- name - Static variable in class org.sbml.jsbml.ext.qual.QualConstants
-
- name - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- NamedSBase - Interface in org.sbml.jsbml
-
Base class for all the SBML components with an id and a name (optional or
not).
- NamedSBaseReferenceFilter - Class in org.sbml.jsbml.ext.layout
-
- NamedSBaseReferenceFilter() - Constructor for class org.sbml.jsbml.ext.layout.NamedSBaseReferenceFilter
-
- NamedSBaseReferenceFilter(NamedSBase) - Constructor for class org.sbml.jsbml.ext.layout.NamedSBaseReferenceFilter
-
- NamedSBaseReferenceFilter(String) - Constructor for class org.sbml.jsbml.ext.layout.NamedSBaseReferenceFilter
-
- NamedSBaseReferenceFilter(String, String) - Constructor for class org.sbml.jsbml.ext.layout.NamedSBaseReferenceFilter
-
- NamedSBaseWithDerivedUnit - Interface in org.sbml.jsbml
-
All objects that implement this interface can be referenced in abstract
syntax trees as implemented in
ASTNode
.
- NameFilter - Class in org.sbml.jsbml.util.filters
-
This filter only accepts instances of
NamedSBase
with the name as
given in the constructor of this object.
- NameFilter() - Constructor for class org.sbml.jsbml.util.filters.NameFilter
-
- NameFilter(String) - Constructor for class org.sbml.jsbml.util.filters.NameFilter
-
- NameFilter(String, String) - Constructor for class org.sbml.jsbml.util.filters.NameFilter
-
- namespace - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- namespaces - Static variable in class org.sbml.jsbml.ext.arrays.ArraysConstants
-
- namespaces - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
-
- namespaces - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants
-
- namespaces - Static variable in class org.sbml.jsbml.ext.dyn.DynConstants
-
- namespaces - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
-
- namespaces - Static variable in class org.sbml.jsbml.ext.groups.GroupsConstants
-
- namespaces - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
-
- namespaces - Static variable in class org.sbml.jsbml.ext.qual.QualConstants
-
- namespaces - Static variable in class org.sbml.jsbml.ext.req.ReqConstants
-
- namespaces - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
-
- namespaces_L2 - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
-
- namespaces_L2 - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
-
- namespaces_L3 - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
-
- namespaces_L3 - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
-
- namespaceURI - Static variable in class org.sbml.jsbml.ext.arrays.ArraysConstants
-
The namespace URI of this parser, this value can change between releases.
- namespaceURI - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
-
The latest namespace URI of this parser, this value can change between releases.
- namespaceURI - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants
-
- namespaceURI - Static variable in class org.sbml.jsbml.ext.dyn.DynConstants
-
The latest namespace URI of this parser, this value can change between
releases.
- namespaceURI - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
-
The latest namespace URI of this parser, this value can change between releases.
- namespaceURI - Static variable in class org.sbml.jsbml.ext.groups.GroupsConstants
-
The namespace URI of this parser, this value can change between releases.
- namespaceURI - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
-
The latest namespace URI of this parser, this value can change between releases.
- namespaceURI - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
-
The latest namespace URI of this parser, this value can change between releases.
- namespaceURI - Static variable in class org.sbml.jsbml.ext.qual.QualConstants
-
The latest namespace URI of this parser, this value can change between releases.
- namespaceURI - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
-
The latest namespace URI of this parser, this value can change between releases.
- namespaceURI - Static variable in class org.sbml.jsbml.ext.req.ReqConstants
-
The latest namespace URI of this parser, this value can change between releases.
- namespaceURI - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
-
The latest namespace URI of this parser, this value can change between releases.
- namespaceURI_L2 - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
-
- namespaceURI_L2 - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
-
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.arrays.ArraysConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package version 1.
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package version 1.
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants
-
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.dyn.DynConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package
version 1.
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package version 1.
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.groups.GroupsConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package version 1.
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package version 1.
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package version 1.
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.qual.QualConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package version 1.
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package version 1.
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.req.ReqConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package version 1.
- namespaceURI_L3V1V1 - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package version 1.
- namespaceURI_L3V1V2 - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
-
The namespace URI of this parser for SBML level 3, version 1 and package version 2.
- namespaceURIrequired - Static variable in class org.sbml.jsbml.xml.parsers.SpatialParser
-
The name space of required elements.
- NEGATIVE_ININITY - Static variable in class org.sbml.jsbml.math.compiler.LaTeXCompiler
-
- NEGATIVE_ININITY - Static variable in class org.sbml.jsbml.util.compilers.LaTeXCompiler
-
- neq(ASTNode, ASTNode) - Static method in class org.sbml.jsbml.ASTNode
-
Creates an
ASTNode
that performs a not equal comparison between
two
ASTNode
s.
- neq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
-
- neq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
-
- neq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
-
- neq(ASTNode2, ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory
-
- neq(ASTNode2, ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler
-
Not equal.
- neq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
-
- neq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
-
- neq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
-
- neq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LibSBMLFormulaCompiler
-
- neq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
-
- neq(ASTNode, ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler
-
Not equal.
- neq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
-
- neq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
-
- neq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompilerLibSBML
-
- neq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
-
- neq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LibSBMLFormulaCompiler
-
- neq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler
-
Deprecated.
- neq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
-
- newBundle(String, Locale, String, ClassLoader, boolean) - Method in class org.sbml.jsbml.util.XMLResourceBundleControl
-
- newInstance(SBase, Class<T>) - Static method in class org.sbml.jsbml.ListOf
-
Helper method to initialize a new
ListOf
object for the given
parent SBML object and with the given
Class
as the type of the
list.
- newLine() - Static method in class org.sbml.jsbml.util.StringTools
-
- newToken(int, String) - Static method in class org.sbml.jsbml.math.parser.Token
-
Returns a new Token object, by default.
- newToken(int) - Static method in class org.sbml.jsbml.math.parser.Token
-
- newToken(int, String) - Static method in class org.sbml.jsbml.text.parser.Token
-
Returns a new Token object, by default.
- newToken(int) - Static method in class org.sbml.jsbml.text.parser.Token
-
- next - Variable in class org.sbml.jsbml.math.parser.Token
-
A reference to the next regular (non-special) token from the input
stream.
- next - Variable in class org.sbml.jsbml.text.parser.Token
-
A reference to the next regular (non-special) token from the input
stream.
- nextMetaId() - Method in class org.sbml.jsbml.SBMLDocument
-
Randomly creates a new
String
that can be used as a metaid, i.e., a
String that is a valid metaid and that is not yet used by any other element
within this
SBMLDocument
.
- nodeAdded(TreeNode) - Method in class org.sbml.jsbml.util.SimpleTreeNodeChangeListener
-
- nodeAdded(TreeNode) - Method in interface org.sbml.jsbml.util.TreeNodeChangeListener
-
The
TreeNode
passed to this method has just been added to the
a containing element.
- nodeRemoved(TreeNodeRemovedEvent) - Method in class org.sbml.jsbml.util.SimpleTreeNodeChangeListener
-
- nodeRemoved(TreeNodeRemovedEvent) - Method in interface org.sbml.jsbml.util.TreeNodeChangeListener
-
The
TreeNodeRemovedEvent
passed to this method provides information
about the node that has been removed from a
containing parent and does hence no longer belong to the
SBMLDocument
anymore.
- NodeWriter - Interface in org.sbml.jsbml.util
-
A writer for XML DOM nodes.
- nonRDFAnnotation - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- not(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
-
- not(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
-
- not(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
-
- not(ASTNode2...) - Static method in class org.sbml.jsbml.math.ASTFactory
-
- not(ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler
-
- not(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
-
- not(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
-
- not(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
-
- not(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
-
- NOT - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants
-
RegularExpression Id.
- NOT - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserConstants
-
RegularExpression Id.
- NOT - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants
-
RegularExpression Id.
- NOT - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3Constants
-
RegularExpression Id.
- NOT - Static variable in interface org.sbml.jsbml.text.parser.CobraFormulaParserConstants
-
RegularExpression Id.
- NOT - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants
-
RegularExpression Id.
- NOT - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserConstants
-
RegularExpression Id.
- NOT - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants
-
RegularExpression Id.
- NOT - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3Constants
-
RegularExpression Id.
- not(ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler
-
- not(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
-
- not(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
-
- not(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompilerLibSBML
-
- not(ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
-
- not(ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler
-
Deprecated.
- not(ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
-
- notes - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- NotImplementedException - Error in org.sbml.jsbml.util
-
This kind of
Exception
indicates currently missing functionality in
JSBML.
- NotImplementedException() - Constructor for error org.sbml.jsbml.util.NotImplementedException
-
- NotImplementedException(String) - Constructor for error org.sbml.jsbml.util.NotImplementedException
-
- NotImplementedException(Throwable) - Constructor for error org.sbml.jsbml.util.NotImplementedException
-
- NotImplementedException(String, Throwable) - Constructor for error org.sbml.jsbml.util.NotImplementedException
-
- NUMBER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants
-
RegularExpression Id.
- NUMBER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserConstants
-
RegularExpression Id.
- NUMBER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants
-
RegularExpression Id.
- NUMBER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3Constants
-
RegularExpression Id.
- NUMBER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants
-
RegularExpression Id.
- NUMBER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserConstants
-
RegularExpression Id.
- NUMBER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants
-
RegularExpression Id.
- NUMBER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3Constants
-
RegularExpression Id.
- number - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- numBvars - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- numerator - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- numericValue - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
-
- numPiece - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- numSamples1 - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
-
- numSamples2 - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
-
- numSamples3 - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
-