Here is a list of all class members with links to the classes they belong to:
- c -
- canonicalize()
: ASTNode
- ch
: Token_t
- changeErrorSeverity()
: XMLErrorLog
- checkCompatibility()
: CobraToFbcConverter
- checkConsistency()
: SBMLDocument
, SBMLInternalValidator
- checkConsistencyWithStrictUnits()
: SBMLDocument
- checkInternalConsistency()
: SBMLDocument
, SBMLInternalValidator
- checkL1Compatibility()
: SBMLDocument
, SBMLInternalValidator
- checkL2v1Compatibility()
: SBMLDocument
, SBMLInternalValidator
- checkL2v2Compatibility()
: SBMLDocument
, SBMLInternalValidator
- checkL2v3Compatibility()
: SBMLDocument
, SBMLInternalValidator
- checkL2v4Compatibility()
: SBMLDocument
, SBMLInternalValidator
- checkL2v5Compatibility()
: SBMLDocument
, SBMLInternalValidator
- checkL3v1Compatibility()
: SBMLDocument
, SBMLInternalValidator
- checkL3v2Compatibility()
: SBMLDocument
, SBMLInternalValidator
- checkTerm()
: SBO
- clear()
: ListOf
, XMLAttributes
, XMLNamespaces
- clearAdditionalDirs()
: SBMLFileResolver
- clearAllElementIdList()
: Model
- clearAllElementMetaIdList()
: Model
- clearAssociations()
: Association
- clearAttributes()
: XMLToken
- clearDashes()
: GraphicalPrimitive1D
- clearDefinitions()
: DefinitionURLRegistry
- clearFailures()
: SBMLValidator
, Validator
- clearInstantiation()
: Submodel
- clearLog()
: XMLErrorLog
- clearNamespaces()
: XMLToken
- clearReferencedElement()
: SBaseRef
- clearReplacedElements()
: CompSBasePlugin
- clone()
: AlgebraicRule
, AssignmentRule
, Association
, BindingSiteSpeciesType
, BoundingBox
, CobraToFbcConverter
, ColorDefinition
, Compartment
, CompartmentGlyph
, CompartmentReference
, CompartmentType
, CompExtension
, CompFlatteningConverter
, CompModelPlugin
, CompSBasePlugin
, CompSBMLDocumentPlugin
, Constraint
, ConversionOption
, ConversionProperties
, CubicBezier
, Curve
, CVTerm
, Date
, DefaultTerm
, DefaultValues
, Delay
, Deletion
, Dimensions
, Ellipse
, Event
, EventAssignment
, ExternalModelDefinition
, FbcAnd
, FbcAssociation
, FbcExtension
, FbcModelPlugin
, FbcOr
, FbcReactionPlugin
, FbcSBMLDocumentPlugin
, FbcSpeciesPlugin
, FbcToCobraConverter
, FbcV1ToV2Converter
, FbcV2ToV1Converter
, FluxBound
, FluxObjective
, FunctionDefinition
, FunctionTerm
, GeneAssociation
, GeneProduct
, GeneProductAssociation
, GeneProductRef
, GeneralGlyph
, GlobalRenderInformation
, GlobalStyle
, GradientBase
, GradientStop
, GraphicalObject
, GraphicalPrimitive1D
, GraphicalPrimitive2D
, Group
, GroupsExtension
, GroupsModelPlugin
, GroupsSBMLDocumentPlugin
, Image
, InitialAssignment
, Input
, InSpeciesTypeBond
, IntraSpeciesReaction
, KineticLaw
, Layout
, LayoutExtension
, LayoutModelPlugin
, LayoutSBMLDocumentPlugin
, LayoutSpeciesReferencePlugin
, LinearGradient
, LineEnding
, LineSegment
, ListOf
, ListOfColorDefinitions
, ListOfCompartmentGlyphs
, ListOfCompartmentReferences
, ListOfCompartments
, ListOfCompartmentTypes
, ListOfConstraints
, ListOfCurveElements
, ListOfDeletions
, ListOfDrawables
, ListOfEventAssignments
, ListOfEvents
, ListOfExternalModelDefinitions
, ListOfFbcAssociations
, ListOfFluxBounds
, ListOfFluxObjectives
, ListOfFunctionDefinitions
, ListOfFunctionTerms
, ListOfGeneAssociations
, ListOfGeneProducts
, ListOfGlobalRenderInformation
, ListOfGlobalStyles
, ListOfGradientDefinitions
, ListOfGradientStops
, ListOfGraphicalObjects
, ListOfGroups
, ListOfInitialAssignments
, ListOfInputs
, ListOfInSpeciesTypeBonds
, ListOfLayouts
, ListOfLineEndings
, ListOfLineSegments
, ListOfLocalParameters
, ListOfLocalRenderInformation
, ListOfLocalStyles
, ListOfMembers
, ListOfModelDefinitions
, ListOfMultiSpeciesTypes
, ListOfObjectives
, ListOfOutputs
, ListOfOutwardBindingSites
, ListOfParameters
, ListOfPorts
, ListOfPossibleSpeciesFeatureValues
, ListOfQualitativeSpecies
, ListOfReactionGlyphs
, ListOfReactions
, ListOfReferenceGlyphs
, ListOfReplacedElements
, ListOfRules
, ListOfSpecies
, ListOfSpeciesFeatures
, ListOfSpeciesFeatureTypes
, ListOfSpeciesFeatureValues
, ListOfSpeciesGlyphs
, ListOfSpeciesReferenceGlyphs
, ListOfSpeciesReferences
, ListOfSpeciesTypeComponentIndexes
, ListOfSpeciesTypeComponentMapInProducts
, ListOfSpeciesTypeInstances
, ListOfSpeciesTypes
, ListOfSubmodels
, ListOfTextGlyphs
, ListOfTransitions
, ListOfUnitDefinitions
, ListOfUnits
, LocalParameter
, LocalRenderInformation
, LocalStyle
, Member
, Model
, ModelCreator
, ModelDefinition
, ModelHistory
, ModifierSpeciesReference
, MultiASTPlugin
, MultiCompartmentPlugin
, MultiExtension
, MultiListOfReactionsPlugin
, MultiModelPlugin
, MultiSBMLDocumentPlugin
, MultiSimpleSpeciesReferencePlugin
, MultiSpeciesPlugin
, MultiSpeciesReferencePlugin
, MultiSpeciesType
, Objective
, Output
, OutwardBindingSite
, Parameter
, Point
, Polygon
, Port
, PossibleSpeciesFeatureValue
, Priority
, QualExtension
, QualitativeSpecies
, QualModelPlugin
, QualSBMLDocumentPlugin
, RadialGradient
, RateRule
, Reaction
, ReactionGlyph
, Rectangle
, ReferenceGlyph
, RelAbsVector
, RenderCubicBezier
, RenderCurve
, RenderExtension
, RenderGraphicalObjectPlugin
, RenderGroup
, RenderInformationBase
, RenderLayoutConverter
, RenderLayoutPlugin
, RenderListOfLayoutsPlugin
, RenderPoint
, RenderSBMLDocumentPlugin
, ReplacedBy
, ReplacedElement
, Rule
, SBase
, SBaseExtensionPoint
, SBasePlugin
, SBasePluginCreator< SBasePluginType, SBMLExtensionType >
, SBasePluginCreatorBase
, SBaseRef
, SBMLConverter
, SBMLDocument
, SBMLDocumentPlugin
, SBMLExtension
, SBMLExtensionNamespaces< SBMLExtensionType >
, SBMLFileResolver
, SBMLFunctionDefinitionConverter
, SBMLIdConverter
, SBMLInferUnitsConverter
, SBMLInitialAssignmentConverter
, SBMLInternalValidator
, SBMLLevel1Version1Converter
, SBMLLevelVersionConverter
, SBMLLocalParameterConverter
, SBMLNamespaces
, SBMLRateOfConverter
, SBMLReactionConverter
, SBMLResolver
, SBMLRuleConverter
, SBMLStripPackageConverter
, SBMLUnitsConverter
, SBMLUri
, SBMLValidator
, Species
, SpeciesFeature
, SpeciesFeatureType
, SpeciesFeatureValue
, SpeciesGlyph
, SpeciesReference
, SpeciesReferenceGlyph
, SpeciesType
, SpeciesTypeComponentIndex
, SpeciesTypeComponentMapInProduct
, SpeciesTypeInstance
, StoichiometryMath
, Style
, SubListOfSpeciesFeatures
, Submodel
, Text
, TextGlyph
, Transformation2D
, Transformation
, Transition
, Trigger
, Unit
, UnitDefinition
, XMLAttributes
, XMLNamespaces
, XMLNode
, XMLToken
, XMLTriple
- CobraToFbcConverter()
: CobraToFbcConverter
- ColorDefinition()
: ColorDefinition
- combine()
: UnitDefinition
- Compartment()
: Compartment
- CompartmentGlyph()
: CompartmentGlyph
- CompartmentReference()
: CompartmentReference
- CompartmentType()
: CompartmentType
- CompBase()
: CompBase
- CompExtension()
: CompExtension
- CompFlatteningConverter()
: CompFlatteningConverter
- CompModelPlugin
: CompBase
, CompModelPlugin
, ReplacedBy
, ReplacedElement
- CompSBasePlugin()
: CompSBasePlugin
- CompSBMLDocumentPlugin()
: CompSBMLDocumentPlugin
- CompValidator()
: CompValidator
- Constraint()
: Constraint
- contains()
: SBMLErrorLog
, XMLErrorLog
- containsChild()
: XMLInputStream
- containsUndeclaredUnits()
: Delay
, EventAssignment
, InitialAssignment
, KineticLaw
, Rule
, StoichiometryMath
- containsUri()
: XMLNamespaces
- ConversionOption()
: ConversionOption
- ConversionProperties()
: ConversionProperties
- convert()
: CobraToFbcConverter
, CompFlatteningConverter
, FbcToCobraConverter
, FbcV1ToV2Converter
, FbcV2ToV1Converter
, RenderLayoutConverter
, SBMLConverter
, SBMLDocument
, SBMLFunctionDefinitionConverter
, SBMLIdConverter
, SBMLInferUnitsConverter
, SBMLInitialAssignmentConverter
, SBMLLevel1Version1Converter
, SBMLLevelVersionConverter
, SBMLLocalParameterConverter
, SBMLRateOfConverter
, SBMLReactionConverter
, SBMLRuleConverter
, SBMLStripPackageConverter
, SBMLUnitsConverter
- convertStringToXMLNode()
: XMLNode
- convertTimeAndExtent()
: Submodel
- convertToSI()
: Unit
, UnitDefinition
- convertXMLNodeToString()
: XMLNode
- copyInformationToNestedLists()
: GroupsModelPlugin
- countIf()
: List
- createAdditionalGraphicalObject()
: Layout
- createAlgebraicRule()
: Model
- createAnd()
: Association
, FbcAnd
, FbcOr
, GeneProductAssociation
, ListOfFbcAssociations
- createAnnotation()
: RDFAnnotationParser
- createAssignmentRule()
: Model
- createAssociation()
: GeneAssociation
- createBindingSiteSpeciesType()
: MultiModelPlugin
- createBoundingBox()
: LineEnding
- createColorDefinition()
: ListOfColorDefinitions
, RenderInformationBase
- createCompartment()
: Model
- createCompartmentGlyph()
: Layout
- createCompartmentReference()
: MultiCompartmentPlugin
- createCompartmentType()
: Model
- createConstraint()
: Model
- createCubicBezier()
: Curve
, GeneralGlyph
, Layout
, ListOfCurveElements
, Polygon
, ReactionGlyph
, ReferenceGlyph
, RenderCurve
, SpeciesReferenceGlyph
- createCurve()
: ListOfDrawables
, RenderGroup
- createCVTerms()
: RDFAnnotationParser
- createDefaultTerm()
: ListOfFunctionTerms
, Transition
- createDefaultValues()
: ListOfGlobalRenderInformation
, ListOfLocalRenderInformation
- createDelay()
: Event
, Model
- createDeletion()
: Submodel
- createEllipse()
: ListOfDrawables
, RenderGroup
- createEvent()
: Model
- createEventAssignment()
: Event
, Model
- createExternalModelDefinition()
: CompSBMLDocumentPlugin
- createFluxBound()
: FbcModelPlugin
- createFluxObjective()
: ListOfFluxObjectives
, Objective
- createFunctionDefinition()
: Model
- createFunctionTerm()
: Transition
- createGene()
: Association
- createGeneAssociation()
: FbcModelPlugin
- createGeneProduct()
: FbcModelPlugin
, ListOfGeneProducts
- createGeneProductAssociation()
: FbcReactionPlugin
- createGeneProductRef()
: FbcAnd
, FbcOr
, GeneProductAssociation
, ListOfFbcAssociations
- createGeneralGlyph()
: Layout
- createGlobalRenderInformation()
: ListOfGlobalRenderInformation
, RenderListOfLayoutsPlugin
- createGlobalStyle()
: GlobalRenderInformation
, ListOfGlobalStyles
- createGradientStop()
: GradientBase
, ListOfGradientStops
- createGroup()
: GroupsModelPlugin
, LineEnding
, ListOfDrawables
, ListOfGroups
, RenderGroup
, Style
- createIdString()
: LocalStyle
- createImage()
: ListOfDrawables
, RenderGroup
- createInitialAssignment()
: Model
- createInput()
: Transition
- createInSpeciesTypeBond()
: MultiSpeciesType
- createIntraSpeciesReaction()
: MultiModelPlugin
- createKineticLaw()
: Model
, Reaction
- createKineticLawLocalParameter()
: Model
- createKineticLawParameter()
: Model
- createLayout()
: LayoutModelPlugin
- createLinearGradient()
: ListOfGradientDefinitions
- createLinearGradientDefinition()
: RenderInformationBase
- createLineEnding()
: ListOfDrawables
, ListOfLineEndings
, RenderGroup
, RenderInformationBase
- createLineSegment()
: Curve
, GeneralGlyph
, Layout
, ReactionGlyph
, ReferenceGlyph
, SpeciesReferenceGlyph
- createLocalParameter()
: KineticLaw
- createLocalRenderInformation()
: ListOfLocalRenderInformation
, RenderLayoutPlugin
- createLocalStyle()
: ListOfLocalStyles
, LocalRenderInformation
- createMember()
: Group
, ListOfMembers
- createModel()
: SBMLDocument
- createModelDefinition()
: CompSBMLDocumentPlugin
- createModifier()
: Model
, Reaction
- createMultiSpeciesType()
: MultiModelPlugin
- createObject()
: Transition
- createObjective()
: FbcModelPlugin
, ListOfObjectives
- createOr()
: Association
, FbcAnd
, FbcOr
, GeneProductAssociation
, ListOfFbcAssociations
- createOutput()
: Transition
- createOutwardBindingSite()
: MultiSpeciesPlugin
- createParameter()
: KineticLaw
, Model
- createPlugin()
: SBasePluginCreator< SBasePluginType, SBMLExtensionType >
, SBasePluginCreatorBase
- createPoint()
: Polygon
, RenderCurve
- createPolygon()
: ListOfDrawables
, RenderGroup
- createPort()
: CompModelPlugin
- createPossibleSpeciesFeatureValue()
: SpeciesFeatureType
- createPriority()
: Event
- createProduct()
: Model
, Reaction
- createQualitativeSpecies()
: QualModelPlugin
- createRadialGradient()
: ListOfGradientDefinitions
- createRadialGradientDefinition()
: RenderInformationBase
- createRateRule()
: Model
- createRDFAnnotation()
: RDFAnnotationParser
- createRDFDescription()
: RDFAnnotationParser
- createReactant()
: Model
, Reaction
- createReaction()
: Model
- createReactionGlyph()
: Layout
- createRectangle()
: ListOfDrawables
, RenderGroup
- createReferenceGlyph()
: GeneralGlyph
- createReplacedBy()
: CompSBasePlugin
- createReplacedElement()
: CompSBasePlugin
- createRoleString()
: Style
- createSBaseRef()
: SBaseRef
- createSpecies()
: Model
- createSpeciesFeature()
: MultiSpeciesPlugin
, SubListOfSpeciesFeatures
- createSpeciesFeatureType()
: MultiSpeciesType
- createSpeciesFeatureValue()
: SpeciesFeature
- createSpeciesGlyph()
: Layout
- createSpeciesReferenceGlyph()
: Layout
, ReactionGlyph
- createSpeciesType()
: Model
- createSpeciesTypeComponentIndex()
: MultiSpeciesType
- createSpeciesTypeComponentMapInProduct()
: MultiSpeciesReferencePlugin
- createSpeciesTypeInstance()
: MultiSpeciesType
- createStoichiometryMath()
: SpeciesReference
- createStyle()
: GlobalRenderInformation
- createSubListOfSpeciesFeatures()
: MultiSpeciesPlugin
- createSubmodel()
: CompModelPlugin
- createText()
: ListOfDrawables
, RenderGroup
- createTextGlyph()
: Layout
- createTransition()
: QualModelPlugin
- createTrigger()
: Event
, Model
- createTypeString()
: Style
- createUnit()
: Model
, UnitDefinition
- createUnitDefinition()
: Model
- createValueString()
: ColorDefinition
- CubicBezier()
: CubicBezier
- Curve()
: Curve
- CVTerm()
: CVTerm