namespace URI understood to be supported by this package. An empty string will be returned if there is no nth URI.

new string libsbmlcs.LayoutExtension.getURI	(	long	sbmlLevel,
		long	sbmlVersion,
		long	pkgVersion
	)

Returns a string representing the SBML XML namespace of this SBML Level 3 package.

The namespace URI constructed by this method corresponds to the combination of the Level and Version of SBML, and the Version of the SBML Level 3 package. (At the time of this writing, the only SBML Level that supports packages is Level 3, so the value of sbmlLevel must necessarily always be 3.)

Parameters

sbmlLevel	the level of SBML.
sbmlVersion	the version of SBML.
pkgVersion	the version of the package.

Returns: a string of the package URI, or an empty string if no corresponding URI exists.

new long libsbmlcs.LayoutExtension.getVersion ( string uri )

Returns the Version within the SBML Level for the given URI of this package.

Parameters

uri	a URI that represents a version of this package.

Returns: the SBML Version within the SBML Level for the given URI of this package, or 0 if the given URI is invalid, or for a different package.

static string libsbmlcs.LayoutExtension.getXmlnsL2 ( )

static

Returns the XML namespace URI of the SBML Level 2 version of the package implemented by this libSBML Extension.

Unique among the SBML Level 3 packages, the Layout package existed and was in widespread use prior to the introduction of SBML Level 3. The Layout package was used as model annotations in SBML Level 2. This method returns the SBML annotation XML namespace used for Level 2.

Returns: the XML namespace as a string.

static string libsbmlcs.LayoutExtension.getXmlnsL3V1V1 ( )

static

Returns the XML namespace URI of the SBML Level 3 package implemented by this libSBML extension.

Returns: the XML namespace as a string.

static string libsbmlcs.LayoutExtension.getXmlnsXSI ( )

static

Returns the XML namespace URI of any additional XML namespaces needed or used by this SBML Level 3 package.

Returns: the XML namespace as a string.

static void libsbmlcs.LayoutExtension.init ( )

static

bool libsbmlcs.SBMLExtension.isEnabled ( )

inherited

Returns true if this package is enabled.

Returns: true if this package is enabled, false otherwise.

new bool libsbmlcs.LayoutExtension.isInUse ( SBMLDocument doc )

Determines whether this extension is being used by the given SBMLDocument.

The implementation returns true if the model object contains one or more layouts.

Parameters

doc	the sbml document to test.

Returns: a boolean indicating whether the extension is actually being used by the document.

bool libsbmlcs.SBMLExtension.isSupported ( string uri )

inherited

Returns true if the given XML namespace URI is supported by this package extension.

Returns: true if the given XML namespace URI (equivalent to a package version) is supported by this package extension, false otherwise.

new void libsbmlcs.LayoutExtension.removeL2Namespaces ( XMLNamespaces xmlns )

Removes the L2 Namespace from a document.

This method is overridden here since Layout does serialize to an L2 annotation.

bool libsbmlcs.SBMLExtension.setEnabled ( bool isEnabled )

inherited

Enable or disable this package.

Parameters

isEnabled flag indicating whether to enable (if true) or disable (false) this package extension.

Returns: true if this call succeeded; false otherwise.

Member Data Documentation

bool libsbmlcs.SBMLExtension.swigCMemOwn

protectedinherited

Detailed Description

Public Member Functions

Static Public Member Functions

Protected Attributes

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation