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Hierarchy For All Packages
Package Hierarchies:
org.sbml.jsbml
,
org.sbml.jsbml.ext
,
org.sbml.jsbml.ext.arrays
,
org.sbml.jsbml.ext.arrays.compiler
,
org.sbml.jsbml.ext.arrays.flattening
,
org.sbml.jsbml.ext.arrays.test
,
org.sbml.jsbml.ext.arrays.util
,
org.sbml.jsbml.ext.arrays.validator
,
org.sbml.jsbml.ext.arrays.validator.constraints
,
org.sbml.jsbml.ext.comp
,
org.sbml.jsbml.ext.fbc
,
org.sbml.jsbml.ext.fbc.test
,
org.sbml.jsbml.ext.groups
,
org.sbml.jsbml.ext.groups.test
,
org.sbml.jsbml.ext.layout
,
org.sbml.jsbml.ext.layout.test
,
org.sbml.jsbml.ext.multi
,
org.sbml.jsbml.ext.qual
,
org.sbml.jsbml.ext.qual.test
,
org.sbml.jsbml.ext.render
,
org.sbml.jsbml.ext.render.test
,
org.sbml.jsbml.ext.req
,
org.sbml.jsbml.ext.spatial
,
org.sbml.jsbml.math.test
,
org.sbml.jsbml.resources
,
org.sbml.jsbml.test
,
org.sbml.jsbml.test.sbml
,
org.sbml.jsbml.text.parser
,
org.sbml.jsbml.util
,
org.sbml.jsbml.util.compilers
,
org.sbml.jsbml.util.filters
,
org.sbml.jsbml.validator
,
org.sbml.jsbml.xml
,
org.sbml.jsbml.xml.parsers
,
org.sbml.jsbml.xml.stax
,
org.sbml.jsbml.xml.test
,
org.sbml.jsbml.xml.xstream.converter
Class Hierarchy
java.lang.Object
org.sbml.jsbml.xml.parsers.
AbstractReaderWriter
(implements org.sbml.jsbml.xml.parsers.
ReadingParser
, org.sbml.jsbml.xml.parsers.
WritingParser
)
org.sbml.jsbml.xml.parsers.
ArraysParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
CompParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
FBCParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
GroupsParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
L3LayoutParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
MultiParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
QualParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
RenderParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
ReqParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.xml.parsers.
SpatialParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
)
org.sbml.jsbml.
AbstractTreeNode
(implements org.sbml.jsbml.util.
TreeNodeWithChangeSupport
)
org.sbml.jsbml.
AbstractSBase
(implements org.sbml.jsbml.
SBase
)
org.sbml.jsbml.
AbstractMathContainer
(implements org.sbml.jsbml.
MathContainer
)
org.sbml.jsbml.ext.spatial.
AnalyticVolume
(implements org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
)
org.sbml.jsbml.
Constraint
org.sbml.jsbml.
Delay
org.sbml.jsbml.
EventAssignment
(implements org.sbml.jsbml.
Assignment
)
org.sbml.jsbml.
FunctionDefinition
(implements org.sbml.jsbml.
CallableSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.qual.
FunctionTerm
org.sbml.jsbml.ext.arrays.
Index
org.sbml.jsbml.
InitialAssignment
(implements org.sbml.jsbml.
Assignment
)
org.sbml.jsbml.
KineticLaw
(implements org.sbml.jsbml.util.
IdManager
, org.sbml.jsbml.
SBaseWithUnit
)
org.sbml.jsbml.
Priority
org.sbml.jsbml.
Rule
org.sbml.jsbml.
AlgebraicRule
org.sbml.jsbml.
ExplicitRule
(implements org.sbml.jsbml.
Assignment
, org.sbml.jsbml.
SBaseWithUnit
)
org.sbml.jsbml.
AssignmentRule
org.sbml.jsbml.
RateRule
org.sbml.jsbml.xml.parsers.
SBMLLevel1Rule
org.sbml.jsbml.ext.multi.
SpeciesTypeInstanceChange
org.sbml.jsbml.
StoichiometryMath
org.sbml.jsbml.
Trigger
org.sbml.jsbml.
AbstractNamedSBase
(implements org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
AbstractNamedSBaseWithUnit
(implements org.sbml.jsbml.
NamedSBaseWithDerivedUnit
, org.sbml.jsbml.
SBaseWithUnit
)
org.sbml.jsbml.
Event
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
QuantityWithUnit
(implements org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
LocalParameter
org.sbml.jsbml.
Symbol
(implements org.sbml.jsbml.
Variable
)
org.sbml.jsbml.
Compartment
org.sbml.jsbml.
Parameter
org.sbml.jsbml.
Species
org.sbml.jsbml.ext.layout.
BoundingBox
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.req.
ChangedMath
org.sbml.jsbml.ext.render.
ColorDefinition
org.sbml.jsbml.
CompartmentType
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.layout.
Curve
org.sbml.jsbml.ext.arrays.
Dimension
(implements org.sbml.jsbml.
CallableSBase
)
org.sbml.jsbml.ext.layout.
Dimensions
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.comp.
ExternalModelDefinition
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.fbc.
FluxBound
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.fbc.
FluxObjective
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.render.
GradientBase
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.render.
LinearGradient
org.sbml.jsbml.ext.render.
RadialGradient
org.sbml.jsbml.ext.layout.
GraphicalObject
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.layout.
AbstractReferenceGlyph
org.sbml.jsbml.ext.layout.
CompartmentGlyph
org.sbml.jsbml.ext.layout.
GeneralGlyph
org.sbml.jsbml.ext.layout.
ReactionGlyph
org.sbml.jsbml.ext.layout.
ReferenceGlyph
org.sbml.jsbml.ext.layout.
SpeciesGlyph
org.sbml.jsbml.ext.layout.
SpeciesReferenceGlyph
org.sbml.jsbml.ext.layout.
TextGlyph
org.sbml.jsbml.ext.groups.
Group
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
InitialSpeciesInstance
org.sbml.jsbml.ext.qual.
Input
(implements org.sbml.jsbml.
CallableSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.layout.
Layout
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.groups.
Member
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.groups.
MemberConstraint
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Model
(implements org.sbml.jsbml.util.
IdManager
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.comp.
ModelDefinition
org.sbml.jsbml.ext.fbc.
Objective
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.qual.
Output
(implements org.sbml.jsbml.
CallableSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.layout.
Point
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
PossibleValue
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.qual.
QualitativeSpecies
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Reaction
(implements org.sbml.jsbml.
CallableSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
ReactionRule
org.sbml.jsbml.ext.render.
RenderInformationBase
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.render.
GlobalRenderInformation
org.sbml.jsbml.ext.render.
LocalRenderInformation
org.sbml.jsbml.ext.multi.
Selector
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SimpleSpeciesReference
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
ModifierSpeciesReference
org.sbml.jsbml.
SpeciesReference
(implements org.sbml.jsbml.
Variable
)
org.sbml.jsbml.ext.multi.
ProductSpeciesReference
org.sbml.jsbml.
SpeciesType
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
SpeciesType
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
SpeciesTypeInstance
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
SpeciesTypeRestriction
org.sbml.jsbml.ext.multi.
SpeciesTypeState
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
StateFeature
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.multi.
StateFeatureInstance
org.sbml.jsbml.ext.render.
Style
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.render.
LocalStyle
org.sbml.jsbml.ext.comp.
Submodel
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.qual.
Transition
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
UnitDefinition
org.sbml.jsbml.ext.spatial.
AbstractSpatialNamedSBase
(implements org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
)
org.sbml.jsbml.ext.spatial.
AdjacentDomains
org.sbml.jsbml.ext.spatial.
Boundary
org.sbml.jsbml.ext.spatial.
CompartmentMapping
org.sbml.jsbml.ext.spatial.
CoordinateComponent
(implements org.sbml.jsbml.
SBaseWithUnit
)
org.sbml.jsbml.ext.spatial.
CSGNode
org.sbml.jsbml.ext.spatial.
CSGPrimitive
org.sbml.jsbml.ext.spatial.
CSGPseudoPrimitive
org.sbml.jsbml.ext.spatial.
CSGSetOperator
org.sbml.jsbml.ext.spatial.
CSGTransformation
org.sbml.jsbml.ext.spatial.
CSGHomogeneousTransformation
org.sbml.jsbml.ext.spatial.
CSGRotation
org.sbml.jsbml.ext.spatial.
CSGScale
org.sbml.jsbml.ext.spatial.
CSGTranslation
org.sbml.jsbml.ext.spatial.
CSGObject
org.sbml.jsbml.ext.spatial.
Domain
org.sbml.jsbml.ext.spatial.
DomainType
org.sbml.jsbml.ext.spatial.
Geometry
org.sbml.jsbml.ext.spatial.
GeometryDefinition
org.sbml.jsbml.ext.spatial.
AnalyticGeometry
org.sbml.jsbml.ext.spatial.
CSGeometry
org.sbml.jsbml.ext.spatial.
MixedGeometry
org.sbml.jsbml.ext.spatial.
ParametricGeometry
org.sbml.jsbml.ext.spatial.
SampledFieldGeometry
org.sbml.jsbml.ext.spatial.
ParametricObject
org.sbml.jsbml.ext.spatial.
SampledField
org.sbml.jsbml.ext.spatial.
SampledVolume
org.sbml.jsbml.ext.spatial.
SpatialPoint
org.sbml.jsbml.ext.multi.
BindingSiteReference
org.sbml.jsbml.ext.multi.
Bond
org.sbml.jsbml.ext.multi.
ContainedSpeciesType
org.sbml.jsbml.ext.spatial.
CoordinateReference
org.sbml.jsbml.ext.layout.
CurveSegment
org.sbml.jsbml.ext.layout.
LineSegment
org.sbml.jsbml.ext.layout.
CubicBezier
org.sbml.jsbml.ext.render.
GradientStop
org.sbml.jsbml.ext.spatial.
ImageData
org.sbml.jsbml.ext.spatial.
InteriorPoint
org.sbml.jsbml.
ListOf
<T> (implements java.util.List<E>)
org.sbml.jsbml.ext.groups.
ListOfMemberConstraint
(implements org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.fbc.
ListOfObjectives
org.sbml.jsbml.util.
ListOfWithName
<T>
org.sbml.jsbml.ext.spatial.
OrdinalMapping
org.sbml.jsbml.ext.spatial.
ParameterType
org.sbml.jsbml.ext.spatial.
AdvectionCoefficient
org.sbml.jsbml.ext.spatial.
BoundaryCondition
org.sbml.jsbml.ext.spatial.
DiffusionCoefficient
org.sbml.jsbml.ext.spatial.
SpatialSymbolReference
org.sbml.jsbml.ext.spatial.
PolygonObject
org.sbml.jsbml.ext.render.
RenderPoint
(implements org.sbml.jsbml.ext.render.
Point3D
)
org.sbml.jsbml.ext.render.
RenderCubicBezier
org.sbml.jsbml.ext.comp.
SBaseRef
org.sbml.jsbml.ext.comp.
AbstractNamedSBaseRef
(implements org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.ext.comp.
Deletion
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.comp.
Port
org.sbml.jsbml.ext.comp.
ReplacedBy
org.sbml.jsbml.ext.comp.
ReplacedElement
org.sbml.jsbml.
SBMLDocument
org.sbml.jsbml.ext.multi.
SelectorReference
org.sbml.jsbml.ext.multi.
SpeciesTypeRestrictionReference
org.sbml.jsbml.ext.multi.
StateFeatureValue
org.sbml.jsbml.ext.render.
Transformation
org.sbml.jsbml.ext.render.
Transformation2D
org.sbml.jsbml.ext.render.
GraphicalPrimitive1D
org.sbml.jsbml.ext.render.
GraphicalPrimitive2D
org.sbml.jsbml.ext.render.
Ellipse
org.sbml.jsbml.ext.render.
LineEnding
org.sbml.jsbml.ext.render.
Polygon
org.sbml.jsbml.ext.render.
Rectangle
(implements org.sbml.jsbml.ext.render.
Point3D
)
org.sbml.jsbml.ext.render.
RenderGroup
(implements org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.render.
RenderCurve
org.sbml.jsbml.ext.render.
Text
(implements org.sbml.jsbml.ext.render.
FontRenderStyle
, org.sbml.jsbml.ext.render.
Point3D
)
org.sbml.jsbml.ext.render.
Image
org.sbml.jsbml.ext.spatial.
TransformationComponent
org.sbml.jsbml.
Unit
org.sbml.jsbml.ext.
AbstractSBasePlugin
(implements org.sbml.jsbml.ext.
SBasePlugin
)
org.sbml.jsbml.ext.render.
AbstractRenderPlugin
org.sbml.jsbml.ext.render.
RenderLayoutPlugin
org.sbml.jsbml.ext.render.
RenderListOfLayoutsPlugin
org.sbml.jsbml.ext.spatial.
AbstractSpatialSBasePlugin
org.sbml.jsbml.ext.spatial.
SpatialCompartmentPlugin
org.sbml.jsbml.ext.spatial.
SpatialModelPlugin
(implements org.sbml.jsbml.util.
IdManager
)
org.sbml.jsbml.ext.spatial.
SpatialParameterPlugin
org.sbml.jsbml.ext.spatial.
SpatialReactionPlugin
org.sbml.jsbml.ext.spatial.
SpatialSpeciesPlugin
org.sbml.jsbml.ext.arrays.
ArraysSBasePlugin
(implements org.sbml.jsbml.util.
IdManager
)
org.sbml.jsbml.ext.comp.
CompSBasePlugin
org.sbml.jsbml.ext.comp.
CompModelPlugin
(implements org.sbml.jsbml.util.
IdManager
)
org.sbml.jsbml.ext.comp.
CompSBMLDocumentPlugin
org.sbml.jsbml.ext.fbc.
FBCModelPlugin
org.sbml.jsbml.ext.fbc.
FBCSpeciesPlugin
org.sbml.jsbml.ext.groups.
GroupsModelPlugin
org.sbml.jsbml.ext.layout.
LayoutModelPlugin
org.sbml.jsbml.ext.multi.
MultiEventAssignment
org.sbml.jsbml.ext.multi.
MultiInitialAssignment
org.sbml.jsbml.ext.multi.
MultiModel
org.sbml.jsbml.ext.multi.
MultiReaction
org.sbml.jsbml.ext.multi.
MultiRule
org.sbml.jsbml.ext.multi.
MultiSpecies
org.sbml.jsbml.ext.multi.
MultiSpeciesReference
org.sbml.jsbml.ext.qual.
QualModelPlugin
org.sbml.jsbml.ext.qual.
QualitativeModel
org.sbml.jsbml.ext.req.
ReqSBasePlugin
org.sbml.jsbml.
AnnotationElement
org.sbml.jsbml.
Annotation
org.sbml.jsbml.
Creator
org.sbml.jsbml.
CVTerm
org.sbml.jsbml.
History
org.sbml.jsbml.
ASTNode
org.sbml.jsbml.util.
TreeNodeAdapter
org.sbml.jsbml.xml.
XMLToken
org.sbml.jsbml.xml.
XMLNode
org.sbml.jsbml.util.filters.
AndFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.util.filters.
OrFilter
org.sbml.jsbml.ext.arrays.test.
ArrayExtensionTest
org.sbml.jsbml.ext.arrays.compiler.
ArraysCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.ext.arrays.
ArraysConstants
org.sbml.jsbml.ext.arrays.validator.constraints.
ArraysConstraint
org.sbml.jsbml.ext.arrays.validator.constraints.
ArraysMathCheck
org.sbml.jsbml.ext.arrays.validator.constraints.
DimensionArrayDimCheck
org.sbml.jsbml.ext.arrays.validator.constraints.
DimensionSizeCheck
org.sbml.jsbml.ext.arrays.validator.constraints.
IndexArrayDimCheck
org.sbml.jsbml.ext.arrays.validator.constraints.
IndexAttributesCheck
org.sbml.jsbml.ext.arrays.validator.constraints.
SBaseWithDimensionCheck
org.sbml.jsbml.ext.arrays.flattening.
ArraysFlattening
org.sbml.jsbml.ext.arrays.test.
ArraysJUnitTests
org.sbml.jsbml.ext.arrays.util.
ArraysMath
org.sbml.jsbml.ext.arrays.validator.
ArraysMathValidator
org.sbml.jsbml.ext.arrays.test.
ArraysValidationTest
org.sbml.jsbml.ext.arrays.validator.
ArraysValidator
org.sbml.jsbml.ext.arrays.test.
ArraysWriteTest
org.sbml.jsbml.util.filters.
AssignmentVariableFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.math.test.
ASTNodeFormulaToStringTest
org.sbml.jsbml.math.test.
ASTNodeInfixParsingTest
org.sbml.jsbml.math.test.
ASTNodeTest
org.sbml.jsbml.util.compilers.
ASTNodeValue
org.sbml.jsbml.util.filters.
BoundaryConditionFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.ext.qual.test.
BuildToyModelTest
org.sbml.jsbml.xml.test.
CheckConsistencyTests
org.sbml.jsbml.ext.render.test.
ColorDefinitionTest
org.sbml.jsbml.ext.comp.
CompConstants
org.sbml.jsbml.ext.arrays.test.
CompilerTest
org.sbml.jsbml.ext.render.test.
CurveTest
org.sbml.jsbml.util.filters.
CVTermFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.xml.test.
CVTermTests
org.sbml.jsbml.xml.stax.
DateProcessor
org.sbml.jsbml.util.
Detail
org.sbml.jsbml.ext.arrays.validator.
DimensionValidator
org.sbml.jsbml.ext.render.test.
EllipseTest
java.util.EventObject (implements java.io.Serializable)
java.beans.PropertyChangeEvent
org.sbml.jsbml.ext.qual.
QualConstants
org.sbml.jsbml.util.
TreeNodeChangeEvent
org.sbml.jsbml.util.
TreeNodeRemovedEvent
org.sbml.jsbml.ext.arrays.validator.
ExtendedSBaseValidator
org.sbml.jsbml.ext.fbc.
FBCConstants
org.sbml.jsbml.ext.fbc.test.
FBCWritingTest
org.sbml.jsbml.util.compilers.
FindUnitsCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.ext.arrays.test.
FlatteningTest
org.sbml.jsbml.text.parser.
FormulaParser
(implements org.sbml.jsbml.text.parser.
FormulaParserConstants
, org.sbml.jsbml.text.parser.
IFormulaParser
)
org.sbml.jsbml.text.parser.
FormulaParser.JJCalls
org.sbml.jsbml.text.parser.
FormulaParserLL3
(implements org.sbml.jsbml.text.parser.
FormulaParserLL3Constants
, org.sbml.jsbml.text.parser.
IFormulaParser
)
org.sbml.jsbml.text.parser.
FormulaParserLL3.JJCalls
org.sbml.jsbml.text.parser.
FormulaParserLL3TokenManager
(implements org.sbml.jsbml.text.parser.
FormulaParserLL3Constants
)
org.sbml.jsbml.text.parser.
FormulaParserTokenManager
(implements org.sbml.jsbml.text.parser.
FormulaParserConstants
)
org.sbml.jsbml.xml.test.
GetNotesStringTests
org.sbml.jsbml.ext.render.test.
GraphicalPrimitive1DTest
org.sbml.jsbml.ext.render.test.
GraphicalPrimitive2DTest
org.sbml.jsbml.ext.groups.
GroupsConstants
org.sbml.jsbml.ext.render.test.
GroupTest
org.sbml.jsbml.test.
HashCodeTest
org.sbml.jsbml.util.filters.
IdenticalUnitDefinitionFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.test.
IdRegistrationTest
org.sbml.jsbml.ext.render.test.
ImageTest
org.sbml.jsbml.ext.arrays.validator.
IndexValidator
org.sbml.jsbml.util.
JAXPFacade
(implements org.sbml.jsbml.util.
DocumentFactory
, org.sbml.jsbml.util.
NodeWriter
, org.sbml.jsbml.util.
SAX2Parser
)
org.sbml.jsbml.
JSBML
org.sbml.jsbml.ext.layout.
LayoutConstants
org.sbml.jsbml.ext.layout.test.
LayoutExtentionTest
org.sbml.jsbml.ext.layout.test.
LayoutJUnitTests
org.sbml.jsbml.xml.parsers.
LayoutParser
(implements org.sbml.jsbml.xml.parsers.
PackageParser
, org.sbml.jsbml.xml.parsers.
ReadingParser
, org.sbml.jsbml.xml.parsers.
WritingParser
)
org.sbml.jsbml.ext.layout.test.
LayoutTest
org.sbml.jsbml.xml.test.
LibsbmlCompatibilityTests
org.sbml.jsbml.ext.render.test.
LinearGradientTest
org.sbml.jsbml.util.compilers.
MathMLCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.util.compilers.
HTMLFormula
org.sbml.jsbml.xml.parsers.
MathMLParser
(implements org.sbml.jsbml.xml.parsers.
ReadingParser
, org.sbml.jsbml.xml.parsers.
WritingParser
)
org.sbml.jsbml.xml.parsers.
MathMLStaxParser
(implements org.sbml.jsbml.xml.parsers.
ReadingParser
)
org.sbml.jsbml.util.compilers.
MathMLXMLStreamCompiler
org.sbml.jsbml.util.
Maths
org.sbml.jsbml.ext.arrays.test.
MathTest
org.sbml.jsbml.util.
Message
org.sbml.jsbml.xml.xstream.converter.
MessageConverter
org.sbml.jsbml.util.
ModelBuilder
org.sbml.jsbml.ext.multi.
MultiConstants
org.sbml.jsbml.validator.
MultipartPost
org.sbml.jsbml.util.filters.
NameFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.ext.layout.
NamedSBaseReferenceFilter
org.sbml.jsbml.util.filters.
SpeciesReferenceFilter
org.sbml.jsbml.util.
Option
org.sbml.jsbml.validator.
OverdeterminationValidator
org.sbml.jsbml.validator.
OverdeterminationValidator.InnerNode
<T> (implements org.sbml.jsbml.validator.
OverdeterminationValidator.Node
<S>)
org.sbml.jsbml.validator.
OverdeterminationValidator.StartNode
<T> (implements org.sbml.jsbml.validator.
OverdeterminationValidator.Node
<S>)
org.sbml.jsbml.validator.
OverdeterminationValidator.TerminalNode
<T> (implements org.sbml.jsbml.validator.
OverdeterminationValidator.Node
<S>)
org.sbml.jsbml.util.
Pair
<L,V> (implements java.lang.Cloneable, java.util.Map.Entry<K,V>, java.io.Serializable)
org.sbml.jsbml.util.
ValuePair
<L,V> (implements java.lang.Comparable<T>)
org.sbml.jsbml.xml.parsers.
ParserManager
org.sbml.jsbml.test.
PerformanceTest
org.sbml.jsbml.test.
PerformanceTestPureStax
org.sbml.jsbml.ext.render.test.
PolygonTest
org.sbml.jsbml.ext.qual.test.
QualExample
org.sbml.jsbml.ext.render.test.
RectangleTest
org.sbml.jsbml.test.
RemoveFromModelTest
org.sbml.jsbml.test.
RemoveFromParentTest
org.sbml.jsbml.ext.render.
RenderConstants
org.sbml.jsbml.ext.render.test.
RenderCubicBezierTest
org.sbml.jsbml.ext.render.test.
RenderJUnitTests
org.sbml.jsbml.ext.render.test.
RenderWriteTest
org.sbml.jsbml.ext.req.
ReqConstants
org.sbml.jsbml.resources.
Resource
java.util.ResourceBundle
org.sbml.jsbml.util.
XMLResourceBundleControl.XMLResourceBundle
java.util.ResourceBundle.Control
org.sbml.jsbml.util.
XMLResourceBundleControl
org.sbml.jsbml.util.
ResourceManager
org.sbml.jsbml.xml.test.
SBML_L1VxTests
org.sbml.jsbml.xml.test.
SBML_L2V1Test
org.sbml.jsbml.xml.parsers.
SBMLCoreParser
(implements org.sbml.jsbml.xml.parsers.
ReadingParser
, org.sbml.jsbml.xml.parsers.
WritingParser
)
org.sbml.jsbml.xml.xstream.converter.
SBMLErrorConverter
org.sbml.jsbml.
SBMLErrorLog
org.sbml.jsbml.xml.stax.
SBMLObjectForXML
org.sbml.jsbml.xml.parsers.
SBMLRDFAnnotationParser
(implements org.sbml.jsbml.xml.parsers.
AnnotationReader
, org.sbml.jsbml.xml.parsers.
AnnotationWriter
)
org.sbml.jsbml.
SBMLReader
(implements java.lang.Cloneable, java.io.Serializable)
org.sbml.jsbml.xml.stax.
SBMLReader
org.sbml.jsbml.util.
SBMLtools
org.sbml.jsbml.validator.
SBMLValidator
org.sbml.jsbml.
SBMLWriter
(implements java.lang.Cloneable, java.io.Serializable)
org.sbml.jsbml.xml.stax.
SBMLWriter
org.sbml.jsbml.
SBO
org.sbml.jsbml.
SBO.Term
(implements java.lang.Cloneable, java.lang.Comparable<T>, java.io.Serializable)
org.sbml.jsbml.
SBO.Triple
(implements java.lang.Cloneable, java.lang.Comparable<T>, java.io.Serializable)
org.sbml.jsbml.util.filters.
SBOFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.text.parser.
SimpleCharStream
org.sbml.jsbml.util.
SimpleTreeNodeChangeListener
(implements org.sbml.jsbml.util.
TreeNodeChangeListener
)
org.sbml.jsbml.ext.spatial.
SpatialConstants
org.sbml.jsbml.ext.spatial.
SpatialTest
org.sbml.jsbml.ext.layout.test.
SpeciesReferenceGlyphTest
org.sbml.jsbml.ext.arrays.compiler.
StaticallyComputableCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.util.
StringTools
org.sbml.jsbml.util.compilers.
FormulaCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.util.compilers.
FormulaCompilerLibSBML
org.sbml.jsbml.util.compilers.
FormulaCompilerNoPiecewise
org.sbml.jsbml.util.compilers.
LibSBMLFormulaCompiler
org.sbml.jsbml.util.compilers.
LaTeXCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.util.
SubModel
org.sbml.jsbml.xml.test.
TestAbstractNamedSBaseWithUnits
org.sbml.jsbml.test.sbml.
TestASTNode
org.sbml.jsbml.test.sbml.
TestCompartment
org.sbml.jsbml.test.sbml.
TestCVTerms
org.sbml.jsbml.test.sbml.
TestEvent
org.sbml.jsbml.test.sbml.
TestIncompatibilities
org.sbml.jsbml.math.test.
TestInfixOperatorPrecedence
org.sbml.jsbml.ext.groups.test.
TestL3groups
org.sbml.jsbml.ext.layout.test.
TestL3Layout
org.sbml.jsbml.test.sbml.
TestL3Parameter
org.sbml.jsbml.test.sbml.
TestModel
org.sbml.jsbml.test.sbml.
TestParameter
org.sbml.jsbml.test.sbml.
TestReaction
org.sbml.jsbml.test.sbml.
TestReadFromFile1
org.sbml.jsbml.test.sbml.
TestReadFromFile5
org.sbml.jsbml.xml.test.
Tests
org.sbml.jsbml.test.sbml.
TestSBase
org.sbml.jsbml.test.sbml.
TestSpecies
org.sbml.jsbml.ext.layout.test.
TestSpeciesReferenceGlyphCurve
org.sbml.jsbml.test.sbml.
TestUnitSimplification
org.sbml.jsbml.ext.layout.test.
TextGlyphTest
org.sbml.jsbml.ext.render.test.
TextTest
java.lang.Throwable (implements java.io.Serializable)
java.lang.Error
org.sbml.jsbml.text.parser.
FormulaParser.LookaheadSuccess
org.sbml.jsbml.text.parser.
FormulaParserLL3.LookaheadSuccess
org.sbml.jsbml.util.
NotImplementedException
org.sbml.jsbml.text.parser.
TokenMgrError
java.lang.Exception
org.sbml.jsbml.validator.
ModelOverdeterminedException
org.sbml.jsbml.text.parser.
ParseException
java.lang.RuntimeException
org.sbml.jsbml.xml.
XMLException
org.sbml.jsbml.
SBMLError
org.sbml.jsbml.
LevelVersionError
org.sbml.jsbml.
PropertyException
org.sbml.jsbml.
PropertyNotAvailableException
org.sbml.jsbml.
PropertyUndefinedError
org.sbml.jsbml.
SBMLTypeUndefinedException
org.sbml.jsbml.
SBMLException
org.sbml.jsbml.
IdentifierException
org.sbml.jsbml.util.compilers.
UnitException
org.sbml.jsbml.text.parser.
Token
(implements java.io.Serializable)
org.sbml.jsbml.test.
TreeSearchTest
org.sbml.jsbml.util.compilers.
UnitsCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.xml.test.
UnregisterTests
org.sbml.jsbml.validator.
Validator
org.sbml.jsbml.ext.arrays.compiler.
VectorCompiler
(implements org.sbml.jsbml.util.compilers.
ASTNodeCompiler
)
org.sbml.jsbml.xml.
XMLAttributes
org.sbml.jsbml.xml.stax.
XMLLogger
org.sbml.jsbml.xml.
XMLNamespaces
org.sbml.jsbml.util.filters.
XMLNodeFilter
(implements org.sbml.jsbml.util.filters.
Filter
)
org.sbml.jsbml.xml.parsers.
XMLNodeReader
(implements org.sbml.jsbml.xml.parsers.
ReadingParser
)
org.sbml.jsbml.xml.parsers.
XMLNodeWriter
org.sbml.jsbml.ext.render.
XMLTools
org.sbml.jsbml.xml.
XMLTriple
Interface Hierarchy
org.sbml.jsbml.xml.parsers.
AnnotationReader
org.sbml.jsbml.xml.parsers.
AnnotationWriter
org.sbml.jsbml.util.compilers.
ASTNodeCompiler
java.lang.Cloneable
org.sbml.jsbml.util.
TreeNodeWithChangeSupport
(also extends java.io.Serializable, javax.swing.tree.TreeNode)
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBase
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBase
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBase
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithDerivedUnit
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.
SBasePlugin
org.sbml.jsbml.
SBaseWithDerivedUnit
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.util.
DocumentFactory
java.util.EventListener
org.sbml.jsbml.util.
ProgressListener
java.beans.PropertyChangeListener
org.sbml.jsbml.util.
TreeNodeChangeListener
org.sbml.jsbml.util.filters.
Filter
org.sbml.jsbml.ext.render.
FontRenderStyle
org.sbml.jsbml.text.parser.
FormulaParserConstants
org.sbml.jsbml.text.parser.
FormulaParserLL3Constants
org.sbml.jsbml.util.
IdManager
org.sbml.jsbml.text.parser.
IFormulaParser
org.sbml.jsbml.util.
NodeWriter
org.sbml.jsbml.validator.
OverdeterminationValidator.Node
<S>
org.sbml.jsbml.xml.parsers.
PackageParser
org.sbml.jsbml.ext.render.
Point3D
org.sbml.jsbml.xml.parsers.
ReadingParser
org.sbml.jsbml.util.
SAX2Parser
org.sbml.jsbml.
SBMLInputConverter
<T>
org.sbml.jsbml.
SBMLOutputConverter
<T>
java.io.Serializable
org.sbml.jsbml.util.
TreeNodeWithChangeSupport
(also extends java.lang.Cloneable, javax.swing.tree.TreeNode)
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBase
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBase
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBase
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithDerivedUnit
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.
SBasePlugin
org.sbml.jsbml.
SBaseWithDerivedUnit
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
javax.swing.tree.TreeNode
org.sbml.jsbml.util.
TreeNodeWithChangeSupport
(also extends java.lang.Cloneable, java.io.Serializable)
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBase
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBase
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBase
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
, org.sbml.jsbml.
SBaseWithDerivedUnit
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithDerivedUnit
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.ext.
SBasePlugin
org.sbml.jsbml.
SBaseWithDerivedUnit
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
MathContainer
org.sbml.jsbml.
Assignment
org.sbml.jsbml.
NamedSBaseWithDerivedUnit
(also extends org.sbml.jsbml.
NamedSBase
)
org.sbml.jsbml.
CallableSBase
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
Quantity
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.
SBaseWithUnit
org.sbml.jsbml.ext.spatial.
SpatialNamedSBase
org.sbml.jsbml.
UniqueNamedSBase
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
)
org.sbml.jsbml.
Variable
(also extends org.sbml.jsbml.
Quantity
, org.sbml.jsbml.
UniqueNamedSBase
)
org.sbml.jsbml.xml.parsers.
WritingParser
Enum Hierarchy
java.lang.Object
java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
org.sbml.jsbml.
AbstractSBase.NOTES_TYPE
org.sbml.jsbml.
ASTNode.Type
org.sbml.jsbml.
SBMLException.Category
org.sbml.jsbml.
SBMLException.Code
org.sbml.jsbml.
SBMLException.Type
org.sbml.jsbml.
CVTerm.Qualifier
org.sbml.jsbml.
CVTerm.Type
org.sbml.jsbml.
ListOf.Type
org.sbml.jsbml.
SBMLError.SEVERITY
org.sbml.jsbml.
Unit.Kind
org.sbml.jsbml.ext.fbc.
FBCList
org.sbml.jsbml.ext.fbc.
FluxBound.Operation
org.sbml.jsbml.ext.fbc.
Objective.Type
org.sbml.jsbml.ext.groups.
GroupKind
org.sbml.jsbml.ext.layout.
SpeciesReferenceRole
org.sbml.jsbml.ext.layout.
CurveSegment.Type
org.sbml.jsbml.ext.multi.
Bond.BOND_OCCURRENCE_TYPE
org.sbml.jsbml.ext.qual.
OutputTransitionEffect
org.sbml.jsbml.ext.qual.
InputTransitionEffect
org.sbml.jsbml.ext.qual.
Sign
org.sbml.jsbml.ext.qual.
QualList
org.sbml.jsbml.ext.render.
GraphicalPrimitive2D.FillRule
org.sbml.jsbml.ext.render.
FontFamily
org.sbml.jsbml.ext.render.
VTextAnchor
org.sbml.jsbml.ext.render.
GradientBase.Spread
org.sbml.jsbml.ext.render.
TextAnchor
org.sbml.jsbml.ext.spatial.
AnalyticVolume.FunctionKind
org.sbml.jsbml.ext.spatial.
DiffusionCoefficient.DiffusionKind
org.sbml.jsbml.ext.spatial.
ParametricObject.PolygonKind
org.sbml.jsbml.ext.spatial.
Geometry.GeometryKind
org.sbml.jsbml.ext.spatial.
CSGSetOperator.SetOperation
org.sbml.jsbml.ext.spatial.
SampledField.DataKind
org.sbml.jsbml.ext.spatial.
SampledField.CompressionKind
org.sbml.jsbml.ext.spatial.
SampledField.InterpolationKind
org.sbml.jsbml.ext.spatial.
BoundaryCondition.BoundaryKind
org.sbml.jsbml.ext.spatial.
CoordinateKind
org.sbml.jsbml.ext.spatial.
CSGPrimitive.PrimitiveKind
org.sbml.jsbml.validator.
SBMLValidator.CHECK_CATEGORY
org.sbml.jsbml.xml.parsers.
LayoutParser.LayoutList
org.sbml.jsbml.xml.parsers.
SBMLRDFAnnotationParser.NODE_COLOR
Overview
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