sbml Directory Reference

Directory dependency graph for sbml:

Directories
	annotation
	common
	conversion
	extension
	math
	packages
	util
	validator
	xml

Files
	AlgebraicRule.cpp
	Implementations of AlgebraicRule.
	AlgebraicRule.h
	Definitions of AlgebraicRule.
	AssignmentRule.cpp
	Implementations of AssignmentRule.
	AssignmentRule.h
	Definitions of AssignmentRule.
	Compartment.cpp
	Implementations of Compartment and ListOfCompartments.
	Compartment.h
	Definitions of Compartment and ListOfCompartments.
	CompartmentType.cpp
	Implementation of CompartmentType and ListOfCompartmentTypes.
	CompartmentType.h
	Definitions of CompartmentType and ListOfCompartmentTypes.
	Constraint.cpp
	Implementations of Constraint and ListOfConstraints.
	Constraint.h
	Definitions of Constraint and ListOfConstraints.
	Delay.cpp
	Implementation of Delay.
	Delay.h
	Definition of Delay.
	Event.cpp
	Implementations of Event and ListOfEvents.
	Event.h
	Definitions of Event and ListOfEvents.
	EventAssignment.cpp
	Implementation of EventAssignment.
	EventAssignment.h
	Definition of EventAssignment and ListOfEventAssignments.
	ExpectedAttributes.cpp
	Implementation of ExpectedAttributes, the class allowing the specification of attributes to expect.
	ExpectedAttributes.h
	Definition of ExpectedAttributes, the class allowing the specification of attributes to expect.
	FunctionDefinition.cpp
	Implementation of FunctionDefinition and ListOfFunctionDefinitions.
	FunctionDefinition.h
	Definitions of FunctionDefinition and ListOfFunctionDefinitions.
	InitialAssignment.cpp
	Implementation of InitialAssignment and ListOfInitialAssignments.
	InitialAssignment.h
	Definitions of InitialAssignment and ListOfInitialAssignments.
	KineticLaw.cpp
	Implementation of KineticLaw.
	KineticLaw.h
	Definition of KineticLaw.
	ListOf.cpp
	Wraps List and inherits from SBase.
	ListOf.h
	LocalParameter.cpp
	Implementations of LocalLocalParameter and ListOfLocalLocalParameters.
	LocalParameter.h
	Definitions of LocalParameter and ListOfLocalParameters.
	Model.cpp
	Implementation of Model.
	Model.h
	Definition of Model.
	ModifierSpeciesReference.cpp
	Implementation of ModifierSpeciesReference.
	ModifierSpeciesReference.h
	Definitions of ModifierSpeciesReference.
	Parameter.cpp
	Implementations of Parameter and ListOfParameters.
	Parameter.h
	Definitions of Parameter and ListOfParameters.
	Priority.cpp
	Implementation of Priority.
	Priority.h
	Definition of Priority.
	RateRule.cpp
	Implementations of RateRule.
	RateRule.h
	Definitions of RateRule.
	Reaction.cpp
	Implementations of Reaction and ListOfReactions.
	Reaction.h
	Definitions of Reaction and ListOfReactions.
	Rule.cpp
	Implementations of Rule and ListOfRules.
	Rule.h
	Definitions of Rule and ListOfRules.
	SBase.cpp
	Implementation of SBase, the base object of all SBML objects.
	SBase.h
	Definition of SBase, the base object of all SBML objects.
	SBMLConstructorException.cpp
	Implementation of SBMLConstructorException, the exception class for constructor exceptions.
	SBMLConstructorException.h
	Definition of SBMLConstructorException, the exception class for constructor exceptions.
	SBMLConvert.cpp
	Performs conversion between SBML levels.
	SBMLDocument.cpp
	Implementation of the top-level container for an SBML Model and associated data.
	SBMLDocument.h
	Top-level container for an SBML Model and associated data.
	SBMLError.cpp
	Represents SBML errors and other diagnostics.
	SBMLError.h
	Represents SBML errors and other diagnostics.
	SBMLErrorLog.cpp
	Stores errors (and messages) encountered while processing SBML.
	SBMLErrorLog.h
	Stores errors (and messages) encountered while processing SBML.
	SBMLErrorTable.h
	Represents SBML errors and other diagnostics.
	SBMLNamespaces.cpp
	SBMLNamespaces class to store level/version and namespace.
	SBMLNamespaces.h
	SBMLNamespaces class to store level/version and namespace.
	SBMLReader.cpp
	Reads an SBML Document into memory.
	SBMLReader.h
	Reads an SBML Document into memory.
	SBMLTransforms.cpp
	Transform functions.
	SBMLTransforms.h
	SBMLTypeCodes.cpp
	Enumeration to identify SBML objects at runtime.
	SBMLTypeCodes.h
	Enumeration to identify SBML objects at runtime.
	SBMLTypes.h
	Include all SBML types in a single header file.
	SBMLVisitor.cpp
	Visitor Design Pattern for the SBML object tree.
	SBMLVisitor.h
	Visitor Design Pattern for the SBML object tree.
	SBMLWriter.cpp
	Writes an SBML Document to file or in-memory string.
	SBMLWriter.h
	Writes an SBML Document to file or in-memory string.
	SBO.cpp
	SBO utility functions.
	SBO.h
	SBO utility Function.
	SimpleSpeciesReference.cpp
	Implementation of SimpleSpeciesReference.
	SimpleSpeciesReference.h
	Definitions of SimpleSpeciesReference.
	Species.cpp
	Implementations of Species and ListOfSpecies.
	Species.h
	Definitions of Species and ListOfSpecies.
	SpeciesReference.cpp
	Implementation of SpeciesReference and ListOfSpeciesReferences.
	SpeciesReference.h
	Definitions of SpeciesReference and ListOfSpeciesReferences.
	SpeciesType.cpp
	Implementation of SpeciesType and ListOfSpeciesTypes.
	SpeciesType.h
	Definitions of SpeciesType and ListOfSpeciesType.
	StoichiometryMath.cpp
	Implementation of StoichiometryMath.
	StoichiometryMath.h
	Definition of StoichiometryMath.
	SyntaxChecker.cpp
	Syntax checking functions.
	SyntaxChecker.h
	Syntax checking functions.
	Trigger.cpp
	Implementation of Trigger.
	Trigger.h
	Definition of Trigger.
	Unit.cpp
	Implementations of Unit and ListOfUnits.
	Unit.h
	Definitions of Unit and ListOfUnits.
	UnitDefinition.cpp
	Implementations of SBML's UnitDefinition and ListOfUnitDefinitions.
	UnitDefinition.h
	Definitions of UnitDefinition and ListOfUnitDefinitions.
	UnitKind.c
	SBML UnitKind enumeration.
	UnitKind.h
	Definition of SBML's UnitKind enumeration.