- Ellipse - Class in org.sbml.jsbml.ext.render
-
- Ellipse() - Constructor for class org.sbml.jsbml.ext.render.Ellipse
-
- Ellipse(Ellipse) - Constructor for class org.sbml.jsbml.ext.render.Ellipse
-
- Ellipse(int, int) - Constructor for class org.sbml.jsbml.ext.render.Ellipse
-
- email - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- EMPTY_SET - Static variable in class org.sbml.jsbml.math.compiler.HTMLFormula
-
HTML code for the empty set symbol “∅”.
- EMPTY_SET - Static variable in class org.sbml.jsbml.util.compilers.HTMLFormula
-
HTML code for the empty set symbol “∅”.
- enable_tracing() - Method in class org.sbml.jsbml.math.parser.FormulaParser
-
Enable tracing.
- enable_tracing() - Method in class org.sbml.jsbml.math.parser.FormulaParserASTNode2
-
Enable tracing.
- enable_tracing() - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3
-
Enable tracing.
- enable_tracing() - Method in class org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2
-
Enable tracing.
- enable_tracing() - Method in class org.sbml.jsbml.text.parser.CobraFormulaParser
-
Enable tracing.
- enable_tracing() - Method in class org.sbml.jsbml.text.parser.FormulaParser
-
Enable tracing.
- enable_tracing() - Method in class org.sbml.jsbml.text.parser.FormulaParserASTNode2
-
Enable tracing.
- enable_tracing() - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3
-
Enable tracing.
- enable_tracing() - Method in class org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2
-
Enable tracing.
- enablePackage(String) - Method in class org.sbml.jsbml.AbstractSBase
-
Enables the given SBML Level 3 package on this
SBMLDocument
.
- enablePackage(String, boolean) - Method in class org.sbml.jsbml.AbstractSBase
-
Enables or disables the given SBML Level 3 package on this
SBMLDocument
.
- enablePackage(String) - Method in interface org.sbml.jsbml.SBase
-
Enables the given SBML Level 3 package on this
SBMLDocument
.
- enablePackage(String, boolean) - Method in interface org.sbml.jsbml.SBase
-
Enables or disables the given SBML Level 3 package on this
SBMLDocument
.
- enablePackage(String) - Method in class org.sbml.jsbml.SBMLDocument
-
Enables the given SBML Level 3 package on this
SBMLDocument
.
- enablePackage(String, boolean) - Method in class org.sbml.jsbml.SBMLDocument
-
Enables or disables the given SBML Level 3 package on this
SBMLDocument
.
- enableRotationMapping - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
-
- encodeArrayDoubleToString(Double[]) - Static method in class org.sbml.jsbml.ext.render.XMLTools
-
- encodeArrayShortToString(Short[]) - Static method in class org.sbml.jsbml.ext.render.XMLTools
-
- encodeColorToString(Color) - Static method in class org.sbml.jsbml.ext.render.XMLTools
-
- encodeForHTML(String) - Static method in class org.sbml.jsbml.util.StringTools
-
- encoding - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants
-
- encoding - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- end - Static variable in class org.sbml.jsbml.ext.layout.LayoutConstants
-
- endColumn - Variable in class org.sbml.jsbml.math.parser.Token
-
The column number of the last character of this Token.
- endColumn - Variable in class org.sbml.jsbml.text.parser.Token
-
The column number of the last character of this Token.
- endHead - Static variable in class org.sbml.jsbml.ext.render.RenderConstants
-
- endLine - Variable in class org.sbml.jsbml.math.parser.Token
-
The line number of the last character of this Token.
- endLine - Variable in class org.sbml.jsbml.text.parser.Token
-
The line number of the last character of this Token.
- EOF - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants
-
End of File.
- EOF - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserConstants
-
End of File.
- EOF - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants
-
End of File.
- EOF - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3Constants
-
End of File.
- EOF - Static variable in interface org.sbml.jsbml.text.parser.CobraFormulaParserConstants
-
End of File.
- EOF - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants
-
End of File.
- EOF - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserConstants
-
End of File.
- EOF - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants
-
End of File.
- EOF - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3Constants
-
End of File.
- EOL - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants
-
RegularExpression Id.
- EOL - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserConstants
-
RegularExpression Id.
- EOL - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants
-
RegularExpression Id.
- EOL - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3Constants
-
RegularExpression Id.
- EOL - Static variable in interface org.sbml.jsbml.text.parser.CobraFormulaParserConstants
-
RegularExpression Id.
- EOL - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants
-
RegularExpression Id.
- EOL - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserConstants
-
RegularExpression Id.
- EOL - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants
-
RegularExpression Id.
- EOL - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3Constants
-
RegularExpression Id.
- eq(ASTNode, ASTNode) - Static method in class org.sbml.jsbml.ASTNode
-
Creates a new
ASTNode
of type RELATIONAL_EQ.
- eq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
-
- eq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
-
- eq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
-
- eq(ASTNode2, ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory
-
- eq(ASTNode2, ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler
-
Equal.
- eq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
-
- eq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
-
- eq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
-
- eq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LibSBMLFormulaCompiler
-
- eq(ASTNode2, ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
-
- eq(ASTNode, ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler
-
Equal.
- eq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
-
- eq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
-
- eq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompilerLibSBML
-
- eq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
-
- eq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.LibSBMLFormulaCompiler
-
- eq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler
-
Deprecated.
- eq(ASTNode, ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
-
- eqBegin - Static variable in class org.sbml.jsbml.math.compiler.LaTeXCompiler
-
Surrounded by new line symbols.
- eqBegin - Static variable in class org.sbml.jsbml.util.compilers.LaTeXCompiler
-
Surrounded by new line symbols.
- eqEnd - Static variable in class org.sbml.jsbml.math.compiler.LaTeXCompiler
-
End equation; cf. eqBegin.
- eqEnd - Static variable in class org.sbml.jsbml.util.compilers.LaTeXCompiler
-
End equation; cf. eqBegin.
- equals(Object) - Method in class org.sbml.jsbml.AbstractNamedSBase
-
- equals(Object) - Method in class org.sbml.jsbml.AbstractNamedSBaseWithUnit
-
- equals(Object) - Method in class org.sbml.jsbml.AbstractSBase
-
- equals(Object) - Method in class org.sbml.jsbml.AbstractTreeNode
-
- equals(Object) - Method in class org.sbml.jsbml.Annotation
-
- equals(Object) - Method in class org.sbml.jsbml.ASTNode
-
- equals(Object) - Method in class org.sbml.jsbml.Compartment
-
- equals(Object) - Method in class org.sbml.jsbml.Creator
-
- equals(Object) - Method in class org.sbml.jsbml.CVTerm
-
- equals(Object) - Method in class org.sbml.jsbml.Event
-
- equals(Object) - Method in class org.sbml.jsbml.EventAssignment
-
- equals(Object) - Method in class org.sbml.jsbml.ExplicitRule
-
- equals(Object) - Method in class org.sbml.jsbml.ext.AbstractSBasePlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.arrays.Dimension
-
- equals(Object) - Method in class org.sbml.jsbml.ext.arrays.Index
-
- equals(Object) - Method in class org.sbml.jsbml.ext.comp.AbstractNamedSBaseRef
-
- equals(Object) - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.comp.CompSBasePlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.comp.ExternalModelDefinition
-
- equals(Object) - Method in class org.sbml.jsbml.ext.comp.ReplacedBy
-
- equals(Object) - Method in class org.sbml.jsbml.ext.comp.ReplacedElement
-
- equals(Object) - Method in class org.sbml.jsbml.ext.comp.SBaseRef
-
- equals(Object) - Method in class org.sbml.jsbml.ext.comp.Submodel
-
- equals(Object) - Method in class org.sbml.jsbml.ext.distrib.DistribInput
-
- equals(Object) - Method in class org.sbml.jsbml.ext.distrib.DrawFromDistribution
-
- equals(Object) - Method in class org.sbml.jsbml.ext.dyn.DynCompartmentPlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.dyn.DynElement
-
- equals(Object) - Method in class org.sbml.jsbml.ext.dyn.DynEventPlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.dyn.DynSBasePlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.dyn.SpatialComponent
-
- equals(Object) - Method in class org.sbml.jsbml.ext.fbc.FBCReactionPlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.fbc.FluxBound
-
Deprecated.
- equals(Object) - Method in class org.sbml.jsbml.ext.fbc.FluxObjective
-
- equals(Object) - Method in class org.sbml.jsbml.ext.fbc.GeneProduct
-
- equals(Object) - Method in class org.sbml.jsbml.ext.fbc.GeneProductRef
-
- equals(Object) - Method in class org.sbml.jsbml.ext.fbc.Objective
-
- equals(Object) - Method in class org.sbml.jsbml.ext.groups.Group
-
- equals(Object) - Method in class org.sbml.jsbml.ext.groups.ListOfMemberConstraint
-
Deprecated.
- equals(Object) - Method in class org.sbml.jsbml.ext.groups.Member
-
- equals(Object) - Method in class org.sbml.jsbml.ext.groups.MemberConstraint
-
Deprecated.
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.AbstractReferenceGlyph
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.BoundingBox
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.CubicBezier
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.Curve
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.CurveSegment
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.Dimensions
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.GraphicalObject
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.Layout
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.LayoutModelPlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.LineSegment
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.Point
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.ReactionGlyph
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.ReferenceGlyph
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph
-
- equals(Object) - Method in class org.sbml.jsbml.ext.layout.TextGlyph
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.DenotedSpeciesTypeComponentIndex
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.InSpeciesTypeBond
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.MultiASTNodePlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.MultiSimpleSpeciesReferencePlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesReferencePlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.OutwardBindingSite
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.PossibleSpeciesFeatureValue
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureChange
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureType
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureValue
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.SpeciesType
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentIndex
-
- equals(Object) - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentMapInProduct
-
- equals(Object) - Method in class org.sbml.jsbml.ext.qual.FunctionTerm
-
- equals(Object) - Method in class org.sbml.jsbml.ext.qual.Input
-
- equals(Object) - Method in class org.sbml.jsbml.ext.qual.Output
-
- equals(Object) - Method in class org.sbml.jsbml.ext.qual.QualConstants
-
- equals(Object) - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies
-
- equals(Object) - Method in class org.sbml.jsbml.ext.qual.Transition
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.ColorDefinition
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.Ellipse
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.GlobalRenderInformation
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.GradientBase
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.GradientStop
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive1D
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive2D
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.Image
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.LinearGradient
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.LocalRenderInformation
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.LocalStyle
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.RenderCurve
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.RenderGroup
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.RenderInformationBase
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.Style
-
- equals(Object) - Method in class org.sbml.jsbml.ext.render.Transformation
-
- equals(Object) - Method in interface org.sbml.jsbml.ext.SBasePlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.AdjacentDomains
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.AdvectionCoefficient
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.AnalyticGeometry
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.AnalyticVolume
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.Boundary
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.BoundaryCondition
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CompartmentMapping
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CoordinateReference
-
Deprecated.
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CSGeometry
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CSGHomogeneousTransformation
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CSGNode
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CSGObject
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CSGPrimitive
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CSGPseudoPrimitive
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CSGRotation
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CSGScale
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CSGTransformation
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.CSGTranslation
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.DiffusionCoefficient
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.Domain
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.DomainType
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.Geometry
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.GeometryDefinition
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.InteriorPoint
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.MixedGeometry
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.OrdinalMapping
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.ParameterType
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.ParametricGeometry
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.ParametricObject
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.PolygonObject
-
Deprecated.
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.SampledField
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.SampledFieldGeometry
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.SampledVolume
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.SpatialReactionPlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.SpatialSpeciesPlugin
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.SpatialSymbolReference
-
- equals(Object) - Method in class org.sbml.jsbml.ext.spatial.TransformationComponent
-
- equals(Object) - Method in class org.sbml.jsbml.FunctionDefinition
-
- equals(Object) - Method in class org.sbml.jsbml.History
-
- equals(Object) - Method in class org.sbml.jsbml.InitialAssignment
-
- equals(Object) - Method in class org.sbml.jsbml.KineticLaw
-
- equals(Object) - Method in class org.sbml.jsbml.ListOf
-
- equals(Object) - Method in class org.sbml.jsbml.LocalParameter
-
- equals(Object) - Method in class org.sbml.jsbml.math.AbstractASTNode
-
- equals(Object) - Method in class org.sbml.jsbml.math.ASTCiFunctionNode
-
- equals(Object) - Method in class org.sbml.jsbml.math.ASTCiNumberNode
-
- equals(Object) - Method in class org.sbml.jsbml.math.ASTCnIntegerNode
-
- equals(Object) - Method in class org.sbml.jsbml.math.ASTCnNumberNode
-
- equals(Object) - Method in class org.sbml.jsbml.math.ASTCnRealNode
-
- equals(Object) - Method in class org.sbml.jsbml.math.ASTCSymbolAvogadroNode
-
- equals(Object) - Method in class org.sbml.jsbml.math.ASTCSymbolDelayNode
-
- equals(Object) - Method in class org.sbml.jsbml.math.ASTCSymbolTimeNode
-
- equals(Object) - Method in class org.sbml.jsbml.math.ASTFunction
-
- equals(Object) - Method in class org.sbml.jsbml.Model
-
- equals(Object) - Method in class org.sbml.jsbml.ontology.Term
-
- equals(Object) - Method in class org.sbml.jsbml.ontology.Triple
-
- equals(Object) - Method in class org.sbml.jsbml.QuantityWithUnit
-
- equals(Object) - Method in class org.sbml.jsbml.Reaction
-
- equals(Object) - Method in interface org.sbml.jsbml.SBase
-
Returns
true
if and only if the given
SBase
has exactly the
same
properties like this
SBase
instance.
- equals(Object) - Method in class org.sbml.jsbml.SBMLDocument
-
- equals(Object) - Method in class org.sbml.jsbml.SBMLReader
-
- equals(Object) - Method in class org.sbml.jsbml.SBMLWriter
-
- equals(Object) - Method in class org.sbml.jsbml.SimpleSpeciesReference
-
- equals(Object) - Method in class org.sbml.jsbml.Species
-
- equals(Object) - Method in class org.sbml.jsbml.SpeciesReference
-
- equals(Object) - Method in class org.sbml.jsbml.Symbol
-
- equals(Object) - Method in class org.sbml.jsbml.Trigger
-
- equals(Object) - Method in class org.sbml.jsbml.Unit
-
- equals(Object) - Method in class org.sbml.jsbml.util.Pair
-
- equals(Object) - Method in class org.sbml.jsbml.util.TreeNodeAdapter
-
- equals(Object) - Method in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- equals(Object) - Method in class org.sbml.jsbml.xml.XMLAttributes
-
Equality comparison method for XMLAttributes.
- equals(Object) - Method in class org.sbml.jsbml.xml.XMLNamespaces
-
Equality comparison method for XMLNamespaces.
- equals(Object) - Method in class org.sbml.jsbml.xml.XMLToken
-
- equals(Object) - Method in class org.sbml.jsbml.xml.XMLTriple
-
Equality comparison method for XMLTriple.
- error(String) - Method in class org.sbml.jsbml.xml.stax.XMLLogger
-
- evaluateBounds(Map<String, Double>, ASTNode, double) - Static method in class org.sbml.jsbml.ext.arrays.util.ArraysMath
-
This method is used to check if the math does not evaluate to a negative number or to a value greater or
equal to a given size value.
- evaluateIndexBounds(Model, Index) - Static method in class org.sbml.jsbml.ext.arrays.util.ArraysMath
-
This method is used to check if the index math does not go out of bounds.
- evaluateIndexBounds(Model, SBase, int, ASTNode, Map<String, Double>) - Static method in class org.sbml.jsbml.ext.arrays.util.ArraysMath
-
This method checks if adding an
Index
object to a parent
SBase
object for referencing another
SBase
object does not
cause out-of-bounds issues.
- evaluateIndexBounds(Model, SBase, String, ASTNode, int) - Static method in class org.sbml.jsbml.ext.arrays.util.ArraysMath
-
This method checks if adding an
Index
object to a parent
SBase
object for referencing another
SBase
object does not
cause out-of-bounds issues.
- evaluateSelectorBounds(Model, MathContainer) - Static method in class org.sbml.jsbml.ext.arrays.util.ArraysMath
-
This is used to check if the arguments of a selector function does not go out of bounds.
- Event - Class in org.sbml.jsbml
-
Represents the event XML element of a SBML file.
- Event() - Constructor for class org.sbml.jsbml.Event
-
Creates an Event instance.
- Event(Event) - Constructor for class org.sbml.jsbml.Event
-
Creates an Event instance from a given event.
- Event(int, int) - Constructor for class org.sbml.jsbml.Event
-
Creates an Event from a level and version.
- Event(String) - Constructor for class org.sbml.jsbml.Event
-
- Event(String, int, int) - Constructor for class org.sbml.jsbml.Event
-
Creates an Event instance from an id, level and version.
- Event(String, String, int, int) - Constructor for class org.sbml.jsbml.Event
-
Creates an Event instance from an id, name, level and version.
- EventAssignment - Class in org.sbml.jsbml
-
Represents the eventAssignment XML element of a SBML file.
- EventAssignment() - Constructor for class org.sbml.jsbml.EventAssignment
-
Creates an EventAssignment instance.
- EventAssignment(EventAssignment) - Constructor for class org.sbml.jsbml.EventAssignment
-
Creates an EventAssignment instance from a given EventAssignment.
- EventAssignment(int, int) - Constructor for class org.sbml.jsbml.EventAssignment
-
Creates an EventAssignment instance from a level and version.
- exp(ASTNode) - Static method in class org.sbml.jsbml.ASTNode
-
Returns a new
ASTNode
that represents Euler's constant raised by the
power of the given exponent.
- exp(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler
-
- exp(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler
-
- exp(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler
-
- exp(ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory
-
Returns a new
ASTPowerNode
that represents Euler's constant raised by the
power of the given exponent.
- exp(ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler
-
- exp(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler
-
- exp(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler
-
- exp(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler
-
- exp(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler
-
- exp(ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler
-
- exp(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler
-
- exp(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler
-
- exp(ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler
-
- exp(ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler
-
Deprecated.
- exp(ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler
-
- expectedTokenSequences - Variable in exception org.sbml.jsbml.math.parser.ParseException
-
Each entry in this array is an array of integers.
- expectedTokenSequences - Variable in exception org.sbml.jsbml.text.parser.ParseException
-
Each entry in this array is an array of integers.
- ExplicitRule - Class in org.sbml.jsbml
-
An explicit
Rule
is a rule that explicitly declares its variable
element.
- ExplicitRule() - Constructor for class org.sbml.jsbml.ExplicitRule
-
- ExplicitRule(ASTNode, int, int) - Constructor for class org.sbml.jsbml.ExplicitRule
-
- ExplicitRule(ASTNode, Variable) - Constructor for class org.sbml.jsbml.ExplicitRule
-
- ExplicitRule(ExplicitRule) - Constructor for class org.sbml.jsbml.ExplicitRule
-
- ExplicitRule(int, int) - Constructor for class org.sbml.jsbml.ExplicitRule
-
- ExplicitRule(Parameter) - Constructor for class org.sbml.jsbml.ExplicitRule
-
- ExplicitRule(Parameter, ASTNode) - Constructor for class org.sbml.jsbml.ExplicitRule
-
- ExplicitRule(Variable) - Constructor for class org.sbml.jsbml.ExplicitRule
-
- ExplicitRule(Variable, ASTNode) - Constructor for class org.sbml.jsbml.ExplicitRule
-
- EXPNUMBER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserASTNode2Constants
-
RegularExpression Id.
- EXPNUMBER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserConstants
-
RegularExpression Id.
- EXPNUMBER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3ASTNode2Constants
-
RegularExpression Id.
- EXPNUMBER - Static variable in interface org.sbml.jsbml.math.parser.FormulaParserLL3Constants
-
RegularExpression Id.
- EXPNUMBER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserASTNode2Constants
-
RegularExpression Id.
- EXPNUMBER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserConstants
-
RegularExpression Id.
- EXPNUMBER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3ASTNode2Constants
-
RegularExpression Id.
- EXPNUMBER - Static variable in interface org.sbml.jsbml.text.parser.FormulaParserLL3Constants
-
RegularExpression Id.
- exponent - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- ExtendedSBaseValidator - Class in org.sbml.jsbml.ext.arrays.validator
-
This validates a given
SBase
object in the context of a given model and makes sure that
the
SBase
object is in accordance with the arrays package specification.
- ExtendedSBaseValidator() - Constructor for class org.sbml.jsbml.ext.arrays.validator.ExtendedSBaseValidator
-
- extension - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- EXTENT - Static variable in class org.sbml.jsbml.UnitDefinition
-
- extentConversionFactor - Static variable in class org.sbml.jsbml.ext.comp.CompConstants
-
- extentUnits - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent
-
- ExternalModelDefinition - Class in org.sbml.jsbml.ext.comp
-
The
ExternalModelDefinition
objects are model definitions - in and of
themselves, they are definitions of the models but not uses of those models.
- ExternalModelDefinition() - Constructor for class org.sbml.jsbml.ext.comp.ExternalModelDefinition
-
Creates an ExternalModelDefinition instance
- ExternalModelDefinition(String) - Constructor for class org.sbml.jsbml.ext.comp.ExternalModelDefinition
-
Creates a ExternalModelDefinition instance with an id.
- ExternalModelDefinition(String, int, int) - Constructor for class org.sbml.jsbml.ext.comp.ExternalModelDefinition
-
Creates a ExternalModelDefinition instance with an id, level, and version.
- ExternalModelDefinition(String, String, int, int) - Constructor for class org.sbml.jsbml.ext.comp.ExternalModelDefinition
-
Creates a ExternalModelDefinition instance with an id, name, level, and version.
- ExternalModelDefinition(ExternalModelDefinition) - Constructor for class org.sbml.jsbml.ext.comp.ExternalModelDefinition
-
Clone constructor
- extractPackageVersion(String) - Static method in class org.sbml.jsbml.xml.parsers.PackageUtil
-