Method Additions Index

Removals

Additions

Changes

Bold is New, ~~strike~~ is deleted

A C E F G I L M O R S T U V X Y Z TOP
accept
  type (SBase) in org.sbml.jsbml.KineticLaw
  type (SBase) in org.sbml.jsbml.Model
  type (SBase) in org.sbml.jsbml.ext.comp.CompModelPlugin
  type (SBase) in org.sbml.jsbml.ext.spatial.SpatialModelPlugin
addAdditionalGraphicalObject (GraphicalObject)
addAllChangeListeners
  type (Collection<TreeNodeChangeListener>, boolean) in org.sbml.jsbml.AbstractTreeNode
  type (Collection<TreeNodeChangeListener>, boolean) in org.sbml.jsbml.util.TreeNodeWithChangeSupport
addPlugin
  type (String, SBasePlugin) in org.sbml.jsbml.AbstractSBase
  type (String, SBasePlugin) in org.sbml.jsbml.SBase
addReferenceGlyph (ReferenceGlyph)
addSampledField (SampledField)

C A E F G I L M O R S T U V X Y Z TOP
checkBrackets (ASTNode)
checkDenominatorBrackets (ASTNode)
clone
  type () in org.sbml.jsbml.ext.fbc.ListOfObjectives
  type () in org.sbml.jsbml.ext.groups.ListOfMemberConstraint
  type () in org.sbml.jsbml.util.ListOfWithName
createGeneralGlyph
  type () in org.sbml.jsbml.ext.layout.GeneralGlyph
  type (String) in org.sbml.jsbml.ext.layout.GeneralGlyph
createGroup
  type (String) in org.sbml.jsbml.ext.groups.GroupsModelPlugin
  type (String, String[]) in org.sbml.jsbml.ext.groups.GroupsModelPlugin
createMemberWithIdRef
  type (String) in org.sbml.jsbml.ext.groups.Group
  type (String, String) in org.sbml.jsbml.ext.groups.Group
createMemberWithMetaIdRef
  type (String) in org.sbml.jsbml.ext.groups.Group
  type (String, String) in org.sbml.jsbml.ext.groups.Group
createMixedGeometry
  type () in org.sbml.jsbml.ext.spatial.Geometry
  type (String) in org.sbml.jsbml.ext.spatial.Geometry
createPluginFor (SBase)
createReferenceGlyph ()
createReferenceGlyphForList
  type () in org.sbml.jsbml.ext.layout.GeneralGlyph
  type (String) in org.sbml.jsbml.ext.layout.GeneralGlyph
createSampledField
  type () in org.sbml.jsbml.ext.spatial.Geometry
  type (String) in org.sbml.jsbml.ext.spatial.Geometry

E A C F G I L M O R S T U V X Y Z TOP
equals (Object)

F A C E G I L M O R S T U V X Y Z TOP
filterCVTerms
  type (Qualifier, boolean, String[]) in org.sbml.jsbml.AbstractSBase
  type (Qualifier, boolean, String[]) in org.sbml.jsbml.SBase
filterResources
  type (String[]) in org.sbml.jsbml.CVTerm
  type (Pattern[]) in org.sbml.jsbml.CVTerm
formulaToString (ASTNode, FormulaCompiler)

G A C E F I L M O R S T U V X Y Z TOP
getActivator ()
getBoundaryMaximum ()
getBoundaryMinimum ()
getChild (int)
getChildElement (String, String)
getChildElements (String, String)
getComplementA ()
getComplementB ()
getCompression ()
getCoordinate ()
getCoordinateReference1 ()
getCoordinateReference2 ()
getData ()
getDataString ()
getDiffusionKind ()
getDomainType ()
getEventAssignment (String)
getExtensionCount
  type () in org.sbml.jsbml.AbstractSBase
  type () in org.sbml.jsbml.SBase
getExternalModelDefinition
  type (int) in org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin
  type (String) in org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin
getFluxBoundCount ()
getIdManager (SBase)
getInterpolation ()
getIsActive ()
getListOfSampledFields ()
getMemberConstraintCount ()
getModelDefinition
  type (int) in org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin
  type (String) in org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin
getNamespaceFor (int, int, int)
getNumCompartmentGlyphs ()
getNumExternalModelDefinitions ()
getNumFluxBound ()
getNumGroups ()
getNumLayouts ()
getNumMemberConstraints ()
getNumMembers ()
getNumModelDefinitions ()
getNumObjective ()
getNumPorts ()
getNumReactionGlyphs ()
getNumReplacedElements ()
getNumSpeciesGlyphs ()
getNumSubmodels ()
getNumTextGlyphs ()
getObjectiveCount ()
getPackageName ()
getPackageNamespaces ()
getPort
  type (int) in org.sbml.jsbml.ext.comp.CompModelPlugin
  type (String) in org.sbml.jsbml.ext.comp.CompModelPlugin
getProcess ()
getReplacedElement
  type (int) in org.sbml.jsbml.ext.comp.CompSBasePlugin
  type (String) in org.sbml.jsbml.ext.comp.CompSBasePlugin
getSideProduct ()
getSideSubstrate ()
getSpatialDimensions ()
getSpeciesReferenceGlyph (String)
getSubmodel
  type (int) in org.sbml.jsbml.ext.comp.CompModelPlugin
  type (String) in org.sbml.jsbml.ext.comp.CompModelPlugin
getType ()
getVariable ()
getVariableInstance ()

I A C E F G L M O R S T U V X Y Z TOP
initDefaults (int, int, boolean)
isActive ()
isAssociation (int)
isDissociation (int)
isPackageEnabledOrDisabled (String)
isProcess (int)
isRequired ()
isSetBoundaryMaximum ()
isSetBoundaryMinimum ()
isSetComplementA ()
isSetComplementB ()
isSetCompression ()
isSetCoordinate ()
isSetCoordinateReference1 ()
isSetCoordinateReference2 ()
isSetData ()
isSetDiffusionKind ()
isSetDomainType ()
isSetInterpolation ()
isSetIsActive ()
isSetListOfSampledFields ()
isSetSpatialDimensions ()
isSetSpatialRef ()
isSetType ()
isSetVariable ()
isVector ()

L A C E F G I M O R S T U V X Y Z TOP
lambdaBody (List<ASTNode>)
logicalOperation (String, List<ASTNode>)

M A C E F G I L O R S T U V X Y Z TOP
main (String[])
metaIds ()

O A C E F G I L M R S T U V X Y Z TOP
of (Comparable<? super L>, Comparable<? super V>)

R A C E F G I L M O S T U V X Y Z TOP
register
  type (SBase) in org.sbml.jsbml.KineticLaw
  type (SBase) in org.sbml.jsbml.Model
  type (SBase) in org.sbml.jsbml.ext.comp.CompModelPlugin
  type (SBase) in org.sbml.jsbml.ext.spatial.SpatialModelPlugin
relation (ASTNode, String, ASTNode)
removeAdjacentDomain (String)
removeAllTreeNodeChangeListeners
  type (boolean) in org.sbml.jsbml.AbstractTreeNode
  type (boolean) in org.sbml.jsbml.util.TreeNodeWithChangeSupport
removeAnalyticVolume (String)
removeBasePoint1 ()
removeBasePoint2 ()
removeCompartmentGlyph
  type (CompartmentGlyph) in org.sbml.jsbml.ext.layout.Layout
  type (int) in org.sbml.jsbml.ext.layout.Layout
  type (String) in org.sbml.jsbml.ext.layout.Layout
removeCoordinateComponent (String)
removeCSGNode (String)
removeCVTerm
  type (CVTerm) in org.sbml.jsbml.AbstractSBase
  type (int) in org.sbml.jsbml.AbstractSBase
  type (CVTerm) in org.sbml.jsbml.Annotation
  type (int) in org.sbml.jsbml.Annotation
  type (CVTerm) in org.sbml.jsbml.SBase
  type (int) in org.sbml.jsbml.SBase
removeDomain (String)
removeDomainType (String)
removeEnd ()
removeEventAssignment (EventAssignment)
removeGeneralGlyph
  type (int) in org.sbml.jsbml.ext.layout.GeneralGlyph
  type (GraphicalObject) in org.sbml.jsbml.ext.layout.GeneralGlyph
  type (int) in org.sbml.jsbml.ext.layout.Layout
  type (String) in org.sbml.jsbml.ext.layout.Layout
  type (GeneralGlyph) in org.sbml.jsbml.ext.layout.Layout
removeGeometryDefinition (String)
removeReactionGlyph
  type (ReactionGlyph) in org.sbml.jsbml.ext.layout.Layout
  type (int) in org.sbml.jsbml.ext.layout.Layout
  type (String) in org.sbml.jsbml.ext.layout.Layout
removeSampledField
  type (SampledField) in org.sbml.jsbml.ext.spatial.Geometry
  type (int) in org.sbml.jsbml.ext.spatial.Geometry
  type (String) in org.sbml.jsbml.ext.spatial.Geometry
removeSampledVolume (String)
removeSingletons ()
removeSpeciesGlyph
  type (SpeciesGlyph) in org.sbml.jsbml.ext.layout.Layout
  type (int) in org.sbml.jsbml.ext.layout.Layout
  type (String) in org.sbml.jsbml.ext.layout.Layout
removeStart ()
removeTextGlyph
  type (TextGlyph) in org.sbml.jsbml.ext.layout.Layout
  type (int) in org.sbml.jsbml.ext.layout.Layout
  type (String) in org.sbml.jsbml.ext.layout.Layout

S A C E F G I L M O R T U V X Y Z TOP
selector (Object[])
setAreaUnits (Kind)
setBoundaryMaximum (Boundary)
setBoundaryMinimum (Boundary)
setCaseSensitive (boolean)
setComplementA (String)
setComplementB (String)
setCompression (CompressionKind)
setCoordinate (CoordinateKind)
setCoordinateReference1 (CoordinateKind)
setCoordinateReference2 (CoordinateKind)
setData
  type (String) in org.sbml.jsbml.ext.spatial.SampledField
  type (XMLNode) in org.sbml.jsbml.ext.spatial.SampledField
setDiffusionKind (DiffusionKind)
setDomainType (String)
setExtendedSBase (SBase)
setExtentUnits (Kind)
setInterpolation (InterpolationKind)
setIsActive (boolean)
setLengthUnits (Kind)
setListOfReferenceGlyph (ListOf<ReferenceGlyph>)
setListOfSampledFields (ListOf<SampledField>)
setNotesKeyToUserObject (String)
setPolygonType (PolygonKind)
setPrimitiveType (PrimitiveKind)
setSpatialDimensions (int)
setSubstanceUnits (Kind)
setTimeUnits (Kind)
setType (CoordinateKind)
setUp ()
setVariable (String)
setVolumeUnits (Kind)

T A C E F G I L M O R S U V X Y Z TOP
test_CVTerm_removeResources ()
toFormula (FormulaCompiler)

U A C E F G I L M O R S T V X Y Z TOP
unregister
  type (SBase) in org.sbml.jsbml.ext.comp.CompModelPlugin
  type (SBase) in org.sbml.jsbml.ext.spatial.SpatialModelPlugin
unregisterChild
  type (SBase) in org.sbml.jsbml.AbstractSBase
  type (SBase) in org.sbml.jsbml.SBase
unsetBoundaryMaximum ()
unsetBoundaryMinimum ()
unsetComplementA ()
unsetComplementB ()
unsetCompression ()
unsetCoordinate ()
unsetCoordinateReference1 ()
unsetCoordinateReference2 ()
unsetData ()
unsetDiffusionKind ()
unsetGraphicalObject ()
unsetInterpolation ()
unsetIsActive ()
unsetListOfSampledFields ()
unsetListOfSpeciesReferencesGlyph ()
unsetType ()

V A C E F G I L M O R S T U X Y Z TOP
valuePairOf (Comparable<? super L>, Comparable<? super V>)
vector
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.ASTNodeCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FindUnitsCompiler
  type (Object[]) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.LaTeXCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.MathMLCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.UnitsCompiler

X A C E F G I L M O R S T U V Y Z TOP
x ()

Y A C E F G I L M O R S T U V X Z TOP
y ()

Z A C E F G I L M O R S T U V X Y TOP
z ()