A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

U

uMinus(ASTNode) - Static method in class org.sbml.jsbml.ASTNode

Creates a new ASTNode that has exactly one child and which is of type minus, i.e., this negates what is encoded in ast.

uMinus(MathContainer, CallableSBase) - Static method in class org.sbml.jsbml.ASTNode

Creates a new ASTNode that has exactly one child and which is of type minus, i.e., this negates what is encoded in ast.

uMinus(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler

uMinus(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler

uMinus(ASTNode) - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler

uMinus(ASTNode2) - Static method in class org.sbml.jsbml.math.ASTFactory

Creates a new ASTMinusNode that has exactly one child and which is of type ASTNode.Type.MINUS, i.e., this negates what is encoded in ast.

uMinus(ASTNode2) - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler

Unary minus, i.e., negation of the given ASTNode2.

uMinus(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler

uMinus(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler

uMinus(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler

uMinus(ASTNode2) - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler

uMinus(ASTNode) - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Unary minus, i.e., negation of the given ASTNode.

uMinus(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler

uMinus(ASTNode) - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler

uMinus(ASTNode) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler

uMinus(ASTNode) - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler

Deprecated.

uMinus(ASTNode) - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler

UNCERT_ML_URI_L3 - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants

uncertainty - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants

Uncertainty - Class in org.sbml.jsbml.ext.distrib

Uncertainty() - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Creates an Uncertainty instance

Uncertainty(String) - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Creates a Uncertainty instance with an id.

Uncertainty(int, int) - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Creates a Uncertainty instance with a level and version.

Uncertainty(String, int, int) - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Creates a Uncertainty instance with an id, level, and version.

Uncertainty(String, String, int, int) - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Creates a Uncertainty instance with an id, name, level, and version.

Uncertainty(Uncertainty) - Constructor for class org.sbml.jsbml.ext.distrib.Uncertainty

Clone constructor

uncertML - Static variable in class org.sbml.jsbml.ext.distrib.DistribConstants

UncertMLXMLNodeReader - Class in org.sbml.jsbml.xml.parsers

A XMLNodeReader can be used to store any XML into an XMLNode.

UncertMLXMLNodeReader() - Constructor for class org.sbml.jsbml.xml.parsers.UncertMLXMLNodeReader

UNDEFINED_LEVEL_VERSION_COMBINATION_MSG - Static variable in exception org.sbml.jsbml.LevelVersionError

Message to indicate that an invalid combination of the level and version attribute has been set.

UNDEFINED_MODEL_MSG - Static variable in class org.sbml.jsbml.JSBML

This indicates that the Model has not been set properly or that an element tries to access its containing model but this is not possible.

UNDEFINED_PARSE_ERROR_MSG - Static variable in class org.sbml.jsbml.JSBML

This message indicates that a problem occurred but the current class cannot give any more precise information about the reasons.

UNDEFINED_PARSING_ERROR_MSG - Static variable in class org.sbml.jsbml.JSBML

This message indicates that a problem occurred but the current class cannot give any more precise information about the reasons.

underscore - Static variable in class org.sbml.jsbml.util.StringTools

The Character '_' as a String.

UNEXPECTED_ATTRIBUTE - Static variable in class org.sbml.jsbml.JSBML

UniqueNamedSBase - Interface in org.sbml.jsbml

This interface is used to tag all those elements whose identifier must be unique within an SBML Model.

unit - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants

Unit - Class in org.sbml.jsbml

Represents the unit XML element of a SBML file.

Unit() - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance.

Unit(double, int, Unit.Kind, double, int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a multiplier, scale, kind and exponent.

Unit(int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a level and version.

Unit(int, Unit.Kind, double, int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a scale, kind, exponent, level and version.

Unit(int, Unit.Kind, int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a scale, kind, level and version.

Unit(Unit.Kind, double, int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a kind, exponent, level and version.

Unit(Unit.Kind, int, int) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a kind, level and version.

Unit(String, int, int) - Constructor for class org.sbml.jsbml.Unit

Unit(Unit) - Constructor for class org.sbml.jsbml.Unit

Creates a Unit instance from a given Unit.

Unit.Kind - Enum in org.sbml.jsbml

This enumeration contains an exhaustive list of all available unit kinds within all Levels and Versions of SBML.

UnitDefinition - Class in org.sbml.jsbml

Represents the unitDefinition XML element of a SBML file.

UnitDefinition() - Constructor for class org.sbml.jsbml.UnitDefinition

Creates an UnitDefinition instance.

UnitDefinition(int, int) - Constructor for class org.sbml.jsbml.UnitDefinition

UnitDefinition(String) - Constructor for class org.sbml.jsbml.UnitDefinition

UnitDefinition(String, int, int) - Constructor for class org.sbml.jsbml.UnitDefinition

Creates an UnitDefinition instance from an id, level and version.

UnitDefinition(String, String, int, int) - Constructor for class org.sbml.jsbml.UnitDefinition

Creates an UnitDefinition instance from an id, level and version.

UnitDefinition(UnitDefinition) - Constructor for class org.sbml.jsbml.UnitDefinition

Creates an UnitDefinition instance from a given UnitDefinition.

UnitException - Exception in org.sbml.jsbml.math.compiler

Exception to be thrown if inconsistent units are used in mathematical expressions, i.e., instances of ASTNode2.

UnitException() - Constructor for exception org.sbml.jsbml.math.compiler.UnitException

UnitException(String) - Constructor for exception org.sbml.jsbml.math.compiler.UnitException

UnitException(Throwable) - Constructor for exception org.sbml.jsbml.math.compiler.UnitException

UnitException(String, Throwable) - Constructor for exception org.sbml.jsbml.math.compiler.UnitException

UnitException - Exception in org.sbml.jsbml.util.compilers

Exception to be thrown if inconsistent units are used in mathematical expressions, i.e., instances of ASTNode.

UnitException() - Constructor for exception org.sbml.jsbml.util.compilers.UnitException

UnitException(String) - Constructor for exception org.sbml.jsbml.util.compilers.UnitException

UnitException(Throwable) - Constructor for exception org.sbml.jsbml.util.compilers.UnitException

UnitException(String, Throwable) - Constructor for exception org.sbml.jsbml.util.compilers.UnitException

unitRef - Static variable in class org.sbml.jsbml.ext.comp.CompConstants

units - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent

UnitsCompiler - Class in org.sbml.jsbml.math.compiler

Derives the units from mathematical operations.

UnitsCompiler() - Constructor for class org.sbml.jsbml.math.compiler.UnitsCompiler

UnitsCompiler(int, int) - Constructor for class org.sbml.jsbml.math.compiler.UnitsCompiler

UnitsCompiler(Model) - Constructor for class org.sbml.jsbml.math.compiler.UnitsCompiler

UnitsCompiler - Class in org.sbml.jsbml.util.compilers

Derives the units from mathematical operations.

UnitsCompiler() - Constructor for class org.sbml.jsbml.util.compilers.UnitsCompiler

UnitsCompiler(int, int) - Constructor for class org.sbml.jsbml.util.compilers.UnitsCompiler

UnitsCompiler(Model) - Constructor for class org.sbml.jsbml.util.compilers.UnitsCompiler

unitSize - Static variable in class org.sbml.jsbml.ext.spatial.SpatialConstants

UNKNOWN_ATTRIBUTES - Static variable in class org.sbml.jsbml.AbstractTreeNode

UNKNOWN_ELEMENTS - Static variable in class org.sbml.jsbml.AbstractTreeNode

UNKNOWN_XML_NODE - Static variable in class org.sbml.jsbml.SBMLReader

String used when reading an SBML file, to store XMLNode as user object when the XMLNode does not represents something known from the 'core'.

unknownValue() - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler

unknownValue() - Method in class org.sbml.jsbml.ext.arrays.compiler.StaticallyComputableCompiler

unknownValue() - Method in class org.sbml.jsbml.ext.arrays.compiler.VectorCompiler

unknownValue() - Method in interface org.sbml.jsbml.math.compiler.ASTNode2Compiler

Dealing with a malformed ASTNode2.

unknownValue() - Method in class org.sbml.jsbml.math.compiler.FindUnitsCompiler

unknownValue() - Method in class org.sbml.jsbml.math.compiler.FormulaCompiler

unknownValue() - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler

unknownValue() - Method in class org.sbml.jsbml.math.compiler.UnitsCompiler

unknownValue() - Method in interface org.sbml.jsbml.util.compilers.ASTNodeCompiler

Dealing with a malformed ASTNode.

unknownValue() - Method in class org.sbml.jsbml.util.compilers.FindUnitsCompiler

unknownValue() - Method in class org.sbml.jsbml.util.compilers.FormulaCompiler

unknownValue() - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler

unknownValue() - Method in class org.sbml.jsbml.util.compilers.MathMLCompiler

Deprecated.

unknownValue() - Method in class org.sbml.jsbml.util.compilers.UnitsCompiler

unmarshal(HierarchicalStreamReader, UnmarshallingContext) - Method in class org.sbml.jsbml.xml.xstream.converter.MessageConverter

unmarshal(HierarchicalStreamReader, UnmarshallingContext) - Method in class org.sbml.jsbml.xml.xstream.converter.SBMLErrorConverter

unregister(SBase) - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin

unregister(SBase) - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin

unregister(SBase) - Method in class org.sbml.jsbml.ext.distrib.DrawFromDistribution

unregister(SBase) - Method in class org.sbml.jsbml.ext.spatial.SpatialModelPlugin

unregister(SBase) - Method in class org.sbml.jsbml.KineticLaw

unregister(SBase) - Method in class org.sbml.jsbml.Model

unregister(SBase) - Method in interface org.sbml.jsbml.util.IdManager

Unregisters the given SBase element and all of it's children in this IdManager.

unregisterChild(SBase) - Method in class org.sbml.jsbml.AbstractSBase

unregisterChild(SBase) - Method in interface org.sbml.jsbml.SBase

Unregisters recursively the given SBase from the Model and SBMLDocument.

unsetAbsoluteCx() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable absoluteCx

unsetAbsoluteCx() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable absoluteCx

unsetAbsoluteCy() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable absoluteCy

unsetAbsoluteCy() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable absoluteCy

unsetAbsoluteCz() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable absoluteCz

unsetAbsoluteCz() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable absoluteCz

unsetAbsoluteFx() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable absoluteFx

unsetAbsoluteFy() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable absoluteFy

unsetAbsoluteFz() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable absoluteFz

unsetAbsoluteHeight() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable absoluteHeight

unsetAbsoluteHeight() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable absoluteHeight

unsetAbsoluteR() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable absoluteR

unsetAbsoluteRx() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable absoluteRx

unsetAbsoluteRx() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable absoluteRx

unsetAbsoluteRy() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable absoluteRy

unsetAbsoluteRy() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable absoluteRy

unsetAbsoluteWidth() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable absoluteWidth

unsetAbsoluteWidth() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable absoluteWidth

unsetAbsoluteX() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable absoluteX

unsetAbsoluteX() - Method in interface org.sbml.jsbml.ext.render.Point3D

Unsets the variable absoluteX

unsetAbsoluteX() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable absoluteX

unsetAbsoluteX() - Method in class org.sbml.jsbml.ext.render.RenderPoint

unsetAbsoluteX() - Method in class org.sbml.jsbml.ext.render.Text

unsetAbsoluteX1() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable absoluteX1

unsetAbsoluteX2() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable absoluteX2

unsetAbsoluteY() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable absoluteY

unsetAbsoluteY() - Method in interface org.sbml.jsbml.ext.render.Point3D

Unsets the variable absoluteY

unsetAbsoluteY() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable absoluteY

unsetAbsoluteY() - Method in class org.sbml.jsbml.ext.render.RenderPoint

unsetAbsoluteY() - Method in class org.sbml.jsbml.ext.render.Text

unsetAbsoluteY1() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable absoluteY1

unsetAbsoluteY2() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable absoluteY2

unsetAbsoluteZ() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable absoluteZ

unsetAbsoluteZ() - Method in interface org.sbml.jsbml.ext.render.Point3D

Unsets the variable absoluteZ

unsetAbsoluteZ() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable absoluteZ

unsetAbsoluteZ() - Method in class org.sbml.jsbml.ext.render.RenderPoint

unsetAbsoluteZ() - Method in class org.sbml.jsbml.ext.render.Text

unsetAbsoluteZ1() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable absoluteZ1

unsetAbsoluteZ2() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable absoluteZ2

unsetActiveObjective() - Method in class org.sbml.jsbml.ext.fbc.ListOfObjectives

Unsets the variable activeObjective

unsetAnnotation() - Method in class org.sbml.jsbml.AbstractSBase

unsetAnnotation() - Method in interface org.sbml.jsbml.SBase

Unsets the value of the 'annotation' sub-element of this SBML object.

unsetApplyToAll() - Method in class org.sbml.jsbml.ext.dyn.DynEventPlugin

Unsets the applyToAll field

unsetAreaUnits() - Method in class org.sbml.jsbml.Model

Sets the Model.areaUnitsID of this Model to null.

unsetArrayData() - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints

Unsets the variable arrayData.

unsetArrayDataLength() - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints

Unsets the variable arrayDataLength.

unsetArrayDimension() - Method in class org.sbml.jsbml.ext.arrays.Dimension

Unsets the variable arrayDimension

unsetArrayDimension() - Method in class org.sbml.jsbml.ext.arrays.Index

Unsets the variable arrayDimension

unsetAssociatedSpecies() - Method in class org.sbml.jsbml.ext.fbc.GeneProduct

Unsets the variable associatedSpecies.

unsetAssociation() - Method in class org.sbml.jsbml.ext.fbc.GeneProductAssociation

Unsets the variable association.

unsetBackgroundColor() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

Unsets the variable backgroundColor

unsetBindingSite1() - Method in class org.sbml.jsbml.ext.multi.InSpeciesTypeBond

Unsets the variable bindingSite1.

unsetBindingSite2() - Method in class org.sbml.jsbml.ext.multi.InSpeciesTypeBond

Unsets the variable bindingSite2.

unsetBindingStatus() - Method in class org.sbml.jsbml.ext.multi.OutwardBindingSite

Unsets the variable bindingStatus.

unsetBiologicalQualifierType() - Method in class org.sbml.jsbml.CVTerm

Unsets the biological qualifier if it is set and of the type CVTerm.Type.BIOLOGICAL_QUALIFIER

unsetBoundaryDomainType() - Method in class org.sbml.jsbml.ext.spatial.BoundaryCondition

Unsets the variable boundaryDomainType

unsetBoundaryMaximum() - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent

Unsets the variable boundaryMaximum

unsetBoundaryMinimum() - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent

Unsets the variable boundaryMinimum

unsetBoundingBox() - Method in class org.sbml.jsbml.ext.layout.GraphicalObject

unsetBoundingBox() - Method in class org.sbml.jsbml.ext.render.LineEnding

Unsets the variable boundingBox

unsetCBOTerm() - Method in class org.sbml.jsbml.ext.dyn.DynSBasePlugin

Unsets the cboTerm field

unsetChangedBy() - Method in class org.sbml.jsbml.ext.req.ChangedMath

Unsets the variable changedBy

unsetCharge() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin

Unsets the variable charge

unsetCharge() - Method in class org.sbml.jsbml.Species

Deprecated.

unsetChemicalFormula() - Method in class org.sbml.jsbml.ext.fbc.FBCSpeciesPlugin

Unsets the variable chemicalFormula

unsetCoefficient() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective

Unsets the variable coefficient

unsetCompartment() - Method in interface org.sbml.jsbml.CompartmentalizedSBase

Remove the reference to a compartment, i.e., unset the value of the variable 'compartment'.

unsetCompartment() - Method in class org.sbml.jsbml.ext.layout.CompartmentGlyph

unsetCompartment() - Method in class org.sbml.jsbml.ext.multi.CompartmentReference

unsetCompartment() - Method in class org.sbml.jsbml.ext.multi.SpeciesType

unsetCompartment() - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies

unsetCompartment() - Method in class org.sbml.jsbml.Reaction

unsetCompartment() - Method in class org.sbml.jsbml.Species

unsetCompartmentMapping() - Method in class org.sbml.jsbml.ext.spatial.SpatialCompartmentPlugin

Unsets the variable compartmentMapping

unsetCompartmentReference() - Method in class org.sbml.jsbml.ext.multi.MultiSimpleSpeciesReferencePlugin

Unsets the variable compartmentReference.

unsetCompartmentReference() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeInstance

Unsets the variable compartmentReference.

unsetCompartmentType() - Method in class org.sbml.jsbml.Compartment

Sets the compartmentTypeID of this Compartment to null.

unsetCompartmentType() - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin

Unsets the variable compartmentType.

unsetComplementA() - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator

Unsets the variable complementA

unsetComplementB() - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator

Unsets the variable complementB

unsetComponent() - Method in class org.sbml.jsbml.ext.multi.OutwardBindingSite

Unsets the variable component.

unsetComponent() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature

Unsets the variable component.

unsetComponent() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentIndex

Unsets the variable component.

unsetComponents() - Method in class org.sbml.jsbml.ext.spatial.TransformationComponent

Unsets the variable components

unsetCompression() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable compression.

unsetCompression() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable compression

unsetCompression() - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints

Unsets the variable compression.

unsetConstant() - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies

unsetConstant() - Method in class org.sbml.jsbml.SpeciesReference

unsetConstant() - Method in class org.sbml.jsbml.Symbol

unsetConstant() - Method in interface org.sbml.jsbml.Variable

With this method the constant property of this variable will be set to an undefined state.

unsetConversionFactor() - Method in class org.sbml.jsbml.ext.comp.ReplacedElement

Unsets the variable conversionFactor

unsetConversionFactor() - Method in class org.sbml.jsbml.Model

Sets the Model.conversionFactorID of this Model to null.

unsetConversionFactor() - Method in class org.sbml.jsbml.Species

Unsets the conversionFactorID of this Species.

unsetCoord1() - Method in class org.sbml.jsbml.ext.spatial.InteriorPoint

Unsets the variable coord1

unsetCoord2() - Method in class org.sbml.jsbml.ext.spatial.InteriorPoint

Unsets the variable coord2

unsetCoord3() - Method in class org.sbml.jsbml.ext.spatial.InteriorPoint

Unsets the variable coord3

unsetCoordinate() - Method in class org.sbml.jsbml.ext.spatial.AdvectionCoefficient

Unsets the variable coordinate

unsetCoordinateBoundary() - Method in class org.sbml.jsbml.ext.spatial.BoundaryCondition

Unsets the variable coordinateBoundary

unsetCoordinateReference1() - Method in class org.sbml.jsbml.ext.spatial.DiffusionCoefficient

Unsets the variable coordinateReference1

unsetCoordinateReference2() - Method in class org.sbml.jsbml.ext.spatial.DiffusionCoefficient

Unsets the variable coordinateReference2

unsetCoordinateSystem() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Unsets the variable coordinateSystem

unsetCreatedDate() - Method in class org.sbml.jsbml.History

Sets the created of this History to null.

unsetCSGNode() - Method in class org.sbml.jsbml.ext.spatial.CSGObject

Unsets the variable csgNode

unsetCSGNode() - Method in class org.sbml.jsbml.ext.spatial.CSGTransformation

Unsets the variable csgNode

unsetCsgObjectRef() - Method in class org.sbml.jsbml.ext.spatial.CSGPseudoPrimitive

Unsets the variable csgObjectRef

unsetCurve() - Method in class org.sbml.jsbml.ext.layout.ReferenceGlyph

unsetCurve() - Method in class org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph

unsetCVTerms() - Method in class org.sbml.jsbml.AbstractSBase

unsetCVTerms() - Method in class org.sbml.jsbml.Annotation

Clears the List of CVTerms.

unsetCVTerms() - Method in interface org.sbml.jsbml.SBase

Unsets the list of CVTerm of this object.

unsetCVTerms - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent

unsetCx() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable cx

unsetCx() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable cx

unsetCy() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable cy

unsetCy() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable cy

unsetCz() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable cz

unsetCz() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable cz

unsetData() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable data

unsetDataType() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable dataType.

unsetDataType() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable dataType

unsetDataType() - Method in class org.sbml.jsbml.ext.spatial.SpatialPoints

Unsets the variable dataType.

unsetDelay() - Method in class org.sbml.jsbml.Event

Sets the delay of this Event to null.

unsetDeletion() - Method in class org.sbml.jsbml.ext.comp.ReplacedElement

Unsets the variable deletion

unsetDiffusionKind() - Method in class org.sbml.jsbml.ext.spatial.DiffusionCoefficient

Unsets the variable diffusionKind

unsetDistinctAttribute() - Method in class org.sbml.jsbml.ext.groups.MemberConstraint

Deprecated.

Unsets the variable distinctAttribute

unsetDomain() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable domain

unsetDomain1() - Method in class org.sbml.jsbml.ext.spatial.AdjacentDomains

Unsets the variable domain1

unsetDomain2() - Method in class org.sbml.jsbml.ext.spatial.AdjacentDomains

Unsets the variable domain2

unsetDomainType() - Method in class org.sbml.jsbml.ext.spatial.AnalyticVolume

Unsets the variable domainType

unsetDomainType() - Method in class org.sbml.jsbml.ext.spatial.CompartmentMapping

Unsets the variable domainType

unsetDomainType() - Method in class org.sbml.jsbml.ext.spatial.CSGObject

Unsets the variable domainType

unsetDomainType() - Method in class org.sbml.jsbml.ext.spatial.Domain

Unsets the variable domainType

unsetDomainType() - Method in class org.sbml.jsbml.ext.spatial.SampledVolume

Unsets the variable domainType

unsetDrawFromDistribution() - Method in class org.sbml.jsbml.ext.distrib.DistribFunctionDefinitionPlugin

Unsets the variable drawFromDistribution

unsetEmail() - Method in class org.sbml.jsbml.Creator

Unsets the email of this Creator.

unsetEnableRotationMapping() - Method in class org.sbml.jsbml.ext.render.LineEnding

Unsets the variable LineEnding.enableRotationMapping

unsetEnd() - Method in class org.sbml.jsbml.xml.XMLToken

Declares this XML start/end element is no longer an end element.

unsetEndHead() - Method in class org.sbml.jsbml.ext.render.RenderCurve

Unsets the variable endHead

unsetEndHead() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable endHead

unsetExponent() - Method in class org.sbml.jsbml.Unit

unsetExtension(String) - Method in class org.sbml.jsbml.AbstractSBase

unsetExtension(String) - Method in interface org.sbml.jsbml.SBase

Unsets the SBasePlugin extension object which matches this package name or URI.

unsetExtentConversionFactor() - Method in class org.sbml.jsbml.ext.comp.Submodel

Unsets the variable extentConversionFactor

unsetExtentUnits() - Method in class org.sbml.jsbml.Model

Sets the Model.extentUnitsID of this Model to null.

unsetFamilyName() - Method in class org.sbml.jsbml.Creator

Unsets the familyName of this Creator.

unsetFast() - Method in class org.sbml.jsbml.Reaction

Sets the fast Boolean of this Reaction to null.

unsetField() - Method in class org.sbml.jsbml.ext.dyn.SpatialComponent

Unsets the variable field

unsetFill() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive2D

Unsets the variable fill

unsetFillRule() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive2D

Unsets the variable fillRule

unsetFontFamily() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable fontFamily

unsetFontFamily() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable fontFamily

unsetFontFamily() - Method in class org.sbml.jsbml.ext.render.Text

unsetFontSize() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable fontSize

unsetFontSize() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable fontSize

unsetFontSize() - Method in class org.sbml.jsbml.ext.render.Text

unsetFontStyleItalic() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable fontStyleItalic

unsetFontStyleItalic() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable fontStyleItalic

unsetFontStyleItalic() - Method in class org.sbml.jsbml.ext.render.Text

unsetFontWeightBold() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable fontWeightBold

unsetFontWeightBold() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable fontWeightBold

unsetFontWeightBold() - Method in class org.sbml.jsbml.ext.render.Text

unsetFormula() - Method in class org.sbml.jsbml.AbstractMathContainer

Deprecated.

unsetFormula() - Method in interface org.sbml.jsbml.MathContainer

Deprecated.

use MathContainer.unsetMath()

unsetForwardTransformation() - Method in class org.sbml.jsbml.ext.spatial.CSGHomogeneousTransformation

Unsets the variable forwardTransformation

unsetFunctionType() - Method in class org.sbml.jsbml.ext.spatial.AnalyticVolume

Unsets the variable functionType

unsetFx() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable fx

unsetFy() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable fy

unsetFz() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable fz

unsetGeneProduct() - Method in class org.sbml.jsbml.ext.fbc.GeneProductRef

Unsets the variable geneProduct

unsetGeneProductAssociation() - Method in class org.sbml.jsbml.ext.fbc.FBCReactionPlugin

Unsets the variable FBCReactionPlugin.geneProductAssociation.

unsetGeometry() - Method in class org.sbml.jsbml.ext.spatial.SpatialModelPlugin

Unsets the variable geometry

unsetGeometryDefinition() - Method in class org.sbml.jsbml.ext.spatial.OrdinalMapping

Unsets the variable geometryDefinition

unsetGivenName() - Method in class org.sbml.jsbml.Creator

Unsets the givenName of this Creator.

unsetGraphicalObject() - Method in class org.sbml.jsbml.ext.layout.TextGlyph

unsetGroup() - Method in class org.sbml.jsbml.ext.render.LineEnding

Unsets the variable group

unsetGroup() - Method in class org.sbml.jsbml.ext.render.Style

Unsets the variable group

unsetHeight() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable height

unsetHeight() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable height

unsetHistory() - Method in class org.sbml.jsbml.AbstractSBase

unsetHistory() - Method in class org.sbml.jsbml.Annotation

Sets the History instance of this object to null.

unsetHistory() - Method in interface org.sbml.jsbml.SBase

Unsets the History of this object.

unsetHref() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable href

unsetId() - Method in class org.sbml.jsbml.AbstractNamedSBase

unsetId() - Method in class org.sbml.jsbml.ext.comp.AbstractNamedSBaseRef

unsetId() - Method in class org.sbml.jsbml.ext.groups.ListOfMemberConstraint

Deprecated.

unsetId() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable id

unsetId() - Method in class org.sbml.jsbml.FunctionDefinition

unsetId() - Method in interface org.sbml.jsbml.NamedSBase

sets the id value to null.

unsetIdenticalAttribute() - Method in class org.sbml.jsbml.ext.groups.MemberConstraint

Deprecated.

Unsets the variable identicalAttribute

unsetIDList() - Method in class org.sbml.jsbml.ext.render.LocalStyle

Unsets the variable idList

unsetIdRef() - Method in class org.sbml.jsbml.ext.comp.SBaseRef

Unsets the variable idRef

unsetIdRef() - Method in class org.sbml.jsbml.ext.dyn.DynElement

Unsets the variable idRef

unsetIdRef() - Method in class org.sbml.jsbml.ext.groups.Member

Unsets the variable idRef

unsetidToValue() - Method in class org.sbml.jsbml.ext.arrays.compiler.ArraysCompiler

Returns true, if idToValue contain at least one element, otherwise false.

unsetIndentifyingParent() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentIndex

Unsets the variable identifyingParent.

unsetIndex() - Method in class org.sbml.jsbml.ext.distrib.DistribInput

Unsets the variable index

unsetInitialAmount() - Method in class org.sbml.jsbml.Species

Unsets the initialAmount of this Species.

unsetInitialConcentration() - Method in class org.sbml.jsbml.Species

Unsets the initialConcentration of this Species.

unsetInitialLevel() - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies

unsetInterpolation() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable interpolation

unsetIsActive() - Method in class org.sbml.jsbml.ext.spatial.GeometryDefinition

Unsets the variable isActive

unsetIsLocal() - Method in class org.sbml.jsbml.ext.spatial.SpatialReactionPlugin

Unsets the variable isLocal

unsetIsType() - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin

Unsets the variable isType.

unsetKind() - Method in class org.sbml.jsbml.Unit

unsetKineticLaw() - Method in class org.sbml.jsbml.Reaction

Sets the KineticLaw of this Reaction to null and notifies all TreeNodeChangeListener about changes.

unsetLabel() - Method in class org.sbml.jsbml.ext.fbc.GeneProduct

Unsets the variable GeneProduct.label

unsetLengthUnits() - Method in class org.sbml.jsbml.Model

Sets the Model.lengthUnitsID of this Model to null.

unsetListOfAdditionalGraphicalObjects() - Method in class org.sbml.jsbml.ext.layout.Layout

Removes the Layout.listOfAdditionalGraphicalObjects from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfAdjacentDomains() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfAdjacentDomains contain at least one element, otherwise false

unsetListOfAnalyticVolumes() - Method in class org.sbml.jsbml.ext.spatial.AnalyticGeometry

Returns true, if listOfAnalyticVolumes contain at least one element, otherwise false

unsetListOfChangedMaths() - Method in class org.sbml.jsbml.ext.req.ReqSBasePlugin

Removes all of the elements from this list of ChangedMaths.

unsetListOfColorDefinitions() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

unsetListOfCompartmentGlyphs() - Method in class org.sbml.jsbml.ext.layout.Layout

Removes the Layout.listOfCompartmentGlyphs from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfCompartmentReferences() - Method in class org.sbml.jsbml.ext.multi.MultiCompartmentPlugin

Returns true if MultiCompartmentPlugin.listOfCompartmentReferences contains at least one element, otherwise false.

unsetListOfCompartments() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfCompartments from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfCompartmentTypes() - Method in class org.sbml.jsbml.Model

Deprecated.

Only valid in SBML Level 2 for Versions 2 through 4.

unsetListOfConstraints() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfConstraints from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfCoordinateComponents() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfCoordinateComponents contain at least one element, otherwise false

unsetListOfCSGNodes() - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator

Returns true, if listOfCSGNodes contain at least one element, otherwise false

unsetListOfCSGObjects() - Method in class org.sbml.jsbml.ext.spatial.CSGeometry

Returns true, if listOfCSGObjects contain at least one element, otherwise false

unsetListOfCurveSegments() - Method in class org.sbml.jsbml.ext.layout.Curve

Removes the Curve.listOfCurveSegments from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfDeletions() - Method in class org.sbml.jsbml.ext.comp.Submodel

Returns true, if listOfDeletions contain at least one element, otherwise false

unsetListOfDimensions() - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin

Returns true, if listOfDimensions contain at least one element, otherwise false.

unsetListOfDistribInputs() - Method in class org.sbml.jsbml.ext.distrib.DrawFromDistribution

Returns true, if listOfDistribInputs contain at least one element, otherwise false.

unsetListOfDomains() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfDomains contain at least one element, otherwise false

unsetListOfDomainTypes() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfDomainTypes contain at least one element, otherwise false

unsetListOfDynElements() - Method in class org.sbml.jsbml.ext.dyn.DynEventPlugin

Unsets the variable listOfDynElements

unsetListOfElements() - Method in class org.sbml.jsbml.ext.render.Polygon

Unsets the variable listOfElements

unsetListOfElements() - Method in class org.sbml.jsbml.ext.render.RenderCurve

unsetListOfElements() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Returns true, if listOfElements contain at least one element, otherwise false.

unsetListOfEventAssignments() - Method in class org.sbml.jsbml.Event

Removes the Event.listOfEventAssignments from this Event and notifies all registered instances of TreeNodeChangeListener.

unsetListOfEvents() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfEvents from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfExternalModelDefinitions() - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin

Returns true, if listOfExternalModelDefinitions contain at least one element, otherwise false

unsetListOfFluxBounds() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin

Deprecated.

Only defined in FBC version 1.

unsetListOfFluxObjectives() - Method in class org.sbml.jsbml.ext.fbc.Objective

Unsets the listOfFluxObjectives.

unsetListOfFunctionDefinitions() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfFunctionDefinitions from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfFunctionTerms() - Method in class org.sbml.jsbml.ext.qual.Transition

unsetListOfGeneProducts() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin

Returns true if FBCModelPlugin.listOfGeneProducts contains at least one element, otherwise false.

unsetListOfGeometryDefinitions() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfGeometryDefinitions contain at least one element, otherwise false

unsetListOfGeometryDefinitions() - Method in class org.sbml.jsbml.ext.spatial.MixedGeometry

Returns true, if listOfGeometryDefinitions contain at least one element, otherwise false

unsetListOfGlobalRenderInformation() - Method in class org.sbml.jsbml.ext.render.RenderListOfLayoutsPlugin

unsetListOfGradientDefinitions() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

unsetListOfGradientStops() - Method in class org.sbml.jsbml.ext.render.GradientBase

unsetListOfGroups() - Method in class org.sbml.jsbml.ext.groups.GroupsModelPlugin

Removes the GroupsModelPlugin.listOfGroups from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfIndices() - Method in class org.sbml.jsbml.ext.arrays.ArraysSBasePlugin

Returns true, if listOfIndices contain at least one element, otherwise false.

unsetListOfInitialAssignments() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfInitialAssignments from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfInputs() - Method in class org.sbml.jsbml.ext.qual.Transition

unsetListOfInSpeciesTypeBonds() - Method in class org.sbml.jsbml.ext.multi.SpeciesType

Returns true if SpeciesType.listOfInSpeciesTypeBonds contains at least one element, otherwise false.

unsetListOfInteriorPoints() - Method in class org.sbml.jsbml.ext.spatial.Domain

Returns true, if listOfInteriorPoints contain at least one element, otherwise false

unsetListOfLayouts() - Method in class org.sbml.jsbml.ext.layout.LayoutModelPlugin

Removes the LayoutModelPlugin.listOfLayouts from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfLineEndings() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

unsetListOfLocalParameters() - Method in class org.sbml.jsbml.KineticLaw

Removes the KineticLaw.listOfLocalParameters from this KineticLaw and notifies all registered instances of TreeNodeChangeListener.

unsetListOfLocalRenderInformation() - Method in class org.sbml.jsbml.ext.render.RenderLayoutPlugin

unsetListOfLocalStyles() - Method in class org.sbml.jsbml.ext.render.LocalRenderInformation

unsetListOfMembers() - Method in class org.sbml.jsbml.ext.groups.Group

Returns true if Group.listOfMembers contains at least one element, otherwise false.

unsetListOfModelDefinitions() - Method in class org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin

Returns true, if listOfModelDefinitions contain at least one element, otherwise false

unsetListOfModifiedDates() - Method in class org.sbml.jsbml.History

Sets the created of this History to null.

unsetListOfModifiers() - Method in class org.sbml.jsbml.Reaction

Removes the Reaction.listOfModifiers from this Reaction and notifies all registered instances of TreeNodeChangeListener.

unsetListOfNestedCVTerms() - Method in class org.sbml.jsbml.CVTerm

Returns true if CVTerm.listOfNestedCVTerms contains at least one element, otherwise false.

unsetListOfObjectives() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin

Returns true if listOfObjectives contain at least one element, otherwise false

unsetListOfOrdinalMappings() - Method in class org.sbml.jsbml.ext.spatial.MixedGeometry

Returns true, if listOfOrdinalMappings contain at least one element, otherwise false

unsetListOfOutputs() - Method in class org.sbml.jsbml.ext.qual.Transition

unsetListOfOutwardBindingSites() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin

Returns true if MultiSpeciesPlugin.listOfOutwardBindingSites contains at least one element, otherwise false.

unsetListOfParameters() - Method in class org.sbml.jsbml.KineticLaw

Deprecated.

use KineticLaw.unsetListOfLocalParameters()

unsetListOfParameters() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfParameters from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfParametricObjects() - Method in class org.sbml.jsbml.ext.spatial.ParametricGeometry

Returns true, if listOfParametricObjects contain at least one element, otherwise false

unsetListOfPorts() - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin

Returns true, if listOfPorts contain at least one element, otherwise false

unsetListOfPossibleSpeciesFeatureValues() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureType

Returns true if SpeciesFeatureType.listOfPossibleSpeciesFeatureValues contains at least one element, otherwise false.

unsetListOfProducts() - Method in class org.sbml.jsbml.Reaction

Removes the Reaction.listOfProducts from this Reaction and notifies all registered instances of TreeNodeChangeListener.

unsetListOfQualitativeSpecies() - Method in class org.sbml.jsbml.ext.qual.QualModelPlugin

unsetListOfReactants() - Method in class org.sbml.jsbml.Reaction

Removes the Reaction.listOfReactants from this Reaction and notifies all registered instances of TreeNodeChangeListener.

unsetListOfReactionGlyphs() - Method in class org.sbml.jsbml.ext.layout.Layout

Removes the Layout.listOfReactionGlyphs from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfReactions() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfReactions from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfReplacedElements() - Method in class org.sbml.jsbml.ext.comp.CompSBasePlugin

Returns true, if listOfReplacedElements contained at least one element, otherwise false

unsetListOfRules() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfRules from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfSampledFields() - Method in class org.sbml.jsbml.ext.spatial.Geometry

Returns true, if listOfSampledFields contain at least one element, otherwise false

unsetListOfSampledVolumes() - Method in class org.sbml.jsbml.ext.spatial.SampledFieldGeometry

Returns true, if listOfSampledVolumes contain at least one element, otherwise false

unsetListOfSpatialComponents() - Method in class org.sbml.jsbml.ext.dyn.DynCompartmentPlugin

Unsets the variable listOfSpatialComponents

unsetListOfSpecies() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfSpecies from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfSpeciesFeatureChanges() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentMapInProduct

Returns true if SpeciesTypeComponentMapInProduct.listOfSpeciesFeatureChanges contains at least one element, otherwise false.

unsetListOfSpeciesFeatures() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin

Returns true if MultiSpeciesPlugin.listOfSpeciesFeatures contains at least one element, otherwise false.

unsetListOfSpeciesFeatureTypes() - Method in class org.sbml.jsbml.ext.multi.SpeciesType

Returns true if SpeciesType.listOfSpeciesFeatureTypes contains at least one element, otherwise false.

unsetListOfSpeciesFeatureValues() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature

Returns true if SpeciesFeature.listOfSpeciesFeatureValues contains at least one element, otherwise false.

unsetListOfSpeciesGlyphs() - Method in class org.sbml.jsbml.ext.layout.Layout

Removes the Layout.listOfSpeciesGlyphs from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfSpeciesReferencesGlyph() - Method in class org.sbml.jsbml.ext.layout.ReactionGlyph

unsetListOfSpeciesTypeComponentIndexes() - Method in class org.sbml.jsbml.ext.multi.SpeciesType

Returns true if SpeciesType.listOfSpeciesTypeComponentIndexes contains at least one element, otherwise false.

unsetListOfSpeciesTypeComponentMapInProducts() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesReferencePlugin

Returns true if MultiSpeciesReferencePlugin.listOfSpeciesTypeComponentMapInProducts contains at least one element, otherwise false.

unsetListOfSpeciesTypeInstances() - Method in class org.sbml.jsbml.ext.multi.SpeciesType

Returns true if SpeciesType.listOfSpeciesTypeInstances contains at least one element, otherwise false.

unsetListOfSpeciesTypes() - Method in class org.sbml.jsbml.ext.multi.MultiModelPlugin

Sets the listOfSpeciesTypes to null

unsetListOfSpeciesTypes() - Method in class org.sbml.jsbml.Model

Deprecated.

Only valid in SBML Level 2 for Versions 2 through 4.

unsetListOfStyles() - Method in class org.sbml.jsbml.ext.render.GlobalRenderInformation

unsetListOfSubGlyphs() - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph

Returns true, if listOfSubGlyphs contain at least one element, otherwise false

unsetListOfSubmodels() - Method in class org.sbml.jsbml.ext.comp.CompModelPlugin

Returns true, if listOfSubmodels contain at least one element, otherwise false

unsetListOfTextGlyphs() - Method in class org.sbml.jsbml.ext.layout.Layout

Removes the Layout.listOfTextGlyphs from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfTransitions() - Method in class org.sbml.jsbml.ext.qual.QualModelPlugin

unsetListOfUnitDefinitions() - Method in class org.sbml.jsbml.Model

Removes the Model.listOfUnitDefinitions from this Model and notifies all registered instances of TreeNodeChangeListener.

unsetListOfUnits() - Method in class org.sbml.jsbml.UnitDefinition

Removes the UnitDefinition.listOfUnits from this UnitDefinition and notifies all registered instances of TreeNodeChangeListener.

unsetLowerFluxBound() - Method in class org.sbml.jsbml.ext.fbc.FBCReactionPlugin

Unsets the variable lowerFluxBound.

unsetMath() - Method in class org.sbml.jsbml.AbstractMathContainer

unsetMath() - Method in interface org.sbml.jsbml.MathContainer

Sets the current ASTNode math element of this MathContainer to null and notifies all TreeNodeChangeListeners assigned to this object about this change.

unsetMaxLevel() - Method in class org.sbml.jsbml.ext.qual.QualitativeSpecies

unsetMaxValue() - Method in class org.sbml.jsbml.ext.spatial.SampledVolume

Unsets the variable maxValue

unsetMd5() - Method in class org.sbml.jsbml.ext.comp.ExternalModelDefinition

Unsets the variable md5

unsetMembersShareType() - Method in class org.sbml.jsbml.ext.groups.ListOfMemberConstraint

Deprecated.

Unsets the variable membersShareType

unsetMessage() - Method in class org.sbml.jsbml.Constraint

Sets the message of this Constraint to null.

unsetMetaId() - Method in class org.sbml.jsbml.AbstractSBase

unsetMetaId() - Method in interface org.sbml.jsbml.SBase

Unsets the value of the 'metaid' attribute of this SBML object.

unsetMetaIdRef() - Method in class org.sbml.jsbml.ext.comp.SBaseRef

Unsets the variable metaIdRef

unsetMetaIdRef() - Method in class org.sbml.jsbml.ext.dyn.DynElement

Unsets the variable metaIdRef

unsetMetaIdRef() - Method in class org.sbml.jsbml.ext.groups.Member

Unsets the variable metaIdRef

unsetMetaidRef() - Method in class org.sbml.jsbml.ext.layout.GraphicalObject

Unsets the variable metaidRef

unsetMinValue() - Method in class org.sbml.jsbml.ext.spatial.SampledVolume

Unsets the variable minValue

unsetModel() - Method in class org.sbml.jsbml.SBMLDocument

Sets the Model of this SBMLDocument to null and notifies all TreeNodeChangeListener about changes.

unsetModelHistory() - Method in class org.sbml.jsbml.Model

Deprecated.

use AbstractSBase.unsetHistory().

unsetModelQualifierType() - Method in class org.sbml.jsbml.CVTerm

Unsets the CVTerm.Qualifier if it is set and of the type CVTerm.Type.MODEL_QUALIFIER.

unsetModelRef() - Method in class org.sbml.jsbml.ext.comp.ExternalModelDefinition

Unsets the variable modelRef

unsetModelRef() - Method in class org.sbml.jsbml.ext.comp.Submodel

Unsets the variable modelRef

unsetMultiplier() - Method in class org.sbml.jsbml.Unit

unsetName() - Method in class org.sbml.jsbml.AbstractNamedSBase

unsetName() - Method in class org.sbml.jsbml.ext.comp.AbstractNamedSBaseRef

unsetName() - Method in class org.sbml.jsbml.ext.groups.ListOfMemberConstraint

Deprecated.

unsetName() - Method in class org.sbml.jsbml.ext.render.RenderGroup

unsetName() - Method in class org.sbml.jsbml.FunctionDefinition

unsetName() - Method in interface org.sbml.jsbml.NamedSBase

sets the name value to null.

unsetNamespace() - Method in class org.sbml.jsbml.AbstractSBase

Unsets the namespace that is associated to this SBase.

unsetNonRDFannotation() - Method in class org.sbml.jsbml.Annotation

Sets the non RDF annotation String to null.

unsetNotes() - Method in class org.sbml.jsbml.AbstractSBase

unsetNotes() - Method in interface org.sbml.jsbml.SBase

Unsets the value of the 'notes' sub-element of this SBML object.

unsetNumericValue() - Method in class org.sbml.jsbml.ext.multi.PossibleSpeciesFeatureValue

Unsets the variable numericValue.

unsetNumSamples1() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable numSamples1

unsetNumSamples2() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable numSamples2

unsetNumSamples3() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable numSamples3

unsetOccur() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature

Unsets the variable occur.

unsetOccur() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureType

Unsets the variable occur.

unsetOffset() - Method in class org.sbml.jsbml.ext.render.GradientStop

Unsets the variable offset

unsetOffset() - Method in class org.sbml.jsbml.Unit

Deprecated.

the offset attribute should no longer be used.

unsetOperation() - Method in class org.sbml.jsbml.ext.fbc.FluxBound

Deprecated.

Only defined in FBC version 1.

unsetOperationType() - Method in class org.sbml.jsbml.ext.spatial.CSGSetOperator

Unsets the variable operationType

unsetOrder() - Method in class org.sbml.jsbml.ext.layout.CompartmentGlyph

Unsets the variable order

unsetOrdinal() - Method in class org.sbml.jsbml.ext.spatial.AnalyticVolume

Unsets the variable ordinal

unsetOrdinal() - Method in class org.sbml.jsbml.ext.spatial.CSGObject

Unsets the variable ordinal

unsetOrdinal() - Method in class org.sbml.jsbml.ext.spatial.OrdinalMapping

Unsets the variable ordinal

unsetOrganization() - Method in class org.sbml.jsbml.Creator

Unsets the organisation of this Creator.

unsetOutputLevel() - Method in class org.sbml.jsbml.ext.qual.Output

unsetOutside() - Method in class org.sbml.jsbml.Compartment

Deprecated.

since Level 3 Version 1

unsetParentSBMLObject() - Method in class org.sbml.jsbml.math.AbstractASTNode

unsetParentSBMLObject() - Method in interface org.sbml.jsbml.math.ASTNode2

Unsets the parentSBMLObject to null recursively.

unsetParentSBMLObject() - Method in class org.sbml.jsbml.math.ASTUnknown

unsetPlugin(String) - Method in class org.sbml.jsbml.AbstractSBase

unsetPlugin(String) - Method in interface org.sbml.jsbml.SBase

Unsets the SBasePlugin extension object which matches this package name or URI.

unsetPointIndex() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable pointIndex.

unsetPointIndex() - Method in class org.sbml.jsbml.ext.spatial.PolygonObject

Deprecated.

Unsets the variable pointIndex

unsetPointIndexLength() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable pointIndexLength.

unsetPolygonType() - Method in class org.sbml.jsbml.ext.spatial.ParametricObject

Unsets the variable polygonType

unsetPortRef() - Method in class org.sbml.jsbml.ext.comp.SBaseRef

Unsets the variable portRef

unsetPrimitiveType() - Method in class org.sbml.jsbml.ext.spatial.CSGPrimitive

Unsets the variable primitiveType

unsetPriority() - Method in class org.sbml.jsbml.Event

Sets the Priority of this Event to null and notifies TreeNodeChangeListeners.

unsetProductComponent() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentMapInProduct

Unsets the variable productComponent.

unsetProductSpeciesFeature() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureChange

Unsets the variable productSpeciesFeature.

unsetProgramName() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

Unsets the variable programmName

unsetProgramName() - Method in class org.sbml.jsbml.SBMLWriter

unsetProgramVersion() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

Unsets the variable programVersion

unsetProgramVersion() - Method in class org.sbml.jsbml.SBMLWriter

unsetQualifier() - Method in class org.sbml.jsbml.CVTerm

Unsets the qualifier if it is set.

unsetQualifierType() - Method in class org.sbml.jsbml.CVTerm

Unsets the qualifier type if it is set.

unsetQualitativeSpecies() - Method in class org.sbml.jsbml.ext.qual.Input

unsetQualitativeSpecies() - Method in class org.sbml.jsbml.ext.qual.Output

unsetR() - Method in class org.sbml.jsbml.ext.render.RadialGradient

Unsets the variable r

unsetReactant() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentMapInProduct

Unsets the variable reactant.

unsetReactantComponent() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeComponentMapInProduct

Unsets the variable reactantComponent.

unsetReactantSpeciesFeature() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureChange

Unsets the variable reactantSpeciesFeature.

unsetReaction() - Method in class org.sbml.jsbml.ext.fbc.FluxBound

Deprecated.

Only defined in FBC version 1.

unsetReaction() - Method in class org.sbml.jsbml.ext.fbc.FluxObjective

Unsets the variable reaction

unsetReaction() - Method in class org.sbml.jsbml.ext.layout.GeneralGlyph

unsetReaction() - Method in class org.sbml.jsbml.ext.layout.ReactionGlyph

unsetReference() - Method in class org.sbml.jsbml.ext.layout.AbstractReferenceGlyph

unsetReferencedAttribute() - Method in class org.sbml.jsbml.ext.arrays.Index

Unsets the variable referencedAttribute

unsetReferenceRenderInformation() - Method in class org.sbml.jsbml.ext.render.RenderInformationBase

Unsets the variable referenceRenderInformation

unsetRenderInformation() - Method in class org.sbml.jsbml.ext.render.AbstractRenderPlugin

Unsets the variable renderInformation

unsetReplacedBy() - Method in class org.sbml.jsbml.ext.comp.CompSBasePlugin

Unsets the variable replacedBy

unsetRepresentationType() - Method in class org.sbml.jsbml.ext.multi.MultiASTNodePlugin

Unsets the variable representationType.

unsetResultLevel() - Method in class org.sbml.jsbml.ext.qual.FunctionTerm

Unsets the resultLevel.

unsetReverseTransformation() - Method in class org.sbml.jsbml.ext.spatial.CSGHomogeneousTransformation

Unsets the variable reverseTransformation

unsetReversible() - Method in class org.sbml.jsbml.Reaction

Sets the reversible Boolean of this Reaction to null.

unsetRoleList() - Method in class org.sbml.jsbml.ext.render.Style

Unsets the variable roleList

unsetRotateAngleInRadians() - Method in class org.sbml.jsbml.ext.spatial.CSGRotation

Unsets the variable rotateAngleInRadians

unsetRotateAxisX() - Method in class org.sbml.jsbml.ext.spatial.CSGRotation

Unsets the variable rotateAxisX

unsetRotateAxisY() - Method in class org.sbml.jsbml.ext.spatial.CSGRotation

Unsets the variable rotateAxisY

unsetRotateAxisZ() - Method in class org.sbml.jsbml.ext.spatial.CSGRotation

Unsets the variable rotateAxisZ

unsetRx() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable rx

unsetRx() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable rx

unsetRy() - Method in class org.sbml.jsbml.ext.render.Ellipse

Unsets the variable ry

unsetRy() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable ry

unsetSampledField() - Method in class org.sbml.jsbml.ext.spatial.SampledFieldGeometry

Unsets the variable sampledField

unsetSampledValue() - Method in class org.sbml.jsbml.ext.spatial.SampledVolume

Unsets the variable sampledValue

unsetSamples() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable samples.

unsetSamplesLength() - Method in class org.sbml.jsbml.ext.spatial.SampledField

Unsets the variable samplesLength.

unsetSBaseListType() - Method in class org.sbml.jsbml.ListOf

Sets the SBaseListType of this ListOf to SBaseListType.none.

unsetSBaseRef() - Method in class org.sbml.jsbml.ext.comp.SBaseRef

Unsets the variable sBaseRef

unsetSBOTerm() - Method in class org.sbml.jsbml.AbstractSBase

unsetSBOTerm() - Method in interface org.sbml.jsbml.SBase

Unsets the value of the 'sboTerm' attribute of this SBML object.

unsetScale() - Method in class org.sbml.jsbml.Unit

unsetScaleX() - Method in class org.sbml.jsbml.ext.spatial.CSGScale

Unsets the variable scaleX

unsetScaleY() - Method in class org.sbml.jsbml.ext.spatial.CSGScale

Unsets the variable scaleY

unsetScaleZ() - Method in class org.sbml.jsbml.ext.spatial.CSGScale

Unsets the variable scaleZ

unsetSign() - Method in class org.sbml.jsbml.ext.qual.Input

unsetSize() - Method in class org.sbml.jsbml.Compartment

Unsets the value of the 'size' attribute of this Compartment.

unsetSize() - Method in class org.sbml.jsbml.ext.arrays.Dimension

Unsets the variable size

unsetSource() - Method in class org.sbml.jsbml.ext.comp.ExternalModelDefinition

Unsets the variable source

unsetSpatialDimension() - Method in class org.sbml.jsbml.ext.spatial.DomainType

Unsets the variable spatialDimension

unsetSpatialDimensions() - Method in class org.sbml.jsbml.Compartment

Sets the spatialDimensions of this compartment to null.

unsetSpatialId() - Method in class org.sbml.jsbml.ext.spatial.AbstractSpatialNamedSBase

unsetSpatialId() - Method in class org.sbml.jsbml.ext.spatial.AnalyticVolume

unsetSpatialId() - Method in interface org.sbml.jsbml.ext.spatial.SpatialNamedSBase

Unsets the variable spatialId

unsetSpatialIndex() - Method in class org.sbml.jsbml.ext.dyn.SpatialComponent

Unsets the variable spatialIndex

unsetSpatialPoints() - Method in class org.sbml.jsbml.ext.spatial.ParametricGeometry

Unsets the variable spatialPoints.

unsetSpatialRef() - Method in class org.sbml.jsbml.ext.spatial.SpatialSymbolReference

Unsets the variable spatialRef.

unsetSpatialSizeUnits() - Method in class org.sbml.jsbml.Species

Deprecated.

Only valid for SBML Level 2 Versions 1 and 2.

unsetSpecies() - Method in class org.sbml.jsbml.ext.layout.SpeciesGlyph

unsetSpeciesFeatureType() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeature

Unsets the variable speciesFeatureType.

unsetSpeciesReference() - Method in class org.sbml.jsbml.ext.layout.SpeciesReferenceGlyph

unsetSpeciesReference() - Method in class org.sbml.jsbml.ext.multi.MultiASTNodePlugin

Unsets the variable speciesReference.

unsetSpeciesType() - Method in class org.sbml.jsbml.ext.multi.MultiSpeciesPlugin

Unsets the variable speciesType.

unsetSpeciesType() - Method in class org.sbml.jsbml.ext.multi.SpeciesTypeInstance

Unsets the variable speciesType.

unsetSpeciesTypeComponentIndex() - Method in class org.sbml.jsbml.ext.multi.DenotedSpeciesTypeComponentIndex

Unsets the variable speciesTypeComponentIndex.

unsetSpreadMethod() - Method in class org.sbml.jsbml.ext.render.GradientBase

Unsets the variable spreadMethod

unsetStartHead() - Method in class org.sbml.jsbml.ext.render.RenderCurve

Unsets the variable startHead

unsetStartHead() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable startHead

unsetStoichiometry() - Method in class org.sbml.jsbml.SpeciesReference

Unsets the stoichiometry property of this element.

unsetStoichiometryMath() - Method in class org.sbml.jsbml.SpeciesReference

Deprecated.

unsetStopColor() - Method in class org.sbml.jsbml.ext.render.GradientStop

Unsets the variable stopColor

unsetStrict() - Method in class org.sbml.jsbml.ext.fbc.FBCModelPlugin

Unsets the variable strict.

unsetStroke() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive1D

Unsets the variable stroke

unsetStrokeDashArray() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive1D

Unsets the variable strokeDashArray

unsetStrokeWidth() - Method in class org.sbml.jsbml.ext.render.GraphicalPrimitive1D

Unsets the variable strokeWidth

unsetSubmodelRef() - Method in class org.sbml.jsbml.ext.comp.ReplacedBy

Unsets the variable submodelRef

unsetSubmodelRef() - Method in class org.sbml.jsbml.ext.comp.ReplacedElement

Unsets the variable submodelRef

unsetSubstanceUnits() - Method in class org.sbml.jsbml.KineticLaw

Deprecated.

unsetSubstanceUnits() - Method in class org.sbml.jsbml.Model

Sets the Model.substanceUnitsID of this Model to null.

unsetSubstanceUnits() - Method in class org.sbml.jsbml.Species

Unsets the substanceUnits of this Species.

unsetTextAnchor() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable textAnchor

unsetTextAnchor() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable textAnchor

unsetTextAnchor() - Method in class org.sbml.jsbml.ext.render.Text

unsetThresholdLevel() - Method in class org.sbml.jsbml.ext.qual.Input

unsetTimeConversionFactor() - Method in class org.sbml.jsbml.ext.comp.Submodel

Unsets the variable timeConversionFactor

unsetTimeUnits() - Method in class org.sbml.jsbml.Event

Sets the timeUnitsID of this Event to null.

unsetTimeUnits() - Method in class org.sbml.jsbml.KineticLaw

Deprecated.

unsetTimeUnits() - Method in class org.sbml.jsbml.Model

Sets the timeUnitsID of this Model to null.

unsetTransform() - Method in class org.sbml.jsbml.ext.render.Transformation2D

Unsets the variable transform

unsetTransitionEffect() - Method in class org.sbml.jsbml.ext.qual.Input

unsetTransitionEffect() - Method in class org.sbml.jsbml.ext.qual.Output

unsetTranslateX() - Method in class org.sbml.jsbml.ext.spatial.CSGTranslation

Unsets the variable translateX

unsetTranslateY() - Method in class org.sbml.jsbml.ext.spatial.CSGTranslation

Unsets the variable translateY

unsetTranslateZ() - Method in class org.sbml.jsbml.ext.spatial.CSGTranslation

Unsets the variable translateZ

unsetTrigger() - Method in class org.sbml.jsbml.Event

Sets the trigger of this Event to null and notifies TreeNodeChangeListeners.

unsetType() - Method in class org.sbml.jsbml.ext.fbc.Objective

Unsets the variable type

unsetType() - Method in class org.sbml.jsbml.ext.spatial.BoundaryCondition

Unsets the variable type

unsetType() - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent

Unsets the variable type

unsetTypeList() - Method in class org.sbml.jsbml.ext.render.Style

Unsets the variable typeList

unsetUncertainty() - Method in class org.sbml.jsbml.ext.distrib.DistribSBasePlugin

Unsets the variable uncertainty.

unsetUncertML() - Method in class org.sbml.jsbml.ext.distrib.DrawFromDistribution

Unsets the variable uncertML

unsetUncertML() - Method in class org.sbml.jsbml.ext.distrib.Uncertainty

Unsets the variable uncertML.

unsetUnit() - Method in class org.sbml.jsbml.math.compiler.ASTNode2Value

Removes the unit of this element, i.e., the unit will become invalid.

unsetUnit() - Method in class org.sbml.jsbml.util.compilers.ASTNodeValue

Removes the unit of this element, i.e., the unit will become invalid.

unsetUnitRef() - Method in class org.sbml.jsbml.ext.comp.SBaseRef

Unsets the variable unitRef

unsetUnits() - Method in class org.sbml.jsbml.AbstractNamedSBaseWithUnit

unsetUnits() - Method in class org.sbml.jsbml.ASTNode

Unset the units attribute.

unsetUnits() - Method in class org.sbml.jsbml.ExplicitRule

Deprecated.

This is a requirement for Level 1 Version 1 and Version 2, but can only be used in conjunction with Parameters. In this case this ExplicitRule represents the SBML element ParameterRule.

unsetUnits() - Method in class org.sbml.jsbml.ext.spatial.CoordinateComponent

Unsets the variable unit

unsetUnits() - Method in class org.sbml.jsbml.KineticLaw

Deprecated.

unsetUnits() - Method in class org.sbml.jsbml.math.ASTCnNumberNode

Unset the units attribute.

unsetUnits() - Method in interface org.sbml.jsbml.SBaseWithUnit

Sets the unitsID of this SBaseWithUnit to null.

unsetUnitSize() - Method in class org.sbml.jsbml.ext.spatial.CompartmentMapping

Unsets the variable unitSize

unsetUpperFluxBound() - Method in class org.sbml.jsbml.ext.fbc.FBCReactionPlugin

Unsets the variable upperFluxBound.

unsetUseValuesFromTriggerTime() - Method in class org.sbml.jsbml.Event

Sets the useValuesFromTriggerTime of this Event to null.

unsetValue() - Method in class org.sbml.jsbml.ext.fbc.FluxBound

Deprecated.

Only defined in FBC version 1.

unsetValue() - Method in class org.sbml.jsbml.ext.multi.SpeciesFeatureValue

Unsets the variable value.

unsetValue() - Method in class org.sbml.jsbml.ext.render.ColorDefinition

Unsets the variable value

unsetValue() - Method in class org.sbml.jsbml.ext.spatial.Boundary

Unsets the variable value

unsetValue() - Method in interface org.sbml.jsbml.Quantity

Unsets the value of this Quantity.

unsetValue() - Method in class org.sbml.jsbml.QuantityWithUnit

unsetValue() - Method in class org.sbml.jsbml.SpeciesReference

unsetVariable() - Method in interface org.sbml.jsbml.Assignment

Removes the reference from this InitialAssignment to its Variable if there was any, i.e., the Variable is set to null.

unsetVariable() - Method in class org.sbml.jsbml.EventAssignment

unsetVariable() - Method in class org.sbml.jsbml.ExplicitRule

unsetVariable() - Method in class org.sbml.jsbml.InitialAssignment

unsetVersionMajor() - Method in class org.sbml.jsbml.ext.render.AbstractRenderPlugin

Unsets the variable versionMajor

unsetVersionMinor() - Method in class org.sbml.jsbml.ext.render.AbstractRenderPlugin

Unsets the variable versionMinor

unsetViableWithoutChange() - Method in class org.sbml.jsbml.ext.req.ChangedMath

Unsets the variable viableWithoutChange

unsetVolume() - Method in class org.sbml.jsbml.Compartment

Deprecated.

The volume attribute is only defined in SBML Level 1. Please use Compartment.unsetSize()

unsetVolumeUnits() - Method in class org.sbml.jsbml.Model

Sets the Model.volumeUnitsID of this Model to null.

unsetVTextAnchor() - Method in interface org.sbml.jsbml.ext.render.FontRenderStyle

Unsets the variable VTextAnchor

unsetVTextAnchor() - Method in class org.sbml.jsbml.ext.render.RenderGroup

Unsets the variable vTextAnchor

unsetVTextAnchor() - Method in class org.sbml.jsbml.ext.render.Text

unsetWidth() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable width

unsetWidth() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable width

unsetX() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable x

unsetX() - Method in interface org.sbml.jsbml.ext.render.Point3D

Unsets the variable x

unsetX() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable x

unsetX() - Method in class org.sbml.jsbml.ext.render.RenderPoint

unsetX() - Method in class org.sbml.jsbml.ext.render.Text

unsetX1() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable x1

unsetX1() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable x1

unsetX2() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable x2

unsetX2() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable x2

unsetY() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable y

unsetY() - Method in interface org.sbml.jsbml.ext.render.Point3D

Unsets the variable y

unsetY() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable y

unsetY() - Method in class org.sbml.jsbml.ext.render.RenderPoint

unsetY() - Method in class org.sbml.jsbml.ext.render.Text

unsetY1() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable y1

unsetY1() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable y1

unsetY2() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable y2

unsetY2() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable y2

unsetZ() - Method in class org.sbml.jsbml.ext.render.Image

Unsets the variable z

unsetZ() - Method in interface org.sbml.jsbml.ext.render.Point3D

Unsets the variable z

unsetZ() - Method in class org.sbml.jsbml.ext.render.Rectangle

Unsets the variable z

unsetZ() - Method in class org.sbml.jsbml.ext.render.RenderPoint

unsetZ() - Method in class org.sbml.jsbml.ext.render.Text

unsetZ1() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable z1

unsetZ1() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable z1

unsetZ2() - Method in class org.sbml.jsbml.ext.render.LinearGradient

Unsets the variable z2

unsetZ2() - Method in class org.sbml.jsbml.ext.render.RenderCubicBezier

Unsets the variable z2

updateVariables() - Method in class org.sbml.jsbml.ASTNode

For a better performance ASTNodes can store a direct pointer to a variable element.

upperFluxBound - Static variable in class org.sbml.jsbml.ext.fbc.FBCConstants

Introduced to FBC in version 2.

URI_AVOGADRO_DEFINITION - Static variable in class org.sbml.jsbml.ASTNode

The URI for the definition of the csymbol for avogadro.

URI_BIOMODELS_NET_BIOLOGY_QUALIFIERS - Static variable in class org.sbml.jsbml.CVTerm

The Uniform Resource Identifier pointing to http://biomodels.net/biology-qualifiers/

URI_BIOMODELS_NET_MODEL_QUALIFIERS - Static variable in class org.sbml.jsbml.CVTerm

The Uniform Resource Identifier pointing to http://biomodels.net/model-qualifiers/

URI_DELAY_DEFINITION - Static variable in class org.sbml.jsbml.ASTNode

The URI for the definition of the csymbol for delay.

URI_MATHML_DEFINITION - Static variable in class org.sbml.jsbml.ASTNode

URI for the definition of MathML.

URI_MATHML_PREFIX - Static variable in class org.sbml.jsbml.ASTNode

URI prefix for the definition of MathML, it will be used to write the sbml file

URI_NAMESPACE_L1 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 1 Version 1 and 2.

URI_NAMESPACE_L2V1 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 2 Version 1.

URI_NAMESPACE_L2V2 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 2 Version 2.

URI_NAMESPACE_L2V3 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 2 Version 3.

URI_NAMESPACE_L2V4 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 2 Version 4.

URI_NAMESPACE_L2V5 - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 2 Version 5.

URI_NAMESPACE_L3V1Core - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 3 Version 1.

URI_NAMESPACE_L3V2Core - Static variable in class org.sbml.jsbml.SBMLDocument

The namespace URI of SBML Level 3 Version 2.

URI_PURL_ELEMENTS - Static variable in class org.sbml.jsbml.JSBML

URI for the definition of purl elements

URI_PURL_TERMS - Static variable in class org.sbml.jsbml.JSBML

URI for purl terms.

URI_RDF_SYNTAX_NS - Static variable in class org.sbml.jsbml.Annotation

The RDF syntax name space definition URI.

URI_RDF_VCARD_NS - Static variable in class org.sbml.jsbml.Creator

URI for the RDF syntax name space definition for VCards.

URI_TIME_DEFINITION - Static variable in class org.sbml.jsbml.ASTNode

The URI for the definition of the csymbol for time.

URI_XHTML_DEFINITION - Static variable in class org.sbml.jsbml.JSBML

URI for the definition of XHTML.

usepackage(String, String...) - Method in class org.sbml.jsbml.math.compiler.LaTeXCompiler

Creates a usepackage command for the given package with the optional options.

usepackage(String, String...) - Method in class org.sbml.jsbml.util.compilers.LaTeXCompiler

Creates a usepackage command for the given package with the optional options.

userObject - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent

userObjectKeySet() - Method in class org.sbml.jsbml.AbstractTreeNode

userObjectKeySet() - Method in class org.sbml.jsbml.math.ASTUnknown

userObjectKeySet() - Method in interface org.sbml.jsbml.util.TreeNodeWithChangeSupport

useValuesFromTriggerTime - Static variable in class org.sbml.jsbml.util.TreeNodeChangeEvent

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