libSBML C++ API  5.20.4
Enumerations
FbcSBMLError.h File Reference

Represents SBML errors and other diagnostics. More...

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Enumerations

enum  FbcSBMLErrorCode_t {
  FbcUnknown = 2010100 ,
  FbcNSUndeclared = 2010101 ,
  FbcElementNotInNs = 2010102 ,
  FbcDuplicateComponentId = 2010301 ,
  FbcSBMLSIdSyntax = 2010302 ,
  FbcAttributeRequiredMissing = 2020101 ,
  FbcAttributeRequiredMustBeBoolean = 2020102 ,
  FbcRequiredFalse = 2020103 ,
  FbcOnlyOneEachListOf = 2020201 ,
  FbcNoEmptyListOfs = 2020202 ,
  FbcLOFluxBoundsAllowedElements = 2020203 ,
  FbcLOObjectivesAllowedElements = 2020204 ,
  FbcLOFluxBoundsAllowedAttributes = 2020205 ,
  FbcLOObjectivesAllowedAttributes = 2020206 ,
  FbcActiveObjectiveSyntax = 2020207 ,
  FbcActiveObjectiveRefersObjective = 2020208 ,
  FbcModelMustHaveStrict = 2020209 ,
  FbcModelStrictMustBeBoolean = 2020210 ,
  FbcLOGeneProductsAllowedElements = 2020211 ,
  FbcLOGeneProductsAllowedAttributes = 2020212 ,
  FbcLOUserConstraintsAllowedElements = 2020213 ,
  FbcLOUserConstraintsAllowedAttributes = 2020214 ,
  FbcSpeciesAllowedL3Attributes = 2020301 ,
  FbcSpeciesChargeMustBeInteger = 2020302 ,
  FbcSpeciesFormulaMustBeString = 2020303 ,
  FbcSpeciesChargeMustBeDouble = 2020304 ,
  FbcFluxBoundAllowedL3Attributes = 2020401 ,
  FbcFluxBoundAllowedElements = 2020402 ,
  FbcFluxBoundRequiredAttributes = 2020403 ,
  FbcFluxBoundRectionMustBeSIdRef = 2020404 ,
  FbcFluxBoundNameMustBeString = 2020405 ,
  FbcFluxBoundOperationMustBeEnum = 2020406 ,
  FbcFluxBoundValueMustBeDouble = 2020407 ,
  FbcFluxBoundReactionMustExist = 2020408 ,
  FbcFluxBoundsForReactionConflict = 2020409 ,
  FbcObjectiveAllowedL3Attributes = 2020501 ,
  FbcObjectiveAllowedElements = 2020502 ,
  FbcObjectiveRequiredAttributes = 2020503 ,
  FbcObjectiveNameMustBeString = 2020504 ,
  FbcObjectiveTypeMustBeEnum = 2020505 ,
  FbcObjectiveOneListOfObjectives = 2020506 ,
  FbcObjectiveLOFluxObjMustNotBeEmpty = 2020507 ,
  FbcObjectiveLOFluxObjOnlyFluxObj = 2020508 ,
  FbcObjectiveLOFluxObjAllowedAttribs = 2020509 ,
  FbcFluxObjectAllowedL3Attributes = 2020601 ,
  FbcFluxObjectAllowedElements = 2020602 ,
  FbcFluxObjectRequiredAttributes = 2020603 ,
  FbcFluxObjectNameMustBeString = 2020604 ,
  FbcFluxObjectReactionMustBeSIdRef = 2020605 ,
  FbcFluxObjectReactionMustExist = 2020606 ,
  FbcFluxObjectCoefficientMustBeDouble = 2020607 ,
  FbcFluxObjectCoefficientWhenStrict = 2020608 ,
  FbcFluxObjectiveVariableTypeMustBeFbcVariableTypeEnum = 2020609 ,
  FbcFluxObjectReaction2MustBeSIdRef = 2020610 ,
  FbcFluxObjectReaction2MustExist = 2020611 ,
  FbcReactionOnlyOneGeneProdAss = 2020701 ,
  FbcReactionAllowedAttributes = 2020702 ,
  FbcReactionLwrBoundSIdRef = 2020703 ,
  FbcReactionUpBoundSIdRef = 2020704 ,
  FbcReactionLwrBoundRefExists = 2020705 ,
  FbcReactionUpBoundRefExists = 2020706 ,
  FbcReactionMustHaveBoundsStrict = 2020707 ,
  FbcReactionConstantBoundsStrict = 2020708 ,
  FbcReactionBoundsMustHaveValuesStrict = 2020709 ,
  FbcReactionBoundsNotAssignedStrict = 2020710 ,
  FbcReactionLwrBoundNotInfStrict = 2020711 ,
  FbcReactionUpBoundNotNegInfStrict = 2020712 ,
  FbcReactionLwrLessThanUpStrict = 2020713 ,
  FbcSpeciesReferenceConstantStrict = 2020714 ,
  FbcSpeciesRefsStoichMustBeRealStrict = 2020715 ,
  FbcSpeciesRefNotAssignedStrict = 2020716 ,
  FbcGeneProdAssocAllowedCoreAttribs = 2020801 ,
  FbcGeneProdAssocAllowedCoreElements = 2020802 ,
  FbcGeneProdAssocAllowedAttribs = 2020803 ,
  FbcGeneProdAssocIdSyntax = 2020804 ,
  FbcGeneProdAssocContainsOneElement = 2020805 ,
  FbcGeneProdAssocNameMustBeString = 2020806 ,
  FbcGeneProdRefAllowedCoreAttribs = 2020901 ,
  FbcGeneProdRefAllowedCoreElements = 2020902 ,
  FbcGeneProdRefAllowedAttribs = 2020903 ,
  FbcGeneProdRefGeneProductSIdRef = 2020904 ,
  FbcGeneProdRefGeneProductExists = 2020908 ,
  FbcAndAllowedCoreAttributes = 2021001 ,
  FbcAndAllowedCoreElements = 2021002 ,
  FbcAndTwoChildren = 2021003 ,
  FbcOrAllowedCoreAttributes = 2021101 ,
  FbcOrAllowedCoreElements = 2021102 ,
  FbcOrTwoChildren = 2021103 ,
  FbcGeneProductAllowedCoreAttributes = 2021201 ,
  FbcGeneProductAllowedCoreElements = 2021202 ,
  FbcGeneProductAllowedAttributes = 2021203 ,
  FbcGeneProductLabelMustBeString = 2021204 ,
  FbcGeneProductLabelMustBeUnique = 2021205 ,
  FbcGeneProductNameMustBeString = 2021206 ,
  FbcGeneProductAssocSpeciesMustExist = 2021207 ,
  FbcUserDefinedConstraintComponentAllowedCoreAttributes = 2021301 ,
  FbcUserDefinedConstraintComponentAllowedCoreElements = 2021302 ,
  FbcUserDefinedConstraintComponentAllowedAttributes = 2021303 ,
  FbcUserDefinedConstraintComponentCoefficientMustBeParameter = 2021304 ,
  FbcUserDefinedConstraintComponentVariableMustBeReactionOrParameter = 2021305 ,
  FbcUserDefinedConstraintComponentVariableTypeMustBeFbcVariableTypeEnum = 2021306 ,
  FbcUserDefinedConstraintComponentNameMustBeString = 2021307 ,
  FbcUserDefinedConstraintComponentVariable2MustBeReactionOrParameter = 2021308 ,
  FbcUserDefinedConstraintAllowedCoreAttributes = 2021401 ,
  FbcUserDefinedConstraintAllowedCoreElements = 2021402 ,
  FbcUserDefinedConstraintAllowedAttributes = 2021403 ,
  FbcUserDefinedConstraintAllowedElements = 2021404 ,
  FbcUserDefinedConstraintLowerBoundMustBeParameter = 2021405 ,
  FbcUserDefinedConstraintUpperBoundMustBeParameter = 2021406 ,
  FbcUserDefinedConstraintNameMustBeString = 2021407 ,
  FbcUserDefinedConstraintLOUserDefinedConstraintComponentsAllowedCoreElements = 2021408 ,
  FbcUserDefinedConstraintLOUserDefinedConstraintComponentsAllowedCoreAttributes = 2021409 ,
  FbcKeyValuePairAllowedCoreAttributes = 2021501 ,
  FbcKeyValuePairAllowedCoreElements = 2021502 ,
  FbcKeyValuePairAllowedAttributes = 2021503 ,
  FbcKeyValuePairKeyMustBeString = 2021504 ,
  FbcKeyValuePairNameMustBeString = 2021505 ,
  FbcKeyValuePairValueMustBeString = 2021506 ,
  FbcKeyValuePairKvp_uriMustBeString = 2021507 ,
  FbcSBaseLOKeyValuePairsAllowedAttributes = 2021508 ,
  FbcSBaseLOKeyValuePairsAllowedCoreAttributes = 2021509
}
 Codes for all SBML-level errors and warnings from the 'fbc' package. More...
 

Detailed Description

Represents SBML errors and other diagnostics.

Author
Michael Hucka
Sarah Keating

Enumeration Type Documentation

◆ FbcSBMLErrorCode_t

enum FbcSBMLErrorCode_t

Codes for all SBML-level errors and warnings from the 'fbc' package.

These are distinguished from other SBML error codes by having a number between 2000000 and 2099999.

Calling programs may wish to check which enumeration a given SBMLError object's error identifier is actually from:
  • 0010000 to 0099999: SBMLErrorCode_t (a problem with the SBML core specification)
  • 1000000 to 1099999: CompSBMLErrorCode_t (a problem with the SBML Level 3 Hierarchical Model Composition package specification).
  • 2000000 to 2099999: FbcSBMLErrorCode_t (a problem with the SBML Level 3 Flux Balance Constraints package specification).
  • 3000000 to 3099999: QualSBMLErrorCode_t (a problem with the SBML Level 3 Qualitative Models package specification).
  • 6000000 to 6099999: LayoutSBMLErrorCode_t (a problem with the SBML Level 3 Layout package specification).
Other error code ranges are reserved for other packages.
Enumerator
FbcUnknown 

Unknown error from fbc

FbcNSUndeclared 

The fbc ns is not correctly declared

FbcElementNotInNs 

Element not in fbc namespace

FbcDuplicateComponentId 

Duplicate 'id' attribute value

FbcSBMLSIdSyntax 

Invalid 'id' attribute

FbcAttributeRequiredMissing 

Required fbc:required attribute on <sbml>

FbcAttributeRequiredMustBeBoolean 

The fbc:required attribute must be Boolean

FbcRequiredFalse 

The fbc:required attribute must be 'false'

FbcOnlyOneEachListOf 

One of each list of allowed

FbcNoEmptyListOfs 

ListOf elements cannot be empty

FbcLOFluxBoundsAllowedElements 

Allowed elements on ListOfFluxBounds

FbcLOObjectivesAllowedElements 

Allowed elements on ListOfObjectives

FbcLOFluxBoundsAllowedAttributes 

Allowed attributes on ListOfFluxBounds

FbcLOObjectivesAllowedAttributes 

Allowed attributes on ListOfObjectives

FbcActiveObjectiveSyntax 

Type of activeObjective attribute

FbcActiveObjectiveRefersObjective 

ActiveObjective must reference Objective

FbcModelMustHaveStrict 

'Strict' attribute required on <model>

FbcModelStrictMustBeBoolean 

'Strict' attribute must be boolean

FbcLOGeneProductsAllowedElements 

Allowed elements on ListOfGeneProducts

FbcLOGeneProductsAllowedAttributes 

Allowed attributes on ListOfGeneProducts

FbcLOUserConstraintsAllowedElements 
FbcLOUserConstraintsAllowedAttributes 
FbcSpeciesAllowedL3Attributes 

Species allowed attributes

FbcSpeciesChargeMustBeInteger 

Charge must be integer

FbcSpeciesFormulaMustBeString 

Chemical formula must be string

FbcSpeciesChargeMustBeDouble 

Charge must be double

FbcFluxBoundAllowedL3Attributes 

<fluxBound> may only have 'metaId' and 'sboTerm' from L3 namespace

FbcFluxBoundAllowedElements 

<fluxBound> may only have <notes> and <annotations> from L3 Core

FbcFluxBoundRequiredAttributes 

Invalid attribute found on <fluxBound> object

FbcFluxBoundRectionMustBeSIdRef 

Datatype for 'fbc:reaction' must be SIdRef

FbcFluxBoundNameMustBeString 

The attribute 'fbc:name' must be of the data type string

FbcFluxBoundOperationMustBeEnum 

The attribute 'fbc:operation' must be of data type FbcOperation

FbcFluxBoundValueMustBeDouble 

The attribute 'fbc:value' must be of the data type double

FbcFluxBoundReactionMustExist 

'fbc:reaction' must refer to valid reaction

FbcFluxBoundsForReactionConflict 

Conflicting set of FluxBounds for a reaction

FbcObjectiveAllowedL3Attributes 

<objective> may only have 'metaId' and 'sboTerm' from L3 namespace

FbcObjectiveAllowedElements 

<objective> may only have <notes> and <annotations> from L3 Core

FbcObjectiveRequiredAttributes 

Invalid attribute found on <objective> object

FbcObjectiveNameMustBeString 

The attribute 'fbc:name' must be of the data type string

FbcObjectiveTypeMustBeEnum 

The attribute 'fbc:type' must be of data type FbcType.

FbcObjectiveOneListOfObjectives 

An <objective> must have one <listOfFluxObjectives>.

FbcObjectiveLOFluxObjMustNotBeEmpty 

<listOfFluxObjectives> subobject must not be empty

FbcObjectiveLOFluxObjOnlyFluxObj 

Invalid element found in <listOfFluxObjectives>

FbcObjectiveLOFluxObjAllowedAttribs 

<listOfFluxObjectives> may only have 'metaId' and 'sboTerm' from L3 core

FbcFluxObjectAllowedL3Attributes 

<fluxObjective> may only have 'metaId' and 'sboTerm' from L3 namespace

FbcFluxObjectAllowedElements 

<fluxObjective> may only have <notes> and <annotations> from L3 Core

FbcFluxObjectRequiredAttributes 

Invalid attribute found on <fluxObjective> object

FbcFluxObjectNameMustBeString 

The attribute 'fbc:name' must be of the data type string

FbcFluxObjectReactionMustBeSIdRef 

Datatype for 'fbc:reaction' must be SIdRef

FbcFluxObjectReactionMustExist 

'fbc:reaction' must refer to valid reaction

FbcFluxObjectCoefficientMustBeDouble 

The attribute 'fbc:coefficient' must be of the data type double

FbcFluxObjectCoefficientWhenStrict 

The 'fbc:coefficient' must be declared when strict

FbcFluxObjectiveVariableTypeMustBeFbcVariableTypeEnum 
FbcFluxObjectReaction2MustBeSIdRef 

Datatype for 'fbc:reaction' must be SIdRef

FbcFluxObjectReaction2MustExist 

'fbc:reaction' must refer to valid reaction

FbcReactionOnlyOneGeneProdAss 

One GeneProductAssociation in a Reaction

FbcReactionAllowedAttributes 

Fbc attributes on a Reaction

FbcReactionLwrBoundSIdRef 

LowerBound must be SIdRef

FbcReactionUpBoundSIdRef 

UpperBound must be SIdRef

FbcReactionLwrBoundRefExists 

LowerBound must point to Parameter

FbcReactionUpBoundRefExists 

UpperBound must point to Parameter

FbcReactionMustHaveBoundsStrict 

Reaction must have bounds when strict

FbcReactionConstantBoundsStrict 

Reaction bounds constant when strict

FbcReactionBoundsMustHaveValuesStrict 

Reaction bounds must have values when strict

FbcReactionBoundsNotAssignedStrict 

Reaction bounds not assigned when strict

FbcReactionLwrBoundNotInfStrict 

LowerBound cannot be INF when strict

FbcReactionUpBoundNotNegInfStrict 

UpperBound cannot be -INF when strict

FbcReactionLwrLessThanUpStrict 

LowerBound less than upperBound when strict

FbcSpeciesReferenceConstantStrict 

SpeciesReferences must be constant when strict

FbcSpeciesRefsStoichMustBeRealStrict 

Stoichiometry of SpeciesReferences must be real valued when strict

FbcSpeciesRefNotAssignedStrict 

SpeciesReference not target of InitialAssignment when strict"

FbcGeneProdAssocAllowedCoreAttribs 

Allowed core attributes on <GeneProductAssociation>

FbcGeneProdAssocAllowedCoreElements 

Allowed core elements on <GeneProductAssociation>

FbcGeneProdAssocAllowedAttribs 

Allowed fbc attributes on <GeneProductAssociation>

FbcGeneProdAssocIdSyntax 

'fbc:id' must have SId syntax

FbcGeneProdAssocContainsOneElement 

<GeneProductAssociation> must contain one concrete object

FbcGeneProdAssocNameMustBeString 

'fbc:name' must be string

FbcGeneProdRefAllowedCoreAttribs 

Allowed core attributes on <GeneProductRef>

FbcGeneProdRefAllowedCoreElements 

Allowed core elements on <GeneProductRef>

FbcGeneProdRefAllowedAttribs 

Allowed fbc attributes on <GeneProductRef>

FbcGeneProdRefGeneProductSIdRef 

'fbc:geneProduct' must be SIdRef

FbcGeneProdRefGeneProductExists 

'fbc:geneProduct' must point to existing <GeneProduct>

FbcAndAllowedCoreAttributes 

Allowed core attributes on <And>

FbcAndAllowedCoreElements 

Allowed core elements on <And>

FbcAndTwoChildren 

<And> must have at least two child elements

FbcOrAllowedCoreAttributes 

Allowed core attributes on <Or>

FbcOrAllowedCoreElements 

Allowed core elements on <Or>

FbcOrTwoChildren 

<Or> must have at least two child elements

FbcGeneProductAllowedCoreAttributes 

Allowed core attributes on <GeneProduct>

FbcGeneProductAllowedCoreElements 

Allowed core elements on <GeneProduct>

FbcGeneProductAllowedAttributes 

Allowed fbc attributes on <GeneProduct>

FbcGeneProductLabelMustBeString 

'fbc:label' must be string

FbcGeneProductLabelMustBeUnique 

'fbc:label' must be unique

FbcGeneProductNameMustBeString 

'fbc:name' must be string

FbcGeneProductAssocSpeciesMustExist 

'fbc:associatedSpecies' must point to existing <species>

FbcUserDefinedConstraintComponentAllowedCoreAttributes 
FbcUserDefinedConstraintComponentAllowedCoreElements 
FbcUserDefinedConstraintComponentAllowedAttributes 
FbcUserDefinedConstraintComponentCoefficientMustBeParameter 
FbcUserDefinedConstraintComponentVariableMustBeReactionOrParameter 
FbcUserDefinedConstraintComponentVariableTypeMustBeFbcVariableTypeEnum 
FbcUserDefinedConstraintComponentNameMustBeString 
FbcUserDefinedConstraintComponentVariable2MustBeReactionOrParameter 
FbcUserDefinedConstraintAllowedCoreAttributes 
FbcUserDefinedConstraintAllowedCoreElements 
FbcUserDefinedConstraintAllowedAttributes 
FbcUserDefinedConstraintAllowedElements 
FbcUserDefinedConstraintLowerBoundMustBeParameter 
FbcUserDefinedConstraintUpperBoundMustBeParameter 
FbcUserDefinedConstraintNameMustBeString 
FbcUserDefinedConstraintLOUserDefinedConstraintComponentsAllowedCoreElements 
FbcUserDefinedConstraintLOUserDefinedConstraintComponentsAllowedCoreAttributes 
FbcKeyValuePairAllowedCoreAttributes 
FbcKeyValuePairAllowedCoreElements 
FbcKeyValuePairAllowedAttributes 
FbcKeyValuePairKeyMustBeString 
FbcKeyValuePairNameMustBeString 
FbcKeyValuePairValueMustBeString 
FbcKeyValuePairKvp_uriMustBeString 
FbcSBaseLOKeyValuePairsAllowedAttributes 
FbcSBaseLOKeyValuePairsAllowedCoreAttributes