- validate(Model, MathContainer) - Static method in class org.sbml.jsbml.ext.arrays.validator.ArraysMathValidator
-
Validates the given
SBase object.
- validate(SBMLDocument) - Static method in class org.sbml.jsbml.ext.arrays.validator.ArraysValidator
-
Validates the given SBMLDocument
- validate(SBMLDocument, boolean) - Static method in class org.sbml.jsbml.ext.arrays.validator.ArraysValidator
-
Validates the given SBMLDocument
- validate(Model, Dimension) - Static method in class org.sbml.jsbml.ext.arrays.validator.DimensionValidator
-
Validates the given
SBase object.
- validate(Model, SBase) - Static method in class org.sbml.jsbml.ext.arrays.validator.ExtendedSBaseValidator
-
Validates the given SBase object.
- validate(Model, Index) - Static method in class org.sbml.jsbml.ext.arrays.validator.IndexValidator
-
Validates the given
SBase object.
- value - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants
-
- value - Static variable in class org.sbml.jsbml.ext.multi.MultiConstants
-
- value - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
-
- value - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
-
- value - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- valueOf(String) - Static method in enum org.sbml.jsbml.ASTNode.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.CVTerm.Qualifier
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.CVTerm.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.dyn.SpatialKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.fbc.FBCList
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.fbc.FluxBound.Operation
-
Deprecated.
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.fbc.Objective.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.groups.Group.Kind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.layout.CurveSegment.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.layout.SpeciesReferenceRole
-
Returns the enum constant of this type with the specified name.
- valueOf(int) - Static method in enum org.sbml.jsbml.ext.layout.SpeciesReferenceRole
-
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.multi.BindingStatus
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.multi.Relation
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.multi.RepresentationType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.qual.InputTransitionEffect
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.qual.OutputTransitionEffect
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.qual.QualList
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.qual.Sign
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.render.FontFamily
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.render.GraphicalPrimitive2D.FillRule
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.render.TextAnchor
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.render.VTextAnchor
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.spatial.BoundaryConditionKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.spatial.CompressionKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.spatial.CoordinateKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.spatial.DataKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.spatial.DiffusionKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.spatial.FunctionKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.spatial.GeometryKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.spatial.InterpolationKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.spatial.PolygonKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.spatial.PrimitiveKind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ext.spatial.SetOperation
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.ListOf.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(Class<? extends SBase>) - Static method in enum org.sbml.jsbml.ListOf.Type
-
- valueOf(String) - Static method in enum org.sbml.jsbml.SBMLError.SEVERITY
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.SBMLException.Category
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.SBMLException.Code
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.SBMLException.Type
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.Unit.Kind
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum org.sbml.jsbml.validator.SBMLValidator.CHECK_CATEGORY
-
Returns the enum constant of this type with the specified name.
- ValuePair<L extends Comparable<? super L>,V extends Comparable<? super V>> - Class in org.sbml.jsbml.util
-
A pair of two values with type parameters.
- ValuePair() - Constructor for class org.sbml.jsbml.util.ValuePair
-
Creates a new
ValuePair with both attributes set to
null.
- ValuePair(L, V) - Constructor for class org.sbml.jsbml.util.ValuePair
-
- ValuePair(ValuePair<L, V>) - Constructor for class org.sbml.jsbml.util.ValuePair
-
- valuePairOf(L, V) - Static method in class org.sbml.jsbml.util.ValuePair
-
Can be used for static import, i.e. use
import static org.sbml.jsbml.util.ValuePair.pairOf
in your class to easily create ValuePairs of arbitrary data types
with a simple method call, e.g., valuePairOf(1, 2).
- values() - Static method in enum org.sbml.jsbml.ASTNode.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.CVTerm.Qualifier
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.CVTerm.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.dyn.SpatialKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.fbc.FBCList
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.fbc.FluxBound.Operation
-
Deprecated.
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.fbc.Objective.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.groups.Group.Kind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.layout.CurveSegment.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.layout.SpeciesReferenceRole
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.multi.BindingStatus
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.multi.Relation
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.multi.RepresentationType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.qual.InputTransitionEffect
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.qual.OutputTransitionEffect
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.qual.QualList
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.qual.Sign
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.render.FontFamily
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.render.GraphicalPrimitive2D.FillRule
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.render.TextAnchor
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.render.VTextAnchor
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.spatial.BoundaryConditionKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.spatial.CompressionKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.spatial.CoordinateKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.spatial.DataKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.spatial.DiffusionKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.spatial.FunctionKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.spatial.GeometryKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.spatial.InterpolationKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.spatial.PolygonKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.spatial.PrimitiveKind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ext.spatial.SetOperation
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.ListOf.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.SBMLError.SEVERITY
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.SBMLException.Category
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.SBMLException.Code
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.SBMLException.Type
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.Unit.Kind
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum org.sbml.jsbml.validator.SBMLValidator.CHECK_CATEGORY
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- variable - Static variable in class org.sbml.jsbml.ext.dyn.DynConstants
-
- variable - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
-
- variable - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- Variable - Interface in org.sbml.jsbml
-
A variable of the system is a
Quantity whose value may change during
a simulation.
- vector(List<ASTNode>) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
-
- vector(List<ASTNode>) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
-
- vector(List<ASTNode>) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
-
- vector(List<ASTNode2>) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler
-
Dealing with a vector.
- vector(List<ASTNode2>) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
-
- vector(List<ASTNode2>) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
-
- vector(List<ASTNode2>) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
-
- vector(List<ASTNode2>) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
-
- vector(List<ASTNode>) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler
-
Dealing with a vector.
- vector(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
-
- vector(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
-
- vector(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
-
- vector(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler
-
Deprecated.
- vector(List<ASTNode>) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
-
- VectorCompiler - Class in org.sbml.jsbml.ext.arrays.compiler
-
- VectorCompiler(Model) - Constructor for class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
-
- VectorCompiler(Model, boolean) - Constructor for class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
-
- VectorCompiler(Model, NamedSBase, boolean) - Constructor for class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
-
- VectorCompiler(Model, boolean, Map<String, ASTNode>) - Constructor for class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
-
- version - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- VERSION_MISMATCH - Static variable in class org.sbml.jsbml.JSBML
-
- VERSION_MISMATCH_MSG - Static variable in exception org.sbml.jsbml.LevelVersionError
-
Message to display in cases that two objects do not have identical
version attributes.
- versionMajor - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
-
- versionMinor - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
-
- versionMismatchMessage(SBase, SBase) - Static method in exception org.sbml.jsbml.LevelVersionError
-
Creates an error message if the version fields of both elements are not
identical, or an empty
String otherwise.
- viableWithoutChange - Static variable in class org.sbml.jsbml.ext.req.ReqConstants
-
- VOLUME - Static variable in class org.sbml.jsbml.UnitDefinition
-
Identifier of the (for some SBML Levels 1 and 2) predefined
UnitDefinition volume.
- volume(int, int) - Static method in class org.sbml.jsbml.UnitDefinition
-
Predefined unit for volume.
- volume - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- volumeUnits - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- vTextAnchor - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
-
- VTextAnchor - Enum in org.sbml.jsbml.ext.render
-
