Here is a list of all class members with links to the classes they belong to:

- s -

• saveReferencedElement() : Deletion , Port , Replacing , SBaseRef
• SBaseExtensionPoint() : SBaseExtensionPoint
• SBasePluginCreator() : SBasePluginCreator< SBasePluginType, SBMLExtensionType >
• SBasePluginCreatorBase() : SBasePluginCreatorBase
• SBaseRef() : SBaseRef
• SBMLConverter() : SBMLConverter
• SBMLConverterRegister() : SBMLConverterRegister< SBMLConversionType >
• SBMLDocument : Model , SBMLDocument
• SBMLDocumentPlugin() : SBMLDocumentPlugin
• SBMLDocumentPluginNotRequired() : SBMLDocumentPluginNotRequired
• SBMLError() : SBMLError
• SBMLExtension() : SBMLExtension
• SBMLExtensionException() : SBMLExtensionException
• SBMLExtensionNamespaces() : SBMLExtensionNamespaces< SBMLExtensionType >
• SBMLExtensionRegister() : SBMLExtensionRegister< SBMLExtensionType >
• SBMLFileResolver() : SBMLFileResolver
• SBMLFunctionDefinitionConverter() : SBMLFunctionDefinitionConverter
• SBMLIdConverter() : SBMLIdConverter
• SBMLInferUnitsConverter() : SBMLInferUnitsConverter
• SBMLInitialAssignmentConverter() : SBMLInitialAssignmentConverter
• SBMLInternalValidator() : SBMLInternalValidator
• SBMLLevel1Version1Converter() : SBMLLevel1Version1Converter
• SBMLLevelVersionConverter() : SBMLLevelVersionConverter
• SBMLLocalParameterConverter() : SBMLLocalParameterConverter
• SBMLNamespaces() : SBMLNamespaces
• SBMLRateOfConverter() : SBMLRateOfConverter
• SBMLReactionConverter() : SBMLReactionConverter
• SBMLReader() : SBMLReader
• SBMLResolver() : SBMLResolver
• SBMLRuleConverter() : SBMLRuleConverter
• SBMLStripPackageConverter() : SBMLStripPackageConverter
• SBMLUnitsConverter() : SBMLUnitsConverter
• SBMLUri() : SBMLUri
• SBMLValidator() : SBMLValidator
• SBMLWriter() : SBMLWriter
• setAbsoluteValue() : RelAbsVector
• setActiveObjective() : ListOfObjectives
• setActiveObjectiveId() : FbcModelPlugin
• setAdditionalDirs() : SBMLFileResolver
• setAlpha() : ColorDefinition
• setAnnotation() : Model , SBase , SpeciesReference
• setApplicableValidators() : SBMLInternalValidator
• setAreaUnits() : Model
• setAssociatedSpecies() : GeneProduct
• setAssociation() : GeneAssociation , GeneProductAssociation
• setAttributes() : XMLToken
• setAutoIndent() : XMLOutputStream
• setBackgroundColor() : DefaultValues , RenderInformationBase
• setBasePoint1() : CubicBezier , RenderCubicBezier
• setBasePoint1_x() : RenderCubicBezier
• setBasePoint1_X() : RenderCubicBezier
• setBasePoint1_Y() : RenderCubicBezier
• setBasePoint1_y() : RenderCubicBezier
• setBasePoint1_Z() : RenderCubicBezier
• setBasePoint1_z() : RenderCubicBezier
• setBasePoint2() : CubicBezier , RenderCubicBezier
• setBasePoint2_x() : RenderCubicBezier
• setBasePoint2_X() : RenderCubicBezier
• setBasePoint2_y() : RenderCubicBezier
• setBasePoint2_Y() : RenderCubicBezier
• setBasePoint2_Z() : RenderCubicBezier
• setBasePoint2_z() : RenderCubicBezier
• setBindingSite1() : InSpeciesTypeBond
• setBindingSite2() : InSpeciesTypeBond
• setBindingStatus() : OutwardBindingSite
• setBiologicalQualifierType() : CVTerm
• setBlue() : ColorDefinition
• setBoolValue() : ConversionOption , ConversionProperties
• setBoundaryCondition() : Species
• setBoundingBox() : GraphicalObject , LineEnding
• setBounds() : Dimensions
• setCenter() : RadialGradient
• setCenter2D() : Ellipse
• setCenter3D() : Ellipse
• setCharacter() : ASTNode
• setCharacters() : XMLToken
• setCharge() : FbcSpeciesPlugin , Species
• setChemicalFormula() : FbcSpeciesPlugin
• setClass() : ASTNode
• setCoefficient() : FluxObjective
• setColorValue() : ColorDefinition
• setColumn() : XMLError
• setComparisonCaseSensitivity() : L3ParserSettings
• setCompartment() : CompartmentReference , MultiSpeciesType , QualitativeSpecies , Reaction , Species
• setCompartmentId() : CompartmentGlyph
• setCompartmentReference() : MultiSimpleSpeciesReferencePlugin , SpeciesTypeInstance
• setCompartmentType() : Compartment , MultiCompartmentPlugin
• setComponent() : OutwardBindingSite , SpeciesFeature , SpeciesTypeComponentIndex , SubListOfSpeciesFeatures
• setConsistencyChecks() : SBMLDocument , SBMLInternalValidator
• setConsistencyChecksForConversion() : SBMLDocument , SBMLInternalValidator
• setConstant() : Compartment , Parameter , QualitativeSpecies , Species , SpeciesReference
• setConversionFactor() : Model , ReplacedElement , Species
• setConversionValidators() : SBMLInternalValidator
• setCoordinate() : RelAbsVector
• setCoordinates() : Image , LinearGradient , RadialGradient , Rectangle , RenderPoint , Text
• setCoordinatesAndSize() : Rectangle
• setCreatedDate() : ModelHistory
• setCurve() : GeneralGlyph , ReactionGlyph , ReferenceGlyph , SpeciesReferenceGlyph
• setCX() : Ellipse
• setCx() : RadialGradient
• setCY() : Ellipse
• setCy() : RadialGradient
• setCZ() : Ellipse
• setCz() : RadialGradient
• setDashArray() : GraphicalPrimitive1D
• setDashByIndex() : GraphicalPrimitive1D
• setDateAsString() : Date
• setDay() : Date
• setDefault_z() : DefaultValues
• setDefaultTerm() : ListOfFunctionTerms , Transition
• setDefaultValues() : ListOfGlobalRenderInformation , ListOfLocalRenderInformation
• setDelay() : Event
• setDeletion() : ReplacedElement
• setDenominator() : SpeciesReference
• setDepth() : BoundingBox , Dimensions
• setDescription() : ConversionOption
• setDimensions() : BoundingBox , Image , Layout
• setDivider() : CompModelPlugin
• setDocument() : SBMLConverter , SBMLRateOfConverter , SBMLReactionConverter , SBMLValidator
• setDoubleValue() : ConversionOption , ConversionProperties
• setElementName() : FbcAssociation , Point
• setElementNamespace() : SBasePlugin
• setElementText() : SBase
• setEmail() : ModelCreator
• setEnabled() : SBMLExtension , SBMLExtensionRegistry
• setEnableRotationalMapping() : DefaultValues , LineEnding
• setEnd() : LineSegment , XMLToken
• setEndHead() : DefaultValues , RenderCurve , RenderGroup
• setEOF() : XMLToken
• setErrorLog() : XMLInputStream
• setExponent() : Unit
• setExtentConversionFactor() : Submodel
• setExtentUnits() : Model
• setFamilyName() : ModelCreator
• setFast() : Reaction
• setFill() : DefaultValues , GraphicalPrimitive2D
• setFillColor() : GraphicalPrimitive2D
• setFillRule() : DefaultValues , GraphicalPrimitive2D
• setFloatValue() : ConversionOption , ConversionProperties
• setFocalPoint() : RadialGradient
• setFontFamily() : DefaultValues , RenderGroup , Text
• setFontSize() : DefaultValues , RenderGroup , Text
• setFontStyle() : DefaultValues , RenderGroup , Text
• setFontWeight() : DefaultValues , RenderGroup , Text
• setFormula() : KineticLaw , Rule
• setFx() : RadialGradient
• setFy() : RadialGradient
• setFz() : RadialGradient
• setGeneProduct() : GeneProductRef
• setGeneProductAssociation() : FbcReactionPlugin
• setGivenName() : ModelCreator
• setGlyphId() : ReferenceGlyph
• setGraphicalObjectId() : TextGlyph
• setGreen() : ColorDefinition
• setGroup() : LineEnding , Style
• setHasOnlySubstanceUnits() : Species
• setHeight() : BoundingBox , Dimensions , Image , Rectangle
• setHour() : Date
• setHoursOffset() : Date
• setHref() : Image
• setId() : ASTNode , BoundingBox , ColorDefinition , Compartment , CompartmentReference , CompartmentType , Deletion , Dimensions , Event , ExternalModelDefinition , FluxBound , FluxObjective , FunctionDefinition , GeneAssociation , GeneProduct , GeneProductAssociation , GeneProductRef , GradientBase , GraphicalObject , GraphicalPrimitive1D , Group , Image , Input , InSpeciesTypeBond , Layout , LineEnding , ListOfMembers , Member , Model , MultiSpeciesType , Objective , Output , OutwardBindingSite , Parameter , Point , Port , PossibleSpeciesFeatureValue , QualitativeSpecies , Reaction , RenderInformationBase , SBase , SimpleSpeciesReference , Species , SpeciesFeature , SpeciesFeatureType , SpeciesType , SpeciesTypeComponentIndex , SpeciesTypeComponentMapInProduct , SpeciesTypeInstance , Style , SubListOfSpeciesFeatures , Submodel , Transition , UnitDefinition
• setIdAttribute() : SBase
• setIdentifyingParent() : SpeciesTypeComponentIndex
• setIdList() : LocalStyle
• setIdRef() : Member , SBaseRef
• setImageReference() : Image
• setInitialAmount() : Species
• setInitialConcentration() : Species
• setInitialLevel() : QualitativeSpecies
• setInitialValue() : Trigger
• setIntValue() : ConversionOption , ConversionProperties
• setIsType() : MultiCompartmentPlugin
• setKey() : ConversionOption
• setKind() : Group , Unit
• setKineticLaw() : Reaction
• setL1TypeCode() : Rule
• setLabel() : GeneProduct
• setLengthUnits() : Model
• setLevelAndVersion() : SBMLDocument
• setLibraryName() : XMLOutputStream
• setLibraryVersion() : XMLOutputStream
• setLine() : XMLError
• setLinearGradient_x1() : DefaultValues
• setLinearGradient_x2() : DefaultValues
• setLinearGradient_y1() : DefaultValues
• setLinearGradient_y2() : DefaultValues
• setLinearGradient_z1() : DefaultValues
• setLinearGradient_z2() : DefaultValues
• setLocationURI() : SBMLDocument
• setLowerFluxBound() : FbcReactionPlugin
• setMajorVersion() : ListOfGlobalRenderInformation , ListOfLocalRenderInformation
• setMath() : Constraint , Delay , EventAssignment , FunctionDefinition , FunctionTerm , InitialAssignment , KineticLaw , Priority , Rule , StoichiometryMath , Trigger
• setMatrix() : Transformation2D , Transformation
• setMatrix2D() : Transformation2D
• setMaxLevel() : QualitativeSpecies
• setMd5() : ExternalModelDefinition
• setMessage() : Constraint
• setMetaId() : SBase
• setMetaIdRef() : GraphicalObject , Member , SBaseRef
• setMinorVersion() : ListOfGlobalRenderInformation , ListOfLocalRenderInformation
• setMinute() : Date
• setMinutesOffset() : Date
• setModel() : L3ParserSettings , SBMLDocument
• setModelHistory() : SBase
• setModelQualifierType() : CVTerm
• setModelRef() : ExternalModelDefinition , Submodel
• setModifiedDate() : ModelHistory
• setMonth() : Date
• setMultiplier() : Unit
• setName() : ASTNode , ColorDefinition , Compartment , CompartmentReference , CompartmentType , Deletion , Event , ExternalModelDefinition , FluxBound , FluxObjective , FunctionDefinition , GeneProduct , GeneProductAssociation , GeneProductRef , GradientBase , Group , Input , InSpeciesTypeBond , Layout , ListOfMembers , Member , Model , ModelCreator , MultiSpeciesType , Objective , Output , OutwardBindingSite , Parameter , Port , PossibleSpeciesFeatureValue , QualitativeSpecies , Reaction , RenderInformationBase , SBase , SimpleSpeciesReference , Species , SpeciesFeature , SpeciesFeatureType , SpeciesType , SpeciesTypeComponentIndex , SpeciesTypeComponentMapInProduct , SpeciesTypeInstance , Style , SubListOfSpeciesFeatures , Submodel , Transformation , Transition , UnitDefinition
• setNamespaces() : SBase , XMLToken
• setNotes() : SBase
• setNumericValue() : PossibleSpeciesFeatureValue
• setObjectRole() : RenderGraphicalObjectPlugin
• setOccur() : SpeciesFeature , SpeciesFeatureType
• setOffset() : GradientStop , Unit
• setOffsets() : Point , RenderPoint
• setOperation() : FluxBound
• setOrder() : CompartmentGlyph
• setOrganisation() : ModelCreator
• setOrganization() : ModelCreator
• setOriginOfTextId() : TextGlyph
• setOutputLevel() : Output
• setOutside() : Compartment
• setPackageRequired() : SBMLDocument
• setParseAvogadroCsymbol() : L3ParserSettings
• setParseCollapseMinus() : L3ParserSettings
• setParseL3v2Functions() : L3ParserSettings
• setParseLog() : L3ParserSettings
• setParseModuloL3v2() : L3ParserSettings
• setParsePackageMath() : L3ParserSettings
• setParseUnits() : L3ParserSettings
• setPersistent() : Trigger
• setPkgRequired() : SBMLDocument
• setPoint1() : LinearGradient
• setPoint2() : LinearGradient
• setPortRef() : Port , SBaseRef
• setPosition() : BoundingBox
• setPriority() : Event
• setProductComponent() : SpeciesTypeComponentMapInProduct
• setProgramName() : RenderInformationBase , SBMLWriter
• setProgramVersion() : RenderInformationBase , SBMLWriter
• setProperties() : SBMLConverter
• setQualifierType() : CVTerm
• setQualitativeSpecies() : Input , Output
• setR() : RadialGradient
• setRadialGradient_cx() : DefaultValues
• setRadialGradient_cy() : DefaultValues
• setRadialGradient_cz() : DefaultValues
• setRadialGradient_fx() : DefaultValues
• setRadialGradient_fy() : DefaultValues
• setRadialGradient_fz() : DefaultValues
• setRadialGradient_r() : DefaultValues
• setRadii() : Ellipse , Rectangle
• setRadius() : RadialGradient
• setRadiusX() : Rectangle
• setRadiusY() : Rectangle
• setRatio() : Ellipse , Rectangle
• setReactant() : SpeciesTypeComponentMapInProduct
• setReactantComponent() : SpeciesTypeComponentMapInProduct
• setReaction() : FluxBound , FluxObjective , GeneAssociation
• setReactionId() : ReactionGlyph
• setRed() : ColorDefinition
• setReference() : Association
• setReferenceId() : GeneralGlyph , ReferenceGlyph
• setReferenceRenderInformation() : RenderInformationBase
• setReferenceRenderInformationId() : RenderInformationBase
• setRelation() : SubListOfSpeciesFeatures
• setRelativeValue() : RelAbsVector
• setReplacedBy() : CompSBasePlugin
• setRepresentationType() : MultiASTPlugin
• setRequired() : CompSBMLDocumentPlugin , SBMLDocumentPlugin
• setResultLevel() : DefaultTerm , FunctionTerm
• setReversible() : Reaction
• setRGBA() : ColorDefinition
• setRole() : ReferenceGlyph , SpeciesReferenceGlyph
• setRoleList() : Style
• setRX() : Ellipse , Rectangle
• setRY() : Ellipse , Rectangle
• setSBaseRef() : SBaseRef
• setSBMLNamespaces() : XMLInputStream , XMLOutputStream
• setSBOTerm() : SBase
• setScale() : Unit
• setSecond() : Date
• setSeverityOverride() : XMLErrorLog
• setSign() : Input
• setSignOffset() : Date
• setSize() : Compartment , Rectangle
• setSource() : ExternalModelDefinition
• setSpatialDimensions() : Compartment
• setSpatialSizeUnits() : Species
• setSpecies() : SimpleSpeciesReference
• setSpeciesFeatureType() : SpeciesFeature
• setSpeciesGlyphId() : SpeciesReferenceGlyph
• setSpeciesId() : SpeciesGlyph
• setSpeciesReference() : MultiASTPlugin
• setSpeciesReferenceId() : SpeciesReferenceGlyph
• setSpeciesType() : MultiSpeciesPlugin , Species , SpeciesTypeInstance
• setSpreadMethod() : DefaultValues , GradientBase
• setStart() : LineSegment
• setStartHead() : DefaultValues , RenderCurve , RenderGroup
• setStoichiometry() : SpeciesReference
• setStoichiometryMath() : SpeciesReference
• setStopColor() : GradientStop
• setStrict() : FbcModelPlugin
• setStroke() : DefaultValues , GraphicalPrimitive1D
• setStrokeDashArray() : GraphicalPrimitive1D
• setStrokeWidth() : DefaultValues , GraphicalPrimitive1D
• setStyle() : ASTNode
• setSubmodelRef() : Replacing
• setSubstanceConversionFactor() : Submodel
• setSubstanceUnits() : KineticLaw , Model , Species
• setSymbol() : InitialAssignment
• setTargetNamespaces() : ConversionProperties
• setText() : Text , TextGlyph
• setTextAnchor() : DefaultValues , RenderGroup , Text
• setThresholdLevel() : Input
• setTimeConversionFactor() : Submodel
• setTimeUnits() : Event , KineticLaw , Model
• setTransform() : Transformation
• setTransformer() : CompModelPlugin
• setTransitionEffect() : Input , Output
• setTrigger() : Event
• setTriple() : XMLToken
• setType() : Association , ASTNode , ConversionOption , Objective
• setTypeList() : Style
• setUnitRef() : SBaseRef
• setUnits() : ASTNode , Compartment , Parameter , Rule , Species
• setUpperFluxBound() : FbcReactionPlugin
• setUserData() : ASTNode , ElementFilter , SBase
• setUseValuesFromTriggerTime() : Event
• setValue() : ASTNode , ColorDefinition , ConversionOption , ConversionProperties , FluxBound , Parameter , SpeciesFeatureValue
• setVariable() : EventAssignment , Rule
• setVersion() : ListOfGlobalRenderInformation , ListOfLocalRenderInformation
• setVolume() : Compartment
• setVolumeUnits() : Model
• setVTextAnchor() : DefaultValues , RenderGroup , Text
• setWidth() : BoundingBox , Dimensions , Image , Rectangle
• setWriteComment() : XMLOutputStream
• setWriteTimestamp() : XMLOutputStream
• setX() : BoundingBox , Image , Point , Rectangle , RenderPoint , Text
• setX1() : LinearGradient
• setX2() : LinearGradient
• setXOffset() : Point
• setY() : BoundingBox , Image , Point , Rectangle , RenderPoint , Text
• setY1() : LinearGradient
• setY2() : LinearGradient
• setYear() : Date
• setYOffset() : Point
• setZ() : BoundingBox , Image , Point , Rectangle , RenderPoint , Text
• setZ1() : LinearGradient
• setZ2() : LinearGradient
• setZOffset() : Point
• SimpleSpeciesReference() : SimpleSpeciesReference
• simplify() : UnitDefinition
• size() : ListOf , ListOfSpeciesFeatures
• skipPastEnd() : XMLInputStream
• skipText() : XMLInputStream
• Species() : Species
• SpeciesFeature() : SpeciesFeature
• SpeciesFeatureType() : SpeciesFeatureType
• SpeciesFeatureValue() : SpeciesFeatureValue
• SpeciesGlyph() : SpeciesGlyph
• SpeciesReference() : SpeciesReference
• SpeciesReferenceGlyph() : SpeciesReferenceGlyph
• SpeciesType() : SpeciesType
• SpeciesTypeComponentIndex() : SpeciesTypeComponentIndex
• SpeciesTypeComponentMapInProduct() : SpeciesTypeComponentMapInProduct
• SpeciesTypeInstance() : SpeciesTypeInstance
• startElement() : XMLOutputStream
• startEndElement() : XMLOutputStream
• StoichiometryMath() : StoichiometryMath
• straighten() : CubicBezier
• stringToInt() : SBO
• Style() : Style
• SubListOfSpeciesFeatures() : SubListOfSpeciesFeatures
• Submodel : ExternalModelDefinition , Submodel
• SupportedPackageURIList : SBasePluginCreatorBase
• SupportedPackageURIListIter : SBasePluginCreatorBase
• swapChildren() : ASTNode