Inheritance diagram for libsbml.SBMLError:

Detailed Description

An error, warning or other diagnostic.

This class of objects is defined by libSBML only and has no direct equivalent in terms of SBML components. This class is not prescribed by the SBML specifications, although it is used to implement features defined in SBML.

When a libSBML operation on SBML content results in an error, or when there is something wrong with the SBML content, the problems are reported as SBMLError objects. These are generally stored in an SBMLErrorLog object; this log object, in turn, is kept in the SBMLDocument object containing the SBML content. Applications can obtain the list of logged errors using SBMLDocument.getErrorLog() and then use the methods provided by SBMLErrorLog to access individual SBMLError objects. (Note that despite the word 'error' in the name, SBMLError objects are used to represent not only 'true' errors, but also warnings and some informational diagnostics. The name is a historical hold-over from early versions of libSBML, in which the object really was only used to report errors.)

Each SBMLError object instance has an identification number that identifies the nature of the problem. This 'error id' number will be up to five digits long, and it will come from one of two sets of static integer constants defined in the interface class libsbml: either the SBML error identifiers (described below) or the XML error identifiers (described in the documentation for the class XMLError). The former set of constants includes all the SBML validation rule numbers listed in the appendices of the SBML specification documents, as well as some additional libSBML-specific error codes.

Error codes are useful mainly for software. For human readers, SBMLError also includes text messages that describe the nature of a given problem. The messages can be accessed using SBMLError.getShortMessage() and SBMLError.getMessage(). The former provides a brief one-line description of the issue, while SBMLError.getMessage() provides a more detailed text, including (if appropriate) references to sections of the SBML specifications where relevant topics are discussed. These text strings are suitable for displaying to human users.

An SBMLError object also contains a category code; its value may be retrieved using the method SBMLError.getCategory(). Category values are drawn from a set of static integer constants defined in libsbml and having names beginning with the characters LIBSBML_CAT_. The list of possible codes is described in a separate section below. Categories are used to partition errors into distinct conceptual groups. This is principally used by the libSBML validation system to group classes of validation checks. For example, LIBSBML_CAT_IDENTIFIER_CONSISTENCY is the category for tests that check identifier consistency; LIBSBML_CAT_MATHML_CONSISTENCY is the category for MathML consistency checking; and so on.

In addition, SBMLError also has a severity code. Its value may be retrieved using the method SBMLError.getSeverity(). The possible severity values are the same as those reported byXMLError. Severity levels currently range from informational (LIBSBML_SEV_INFO) to fatal errors (LIBSBML_SEV_FATAL). They can be used by an application to evaluate how serious a given problem is.

SBMLError also tracks the Level 3 package extension, if any, was responsible for a given warning or error. Each diagnostic code logged by an libSBML extension for SBML Level 3 packages includes a record of the package that logged it. It can be retrieved using SBMLError.getPackage(). The information is a simple text string; the string will be the nickname of the package, such as 'comp' for the Hierarchical Model Composition package, 'fbc' for the Flux Balance Constraints package, and so on. If the value returned by SBMLError.getPackage() is an empty string or has the value 'core', then the error came from libSBML core.

Finally, SBMLError records the line and column near where the problem occurred in the SBML content. The values may be retrieved using the methods SBMLError.getLine() and SBMLError.getColumn(). We say 'near', because a lot of factors affect how accurate the line/column information ultimately is. For example, different XML parsers have different conventions for which line and column number they report for a particular problem (which makes a difference when a problem involves an opening XML tag on one line and a closing tag on another line). In some situations, some parsers report invalid line and/or column numbers altogether. If this occurs, libSBML sets the line and/or column number in the SBMLError object to the the value of the maximum unsigned long integer representable on the platform where libSBML is running. (This is equal to the constant named ULONG_MAX in C and C++.) The probability that a true line or column number in an SBML model would equal this value is vanishingly small; thus, if an application encounters these values in an XMLError object, it can assume no valid line/column number could be provided by libSBML in that situation.

Error codes associated with SBMLError objects

The error and warning codes returned by libSBML are listed in the table below. The method SBMLError.getErrorId() returns the error code of a given SBMLError object instance. In the libSBML Python language interface, these error identifiers are currently implemented as static integer constants defined in the interface class libsbml.

In this table, the right-hand columns titled 'L1V1', 'L1V2', etc. refer to Levels and Versions of the SBML specifications, and the entries in each column refer to whether the severity of the condition in that particular Level+Version of SBML. The codes stand for the following:

	= Not applicable
	= Warning
	= Error
	= Fatal

The text shown in the 'Meaning' is the text returned by the SBMLError.getShortMessage() method on a given SBMLError object. A longer and (hopefully) clearer explanation of the issue is returned by SBMLError.getMessage().

The error codes come from different lists depending on whether they're from libSBML core or from an SBML Level 3 package extension. However, in the language interfaces other than C++, all libSBML error codes are ultimately represented as integer constants rather than separate enumerations lists, and they are all stored in a single interface class. Codes from different libSBML extensions have names that begin with the package's nickname, such as Qual for the Qualitative Models package, Layout for the Layout package, and so on. If the name of a code does not begin with one of the package nicknames (Layout, Fbc, Comp, Qual, etc.), then it is a code from libSBML core.

Enumerator	Meaning	L1 V1	L1 V2	L2 V1	L2 V2	L2 V3	L2 V4	L3 V1	L3 V2
XMLUnknownError	Unknown error
XMLOutOfMemory	Out of memory
XMLFileUnreadable	File unreadable
XMLFileUnwritable	File unwritable
XMLFileOperationError	File operation error
XMLNetworkAccessError	Network access error
InternalXMLParserError	Internal XML parser error
UnrecognizedXMLParserCode	Unrecognized XML parser code
XMLTranscoderError	Transcoder error
MissingXMLDecl	Missing XML declaration
MissingXMLEncoding	Missing XML encoding attribute
BadXMLDecl	Bad XML declaration
BadXMLDOCTYPE	Bad XML DOCTYPE
InvalidCharInXML	Invalid character
BadlyFormedXML	Badly formed XML
UnclosedXMLToken	Unclosed token
InvalidXMLConstruct	Invalid XML construct
XMLTagMismatch	XML tag mismatch
DuplicateXMLAttribute	Duplicate attribute
UndefinedXMLEntity	Undefined XML entity
BadProcessingInstruction	Bad XML processing instruction
BadXMLPrefix	Bad XML prefix
BadXMLPrefixValue	Bad XML prefix value
MissingXMLRequiredAttribute	Missing required attribute
XMLAttributeTypeMismatch	Attribute type mismatch
XMLBadUTF8Content	Bad UTF8 content
MissingXMLAttributeValue	Missing attribute value
BadXMLAttributeValue	Bad attribute value
BadXMLAttribute	Bad XML attribute
UnrecognizedXMLElement	Unrecognized XML element
BadXMLComment	Bad XML comment
BadXMLDeclLocation	Bad XML declaration location
XMLUnexpectedEOF	Unexpected EOF
BadXMLIDValue	Bad XML ID value
BadXMLIDRef	Bad XML IDREF
UninterpretableXMLContent	Uninterpretable XML content
BadXMLDocumentStructure	Bad XML document structure
InvalidAfterXMLContent	Invalid content after XML content
XMLExpectedQuotedString	Expected quoted string
XMLEmptyValueNotPermitted	Empty value not permitted
XMLBadNumber	Bad number
XMLBadColon	Colon character not permitted
MissingXMLElements	Missing XML elements
XMLContentEmpty	Empty XML content
UnknownError	Encountered unknown internal libSBML error
NotUTF8	File does not use UTF-8 encoding
UnrecognizedElement	Encountered unrecognized element
NotSchemaConformant	Document does not conform to the SBML XML schema
L3NotSchemaConformant	Document is not well-formed XML
InvalidMathElement	Invalid MathML
DisallowedMathMLSymbol	Disallowed MathML symbol found
DisallowedMathMLEncodingUse	Use of the MathML 'encoding' attribute is not allowed on this element
DisallowedDefinitionURLUse	Use of the MathML 'definitionURL' attribute is not allowed on this element
BadCsymbolDefinitionURLValue	Invalid `<csymbol>` 'definitionURL' attribute value
DisallowedMathTypeAttributeUse	Use of the MathML 'type' attribute is not allowed on this element
DisallowedMathTypeAttributeValue	Disallowed MathML 'type' attribute value
LambdaOnlyAllowedInFunctionDef	Use of `<lambda>` not permitted outside of FunctionDefinition objects
BooleanOpsNeedBooleanArgs	Non-Boolean argument given to Boolean operator
NumericOpsNeedNumericArgs	Non-numerical argument given to numerical operator
ArgsToEqNeedSameType	Arguments to `<eq>` and `<neq>` must have the same data types
PiecewiseNeedsConsistentTypes	Terms in a `<piecewise>` expression must have consistent data types
PieceNeedsBoolean	The second argument of a `<piece>` expression must yield a Boolean value
ApplyCiMustBeUserFunction	A `<ci>` element in this context must refer to a function definition
ApplyCiMustBeModelComponent	A `<ci>` element in this context must refer to a model component
KineticLawParametersAreLocalOnly	Cannot use a KineticLaw local parameter outside of its local scope
MathResultMustBeNumeric	A formula's result in this context must be a numerical value
OpsNeedCorrectNumberOfArgs	Incorrect number of arguments given to MathML operator
InvalidNoArgsPassedToFunctionDef	Incorrect number of arguments given to function invocation
DisallowedMathUnitsUse	Attribute 'units' is only permitted on `<cn>` elements
InvalidUnitsValue	Invalid value given for the 'units' attribute
CiCannotReference0DCompartment	A `<ci>` element cannot reference a 0D compartment
RateOfTargetMustBeCi	A 'rateOf' `<csymbol>` must target only a single `<ci>` element
RateOfTargetCannotBeAssigned	The target of a 'rateOf' `<csymbol>` cannot be assigned
RateOfSpeciesTargetCompartmentNot	Compartments of non-substance `<species>` referenced by 'rateOf' must not vary
DuplicateComponentId	Duplicate 'id' attribute value
DuplicateUnitDefinitionId	Duplicate unit definition 'id' attribute value
DuplicateLocalParameterId	Duplicate local parameter 'id' attribute value
MultipleAssignmentOrRateRules	Multiple rules for the same variable are not allowed
MultipleEventAssignmentsForId	Multiple event assignments for the same variable are not allowed
EventAndAssignmentRuleForId	An event assignment and an assignment rule must not have the same value for 'variable'
DuplicateMetaId	Duplicate 'metaid' attribute value
InvalidSBOTermSyntax	Invalid syntax for an 'sboTerm' attribute value
InvalidMetaidSyntax	Invalid syntax for a 'metaid' attribute value
InvalidIdSyntax	Invalid syntax for an 'id' attribute value
InvalidUnitIdSyntax	Invalid syntax for the identifier of a unit
InvalidNameSyntax	Invalid syntax for a 'name' attribute value
DanglingUnitReference	Dangling reference to a unit.
MissingAnnotationNamespace	Missing declaration of the XML namespace for the annotation
DuplicateAnnotationNamespaces	Multiple annotations using the same XML namespace
SBMLNamespaceInAnnotation	The SBML XML namespace cannot be used in an Annotation object
MultipleAnnotations	Only one Annotation object is permitted under a given SBML object
InconsistentArgUnits	The units of the function call's arguments are not consistent with its definition
InconsistentKineticLawUnitsL3	The kinetic law's units are inconsistent with those of other kinetic laws in the model
AssignRuleCompartmentMismatch	Mismatched units in assignment rule for compartment
AssignRuleSpeciesMismatch	Mismatched units in assignment rule for species
AssignRuleParameterMismatch	Mismatched units in assignment rule for parameter
AssignRuleStoichiometryMismatch	Mismatched units in assignment rule for stoichiometry
InitAssignCompartmenMismatch	Mismatched units in initial assignment to compartment
InitAssignSpeciesMismatch	Mismatched units in initial assignment to species
InitAssignParameterMismatch	Mismatched units in initial assignment to parameter
InitAssignStoichiometryMismatch	Mismatched units in initial assignment to stoichiometry
RateRuleCompartmentMismatch	Mismatched units in rate rule for compartment
RateRuleSpeciesMismatch	Mismatched units in rate rule for species
RateRuleParameterMismatch	Mismatched units in rate rule for parameter
RateRuleStoichiometryMismatch	Mismatched units in rate rule for stoichiometry
KineticLawNotSubstancePerTime	The units of the kinetic law are not 'substance'/'time'
SpeciesInvalidExtentUnits	The species' units are not consistent with units of extent
DelayUnitsNotTime	The units of the delay expression are not units of time
EventAssignCompartmentMismatch	Mismatched units in event assignment for compartment
EventAssignSpeciesMismatch	Mismatched units in event assignment for species
EventAssignParameterMismatch	Mismatched units in event assignment for parameter
EventAssignStoichiometryMismatch	Mismatched units in event assignment for stoichiometry
PriorityUnitsNotDimensionless	The units of a priority expression must be 'dimensionless'
OverdeterminedSystem	The model is overdetermined
InvalidModelSBOTerm	Invalid 'sboTerm' attribute value for a Model object
InvalidFunctionDefSBOTerm	Invalid 'sboTerm' attribute value for a FunctionDefinition object
InvalidParameterSBOTerm	Invalid 'sboTerm' attribute value for a Parameter object
InvalidInitAssignSBOTerm	Invalid 'sboTerm' attribute value for an InitialAssignment object
InvalidRuleSBOTerm	Invalid 'sboTerm' attribute value for a Rule object
InvalidConstraintSBOTerm	Invalid 'sboTerm' attribute value for a Constraint object
InvalidReactionSBOTerm	Invalid 'sboTerm' attribute value for a Reaction object
InvalidSpeciesReferenceSBOTerm	Invalid 'sboTerm' attribute value for a SpeciesReference object
InvalidKineticLawSBOTerm	Invalid 'sboTerm' attribute value for a KineticLaw object
InvalidEventSBOTerm	Invalid 'sboTerm' attribute value for an Event object
InvalidEventAssignmentSBOTerm	Invalid 'sboTerm' attribute value for an EventAssignment object
InvalidCompartmentSBOTerm	Invalid 'sboTerm' attribute value for a Compartment object
InvalidSpeciesSBOTerm	Invalid 'sboTerm' attribute value for a Species object
InvalidCompartmentTypeSBOTerm	Invalid 'sboTerm' attribute value for a CompartmentType object
InvalidSpeciesTypeSBOTerm	Invalid 'sboTerm' attribute value for a SpeciesType object
InvalidTriggerSBOTerm	Invalid 'sboTerm' attribute value for an Event Trigger object
InvalidDelaySBOTerm	Invalid 'sboTerm' attribute value for an Event Delay object
InvalidLocalParameterSBOTerm	Invalid 'sboTerm' attribute value for a LocalParameter object
InvalidSBMLElementSBOTerm	Invalid 'sboTerm' attribute value for the `<sbml>` element
NotesNotInXHTMLNamespace	Notes must be placed in the XHTML XML namespace
NotesContainsXMLDecl	XML declarations are not permitted in Notes objects
NotesContainsDOCTYPE	XML DOCTYPE elements are not permitted in Notes objects
InvalidNotesContent	Invalid notes content found
OnlyOneNotesElementAllowed	Only one Notes subobject is permitted on a given SBML object
InvalidNamespaceOnSBML	Invalid XML namespace for the SBML container element
MissingOrInconsistentLevel	Missing or inconsistent value for the 'level' attribute
MissingOrInconsistentVersion	Missing or inconsistent value for the 'version' attribute
PackageNSMustMatch	Inconsistent or invalid SBML Level/Version for the package namespace declaration
LevelPositiveInteger	The 'level' attribute must have a positive integer value
VersionPositiveInteger	The 'version' attribute must have a positive integer value
AllowedAttributesOnSBML	Invalid attribute found on the SBML container element
L3PackageOnLowerSBML	An L3 package ns found on the SBML container element
MissingModel	No model definition found
IncorrectOrderInModel	Incorrect ordering of components within the Model object
EmptyListElement	Empty ListOf___ object found
NeedCompartmentIfHaveSpecies	The presence of a species requires a compartment
OneOfEachListOf	Only one of each kind of ListOf___ object is allowed inside a Model object
OnlyFuncDefsInListOfFuncDefs	Only FunctionDefinition, Notes and Annotation objects are allowed in ListOfFunctionDefinitions
OnlyUnitDefsInListOfUnitDefs	Only UnitDefinition, Notes and Annotation objects are allowed in ListOfUnitDefinitions objects
OnlyCompartmentsInListOfCompartments	Only Compartment, Notes and Annotation objects are allowed in ListOfCompartments objects
OnlySpeciesInListOfSpecies	Only Species, Notes and Annotation objects are allowed in ListOfSpecies objects
OnlyParametersInListOfParameters	Only Parameter, Notes and Annotation objects are allowed in ListOfParameters objects
OnlyInitAssignsInListOfInitAssigns	Only InitialAssignment, Notes and Annotation objects are allowed in ListOfInitialAssignments objects
OnlyRulesInListOfRules	Only Rule, Notes and Annotation objects are allowed in ListOfRules objects
OnlyConstraintsInListOfConstraints	Only Constraint, Notes and Annotation objects are allowed in ListOfConstraints objects
OnlyReactionsInListOfReactions	Only Reaction, Notes and Annotation objects are allowed in ListOfReactions objects
OnlyEventsInListOfEvents	Only Event, Notes and Annotation objects are allowed in ListOfEvents objects
L3ConversionFactorOnModel	A 'conversionFactor' attribute value must reference a Parameter object
L3TimeUnitsOnModel	Invalid 'timeUnits' attribute value
L3VolumeUnitsOnModel	Invalid 'volumeUnits' attribute value
L3AreaUnitsOnModel	Invalid 'areaUnits' attribute value
L3LengthUnitsOnModel	Invalid 'lengthUnits' attribute value
L3ExtentUnitsOnModel	Invalid 'extentUnits' attribute value
AllowedAttributesOnModel	Invalid attribute found on the Model object
AllowedAttributesOnListOfFuncs	Invalid attribute found on the ListOfFunctionDefinitions object
AllowedAttributesOnListOfUnitDefs	Invalid attribute found on the ListOfUnitDefinitions object
AllowedAttributesOnListOfComps	Invalid attribute found on the ListOfCompartments object
AllowedAttributesOnListOfSpecies	Invalid attribute found on the ListOfSpecies object
AllowedAttributesOnListOfParams	Invalid attribute found on the ListOfParameters object
AllowedAttributesOnListOfInitAssign	Invalid attribute found on the ListOfInitialAssignments object
AllowedAttributesOnListOfRules	Invalid attribute found on the ListOfRules object
AllowedAttributesOnListOfConstraints	Invalid attribute found on the ListOfConstraints object
AllowedAttributesOnListOfReactions	Invalid attribute found on the ListOfReactions object
AllowedAttributesOnListOfEvents	Invalid attribute found on the ListOfEvents object
L3V2SubstanceUnitsOnModel	Invalid 'substanceUnits' attribute value
FunctionDefMathNotLambda	Invalid expression found in the function definition
InvalidApplyCiInLambda	Invalid forward reference in the MathML `<apply><ci>`...`</ci></apply>` expression
RecursiveFunctionDefinition	Recursive function definitions are not permitted
InvalidCiInLambda	Invalid `<ci>` reference found inside the `<lambda>` mathematical formula
InvalidFunctionDefReturnType	A function's return type must be either a number or a Boolean
OneMathElementPerFunc	A FunctionDefinition object may contain one `<math>` element
AllowedAttributesOnFunc	Invalid attribute found on the FunctionDefinition object
InvalidUnitDefId	Invalid 'id' attribute value for a UnitDefinition object
InvalidSubstanceRedefinition	Invalid redefinition of built-in type 'substance'
InvalidLengthRedefinition	Invalid redefinition of built-in type 'length'
InvalidAreaRedefinition	Invalid redefinition of built-in type name 'area'
InvalidTimeRedefinition	Invalid redefinition of built-in type name 'time'
InvalidVolumeRedefinition	Invalid redefinition of built-in type name 'volume'
VolumeLitreDefExponentNotOne	Must use 'exponent'=1 when defining 'volume' in terms of litres
VolumeMetreDefExponentNot3	Must use 'exponent'=3 when defining 'volume' in terms of metres
EmptyListOfUnits	An empty list of Unit objects is not permitted in a UnitDefinition object
InvalidUnitKind	Invalid value for the 'kind' attribute of a UnitDefinition object
OffsetNoLongerValid	Unit attribute 'offset' is not supported in this Level+Version of SBML
CelsiusNoLongerValid	Unit name 'Celsius' is not defined in this Level+Version of SBML
EmptyUnitListElement	A ListOfUnits object must not be empty
OneListOfUnitsPerUnitDef	At most one ListOfUnits object is allowed inside a UnitDefinition object
OnlyUnitsInListOfUnits	Only Unit, Notes and Annotation objects are allowed in ListOfUnits objects
AllowedAttributesOnUnitDefinition	Invalid attribute found on the UnitDefinition object
AllowedAttributesOnListOfUnits	Invalid attribute found on the ListOfUnits object
AllowedAttributesOnUnit	Invalid attribute found on the Unit object
ZeroDimensionalCompartmentSize	Invalid use of the 'size' attribute for a zero-dimensional compartment
ZeroDimensionalCompartmentUnits	Invalid use of the 'units' attribute for a zero-dimensional compartment
ZeroDimensionalCompartmentConst	Zero-dimensional compartments must be defined to be constant
UndefinedOutsideCompartment	Invalid value for the 'outside' attribute of a Compartment object
RecursiveCompartmentContainment	Recursive nesting of compartments via the 'outside' attribute is not permitted
ZeroDCompartmentContainment	Invalid nesting of zero-dimensional compartments
Invalid1DCompartmentUnits	Invalid value for the 'units' attribute of a one-dimensional compartment
Invalid2DCompartmentUnits	Invalid value for the 'units' attribute of a two-dimensional compartment
Invalid3DCompartmentUnits	Invalid value for the 'units' attribute of a three-dimensional compartment
InvalidCompartmentTypeRef	Invalid value for the 'compartmentType' attribute of a compartment
OneDimensionalCompartmentUnits	No units defined for 1-D compartment
TwoDimensionalCompartmentUnits	No units defined for 2-D compartment
ThreeDimensionalCompartmentUnits	No units defined for 3-D Compartment object
AllowedAttributesOnCompartment	Invalid attribute found on Compartment object
NoUnitsOnCompartment	No units defined for Compartment object
InvalidSpeciesCompartmentRef	Invalid value found for Species 'compartment' attribute
HasOnlySubsNoSpatialUnits	Attribute 'spatialSizeUnits' must not be set if 'hasOnlySubstanceUnits'='true'
NoSpatialUnitsInZeroD	Attribute 'spatialSizeUnits' must not be set if the compartment is zero-dimensional
NoConcentrationInZeroD	Attribute 'initialConcentration' must not be set if the compartment is zero-dimensional
SpatialUnitsInOneD	Invalid value for 'spatialSizeUnits' attribute of a one-dimensional compartment
SpatialUnitsInTwoD	Invalid value for the 'spatialSizeUnits' attribute of a two-dimensional compartment
SpatialUnitsInThreeD	Invalid value for the 'spatialSizeUnits' attribute of a three-dimensional compartment
InvalidSpeciesSusbstanceUnits	Invalid value for a Species 'units' attribute
BothAmountAndConcentrationSet	Cannot set both 'initialConcentration' and 'initialAmount' attributes simultaneously
NonBoundarySpeciesAssignedAndUsed	Cannot use a non-boundary species in both reactions and rules simultaneously
NonConstantSpeciesUsed	Cannot use a constant, non-boundary species as a reactant or product
InvalidSpeciesTypeRef	Invalid value for the 'speciesType' attribute of a species
MultSpeciesSameTypeInCompartment	Cannot have multiple species of the same species type in the same compartment
MissingSpeciesCompartment	Missing value for the 'compartment' attribute
SpatialSizeUnitsRemoved	Attribute 'spatialSizeUnits' is not supported in this Level+Version of SBML
SubstanceUnitsOnSpecies	No substance units defined for the species
ConversionFactorOnSpecies	Invalid value for the 'conversionFactor' attribute
AllowedAttributesOnSpecies	Invalid attribute found on Species object
InvalidParameterUnits	Invalid value for the 'units' attribute of a Parameter object
ParameterUnits	No units defined for the parameter
ConversionFactorMustConstant	A conversion factor must reference a Parameter object declared to be a constant
AllowedAttributesOnParameter	Invalid attribute found on Parameter object
InvalidInitAssignSymbol	Invalid value for the 'symbol' attribute of an InitialAssignment object
MultipleInitAssignments	Multiple initial assignments for the same 'symbol' value are not allowed
InitAssignmentAndRuleForSameId	Cannot set a value using both an initial assignment and an assignment rule simultaneously
OneMathElementPerInitialAssign	An InitialAssignment object may contain one `<math>` element
AllowedAttributesOnInitialAssign	Invalid attribute found on an InitialAssignment object
InitAssignmentCannotRef0DComp	InitialAssignment cannot reference 0D compartment
InvalidAssignRuleVariable	Invalid value for the 'variable' attribute of an AssignmentRule object
InvalidRateRuleVariable	Invalid value for the 'variable' attribute of a RateRule object
AssignmentToConstantEntity	An assignment rule cannot assign an entity declared to be constant
RateRuleForConstantEntity	A rate rule cannot assign an entity declared to be constant
CircularRuleDependency	Circular dependencies involving rules and reactions are not permitted
OneMathElementPerRule	A rule object may contain one `<math>` element
AllowedAttributesOnAssignRule	Invalid attribute found on an AssignmentRule object
AllowedAttributesOnRateRule	Invalid attribute found on a RateRule object
AllowedAttributesOnAlgRule	Invalid attribute found on an AlgebraicRule object
RuleCannotRef0DComp	Rule cannot reference 0D compartment
CircularDependencyRateOf	Circular dependencies are not permitted in RateRule and KineticLaw objects
ConstraintMathNotBoolean	A Constraint object's `<math>` must evaluate to a Boolean value
IncorrectOrderInConstraint	Subobjects inside the Constraint object are not in the prescribed order
ConstraintNotInXHTMLNamespace	A Constraint's Message subobject must be in the XHTML XML namespace
ConstraintContainsXMLDecl	XML declarations are not permitted within Constraint's Message objects
ConstraintContainsDOCTYPE	XML DOCTYPE elements are not permitted within Constraint's Message objects
InvalidConstraintContent	Invalid content for a Constraint object's Message object
OneMathElementPerConstraint	A Constraint object may contain one `<math>` element
OneMessageElementPerConstraint	A Constraint object can only have one Message subobject
AllowedAttributesOnConstraint	Invalid attribute found on Constraint object
NoReactantsOrProducts	Cannot have a reaction with neither reactants nor products
IncorrectOrderInReaction	Subobjects inside the Reaction object are not in the prescribed order
EmptyListInReaction	Reaction components, if present, cannot be empty
InvalidReactantsProductsList	Invalid object found in the list of reactants or products
InvalidModifiersList	Invalid object found in the list of modifiers
OneSubElementPerReaction	A Reaction object can only contain one of each allowed type of object
CompartmentOnReaction	Invalid value for the Reaction 'compartment' attribute
AllowedAttributesOnReaction	Invalid attribute for a Reaction object
InvalidSpeciesReference	Invalid 'species' attribute value in SpeciesReference object
BothStoichiometryAndMath	The 'stoichiometry' attribute and StoichiometryMath subobject are mutually exclusive
AllowedAttributesOnSpeciesReference	Invalid attribute found on the SpeciesReference object
AllowedAttributesOnModifier	Invalid attribute found on the ModifierSpeciesReference object
UndeclaredSpeciesRef	Unknown species referenced in the kinetic law `<math>` formula
IncorrectOrderInKineticLaw	Incorrect ordering of components in the KineticLaw object
EmptyListInKineticLaw	The list of parameters, if present, cannot be empty
NonConstantLocalParameter	Parameters local to a KineticLaw object must have a 'constant' attribute value of 'true'
SubsUnitsNoLongerValid	Attribute 'substanceUnits' is not supported in this Level+Version of SBML
TimeUnitsNoLongerValid	Attribute 'timeUnits' is not supported in this Level+Version of SBML
OneListOfPerKineticLaw	Only one ListOfLocalParameters object is permitted within a KineticLaw object
OnlyLocalParamsInListOfLocalParams	Only LocalParameter, Notes and Annotation objects are allowed in ListOfLocalParameter objects
AllowedAttributesOnListOfLocalParam	Invalid attribute found on the ListOfLocalParameters object
OneMathPerKineticLaw	Only one `<math>` element is allowed in a KineticLaw object
UndeclaredSpeciesInStoichMath	Unknown species referenced in the StoichiometryMath object's `<math>` formula
AllowedAttributesOnKineticLaw	Invalid attribute found on the KineticLaw object
AllowedAttributesOnListOfSpeciesRef	Invalid attribute found on the ListOfSpeciesReferences object
AllowedAttributesOnListOfMods	Invalid attribute found on the ListOfModifiers object
L3V2FastDeprecated	Fast attribute deprecated
AllowedAttributesOnLocalParameter	Invalid attribute found on the LocalParameter object
LocalParameterShadowsSpecies	Invalid attribute found on the LocalParameter object
MissingTriggerInEvent	The Event object is missing a Trigger subobject
TriggerMathNotBoolean	A Trigger object's `<math>` expression must evaluate to a Boolean value
MissingEventAssignment	The Event object is missing an EventAssignment subobject
TimeUnitsEvent	Units referenced by 'timeUnits' attribute are not compatible with units of time
IncorrectOrderInEvent	Incorrect ordering of components in Event object
ValuesFromTriggerTimeNeedDelay	Attribute 'useValuesFromTriggerTime'='false', but the Event object does not define a delay
DelayNeedsValuesFromTriggerTime	The use of a Delay object requires the Event attribute 'useValuesFromTriggerTime'
OneMathPerTrigger	A Trigger object may have one `<math>` element
OneMathPerDelay	A Delay object may have one `<math>` element
InvalidEventAssignmentVariable	Invalid 'variable' attribute value in Event object
EventAssignmentForConstantEntity	An EventAssignment object cannot assign to a component having attribute 'constant'='true'
OneMathPerEventAssignment	An EventAssignment object may have one `<math>` element
AllowedAttributesOnEventAssignment	Invalid attribute found on the EventAssignment object
OnlyOneDelayPerEvent	An Event object can only have one Delay subobject
OneListOfEventAssignmentsPerEvent	An Event object can only have one ListOfEventAssignments subobject
OnlyEventAssignInListOfEventAssign	Only EventAssignment, Notes and Annotation objects are allowed in ListOfEventAssignments
AllowedAttributesOnListOfEventAssign	Invalid attribute found on the ListOfEventAssignments object
AllowedAttributesOnEvent	Invalid attribute found on the Event object
AllowedAttributesOnTrigger	Invalid attribute found on the Trigger object
AllowedAttributesOnDelay	Invalid attribute found on the Delay object
PersistentNotBoolean	The Trigger attribute 'persistent' must evaluate to a Boolean value
InitialValueNotBoolean	The Trigger attribute 'initialValue' must evaluate to a Boolean value
OnlyOnePriorityPerEvent	An Event object can only have one Priority subobject
OneMathPerPriority	A Priority object may have one `<math>` element
AllowedAttributesOnPriority	Invalid attribute found on the Priority object
CompartmentShouldHaveSize	It's best to define a size for every compartment in a model
SpeciesShouldHaveValue	It's best to define an initial amount or initial concentration for every species in a model
ParameterShouldHaveUnits	It's best to declare units for every parameter in a model
ParameterShouldHaveValue	It's best to declare values for every parameter in a model
LocalParameterShadowsId	Local parameters defined within a kinetic law shadow global object symbols
CannotConvertToL1V1	Cannot convert to SBML Level 1 Version 1
NoEventsInL1	SBML Level 1 does not support events
NoFunctionDefinitionsInL1	SBML Level 1 does not support function definitions
NoConstraintsInL1	SBML Level 1 does not support constraints
NoInitialAssignmentsInL1	SBML Level 1 does not support initial assignments
NoSpeciesTypesInL1	SBML Level 1 does not support species types
NoCompartmentTypeInL1	SBML Level 1 does not support compartment types
NoNon3DCompartmentsInL1	SBML Level 1 only supports three-dimensional compartments
NoFancyStoichiometryMathInL1	SBML Level 1 does not support non-integer nor non-rational stoichiometry formulas
NoNonIntegerStoichiometryInL1	SBML Level 1 does not support non-integer 'stoichiometry' attribute values
NoUnitMultipliersOrOffsetsInL1	SBML Level 1 does not support multipliers or offsets in unit definitions
SpeciesCompartmentRequiredInL1	In SBML Level 1, a value for 'compartment' is mandatory in species definitions
NoSpeciesSpatialSizeUnitsInL1	SBML Level 1 does not support species 'spatialSizeUnits' settings
NoSBOTermsInL1	SBML Level 1 does not support the 'sboTerm' attribute
StrictUnitsRequiredInL1	SBML Level 1 requires strict unit consistency
ConversionFactorNotInL1	SBML Level 1 does not support the 'conversionFactor' attribute
CompartmentNotOnL1Reaction	SBML Level 1 does not support the 'compartment' attribute on Reaction objects
ExtentUnitsNotSubstance	Units of extent must be compatible with units of substance
GlobalUnitsNotDeclared	Global units must be refer to unit kind or unitDefinition
HasOnlySubstanceUnitsNotinL1	The concept of hasOnlySubstanceUnits was not available in SBML Level 1
AvogadroNotSupported	Avogadro not supported in Levels 2 and 1
NoConstraintsInL2v1	SBML Level 2 Version 1 does not support Constraint objects
NoInitialAssignmentsInL2v1	SBML Level 2 Version 1 does not support InitialAssignment objects
NoSpeciesTypeInL2v1	SBML Level 2 Version 1 does not support SpeciesType objects
NoCompartmentTypeInL2v1	SBML Level 2 Version 1 does not support CompartmentType objects
NoSBOTermsInL2v1	SBML Level 2 Version 1 does not support the 'sboTerm' attribute
NoIdOnSpeciesReferenceInL2v1	SBML Level 2 Version 1 does not support the 'id' attribute on SpeciesReference objects
NoDelayedEventAssignmentInL2v1	SBML Level 2 Version 1 does not support the 'useValuesFromTriggerTime' attribute
StrictUnitsRequiredInL2v1	SBML Level 2 Version 1 requires strict unit consistency
IntegerSpatialDimensions	SBML Level 2 Version 1 requires that compartments have spatial dimensions of 0-3
StoichiometryMathNotYetSupported	Conversion to StoichiometryMath objects not yet supported
PriorityLostFromL3	SBML Level 2 Version 1 does not support priorities on Event objects
NonPersistentNotSupported	SBML Level 2 Version 1 does not support the 'persistent' attribute on Trigger objects
InitialValueFalseEventNotSupported	SBML Level 2 Version 1 does not support the 'initialValue' attribute on Trigger objects
SBOTermNotUniversalInL2v2	The 'sboTerm' attribute is invalid for this component in SBML Level 2 Version 2
NoUnitOffsetInL2v2	This Level+Version of SBML does not support the 'offset' attribute on Unit objects
NoKineticLawTimeUnitsInL2v2	This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects
NoKineticLawSubstanceUnitsInL2v2	This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects
NoDelayedEventAssignmentInL2v2	This Level+Version of SBML does not support the 'useValuesFromTriggerTime' attribute
ModelSBOBranchChangedBeyondL2v2	The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version
StrictUnitsRequiredInL2v2	SBML Level 2 Version 2 requires strict unit consistency
StrictSBORequiredInL2v2	SBML Level 2 Version 2 requires strict SBO term consistency
DuplicateAnnotationInvalidInL2v2	Duplicate top-level annotations are invalid in SBML Level 2 Version 2
NoUnitOffsetInL2v3	This Level+Version of SBML does not support the 'offset' attribute on Unit objects
NoKineticLawTimeUnitsInL2v3	This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects
NoKineticLawSubstanceUnitsInL2v3	This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects
NoSpeciesSpatialSizeUnitsInL2v3	This Level+Version of SBML does not support the 'spatialSizeUnit' attribute on Species objects
NoEventTimeUnitsInL2v3	This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects
NoDelayedEventAssignmentInL2v3	This Level+Version of SBML does not support the 'useValuesFromTriggerTime' attribute
ModelSBOBranchChangedBeyondL2v3	The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version
StrictUnitsRequiredInL2v3	SBML Level 2 Version 3 requires strict unit consistency
StrictSBORequiredInL2v3	SBML Level 2 Version 3 requires strict SBO term consistency
DuplicateAnnotationInvalidInL2v3	Duplicate top-level annotations are invalid in SBML Level 2 Version 3
NoUnitOffsetInL2v4	This Level+Version of SBML does not support the 'offset' attribute on Unit objects
NoKineticLawTimeUnitsInL2v4	This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects
NoKineticLawSubstanceUnitsInL2v4	This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects
NoSpeciesSpatialSizeUnitsInL2v4	This Level+Version of SBML does not support the 'spatialSizeUnit' attribute on Species objects
NoEventTimeUnitsInL2v4	This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects
ModelSBOBranchChangedInL2v4	The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version
DuplicateAnnotationInvalidInL2v4	Duplicate top-level annotations are invalid in SBML Level 2 Version 4
NoSpeciesTypeInL3v1	SBML Level 3 Version 1 does not support SpeciesType objects
NoCompartmentTypeInL3v1	SBML Level 3 Version 1 does not support CompartmentType objects
NoUnitOffsetInL3v1	This Level+Version of SBML does not support the 'offset' attribute on Unit objects
NoKineticLawTimeUnitsInL3v1	This Level+Version of SBML does not support the 'timeUnits' attribute on KineticLaw objects
NoKineticLawSubstanceUnitsInL3v1	This Level+Version of SBML does not support the 'substanceUnits' attribute on KineticLaw objects
NoSpeciesSpatialSizeUnitsInL3v1	This Level+Version of SBML does not support the 'spatialSizeUnit' attribute on Species objects
NoEventTimeUnitsInL3v1	This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects
ModelSBOBranchChangedInL3v1	The allowable 'sboTerm' attribute values for Model objects differ for this SBML Level+Version
DuplicateAnnotationInvalidInL3v1	Duplicate top-level annotations are invalid in SBML Level 3 Version 1
NoCompartmentOutsideInL3v1	This Level+Version of SBML does not support the 'outside' attribute on Compartment objects
NoStoichiometryMathInL3v1	This Level+Version of SBML does not support the StoichiometryMath object
DoubleExponentNotSupported	Exponent of type float not supported in Levels 2 and 1.
MathMLElementNotSupported	This MathML element is only permitted in L3V2
EmptyListOfElementNotSupported	Empty 'ListOf' element is only permitted in L3V2
MissingMathElementNotSupported	Missing `<math>` element is only permitted in L3V2
MissingTriggerElementNotSupported	missing `<trigger>` element is only permitted in L3V2
BooleanNumericDiscrepancy	Interchange of Boolean and numeric values only permitted in L3V2
IdNameSBaseInL3V2	Conversion will lose attributes only available in L3V2 and higher
MissingParticipantsNotSupported	Omission of both `<listOfReactants>` and `<listOfProducts>` is only valid in L3V2
ConvertibleMathInitialAssignment	Some L3V2-specific MathML elements are not permitted in InitialAssignment objects
FastReactionsNotSupported	Conversion of reactions employing the 'fast' attribute is not supported
InvalidSBMLLevelVersion	Unknown Level+Version combination of SBML
AnnotationNotesNotAllowedLevel1	Annotation objects on the SBML container element are not permitted in SBML Level 1
InvalidRuleOrdering	Invalid ordering of rules
RequiredPackagePresent	The SBML document requires an SBML Level 3 package unavailable in this software
UnrequiredPackagePresent	The SBML document uses an SBML Level 3 package unavailable in this software
PackageRequiredShouldBeFalse	This package expects required to be false
SubsUnitsAllowedInKL	Disallowed value for attribute 'substanceUnits' on KineticLaw object
TimeUnitsAllowedInKL	Disallowed value for attribute 'timeUnits' on KineticLaw object
FormulaInLevel1KL	Only predefined functions are allowed in SBML Level 1 formulas
L3SubstanceUnitsOnModel	Invalid 'substanceUnits' attribute value
StoichiometryMathMissingMath	The `<stoichiometryMath>` element must contain a `<math>` element
TimeUnitsRemoved	This Level+Version of SBML does not support the 'timeUnits' attribute on Event objects
BadMathML	Invalid MathML expression
FailedMathMLReadOfDouble	Missing or invalid floating-point number in MathML expression
FailedMathMLReadOfInteger	Missing or invalid integer in MathML expression
FailedMathMLReadOfExponential	Missing or invalid exponential expression in MathML
FailedMathMLReadOfRational	Missing or invalid rational expression in MathML
BadMathMLNodeType	Invalid MathML element
InvalidMathMLAttribute	Invalid MathML attribute
NoTimeSymbolInFunctionDef	Use of `<csymbol>` for 'time' not allowed within FunctionDefinition objects
NoBodyInFunctionDef	There must be a `<lambda>` body within the `<math>` element of a FunctionDefinition object
DanglingUnitSIdRef	Units must refer to valid unit or unitDefinition
RDFMissingAboutTag	RDF missing the `<about>` tag
RDFEmptyAboutTag	RDF empty `<about>` tag
RDFAboutTagNotMetaid	RDF `<about>` tag is not metaid
RDFNotCompleteModelHistory	RDF does not contain valid ModelHistory
RDFNotModelHistory	RDF does not result in a ModelHistory
AnnotationNotElement	Annotation must contain element
NestedAnnotationNotAllowed	Nested annotations not allowed
UndeclaredUnits	Missing unit declarations on parameters or literal numbers in expression
UndeclaredTimeUnitsL3	Unable to verify consistency of units: the unit of time has not been declared
UndeclaredExtentUnitsL3	Unable to verify consistency of units: the units of reaction extent have not been declared
UndeclaredObjectUnitsL3	Unable to verify consistency of units: encountered a model entity with no declared units
CannotVerifyUnitsObjectNoMath	Unable to verify consistency of units: encountered an object with no `<math>` element
UnrecognisedSBOTerm	Unrecognized 'sboTerm' attribute value
ObseleteSBOTerm	Obsolete 'sboTerm' attribute value
IncorrectCompartmentSpatialDimensions	In SBML Level 1, only three-dimensional compartments are allowed
CompartmentTypeNotValidAttribute	CompartmentType objects are not available in this Level+Version of SBML
ConstantNotValidAttribute	This Level+Version of SBML does not support the 'constant' attribute on this component
MetaIdNotValidAttribute	Attribute 'metaid' is not available in SBML Level 1
SBOTermNotValidAttributeBeforeL2V3	The 'sboTerm' attribute is not available on this component before SBML Level 2 Version 3
InvalidL1CompartmentUnits	Invalid units for a compartment in SBML Level 1
L1V1CompartmentVolumeReqd	In SBML Level 1, a compartment's volume must be specified
CompartmentTypeNotValidComponent	CompartmentType objects are not available in this Level+Version of SBML
ConstraintNotValidComponent	Constraint objects are not available in this Level+Version of SBML
EventNotValidComponent	Event objects are not available in this Level+Version of SBML
SBOTermNotValidAttributeBeforeL2V2	The 'sboTerm' attribute is invalid for this component before Level 2 Version 2
FuncDefNotValidComponent	FunctionDefinition objects are not available in this Level+Version of SBML
InitialAssignNotValidComponent	InitialAssignment objects are not available in this Level+Version of SBML
VariableNotValidAttribute	Attribute 'variable' is not available on this component in this Level+Version of SBML
UnitsNotValidAttribute	Attribute 'units' is not available on this component in this Level+Version of SBML
ConstantSpeciesNotValidAttribute	Attribute 'constant' is not available on Species objects in SBML Level 1
SpatialSizeUnitsNotValidAttribute	Attribute 'spatialSizeUnits' is not available on Species objects in SBML Level 1
SpeciesTypeNotValidAttribute	Attribute 'speciesType' is not available on Species objects in SBML Level 1
HasOnlySubsUnitsNotValidAttribute	Attribute 'hasOnlySubstanceUnits' is not available on Species objects in SBML Level 1
IdNotValidAttribute	Attribute 'id' is not available on SpeciesReference objects in SBML Level 1
NameNotValidAttribute	Attribute 'name' is not available on SpeciesReference objects in SBML Level 1
SpeciesTypeNotValidComponent	The SpeciesType object is not supported in SBML Level 1
StoichiometryMathNotValidComponent	The StoichiometryMath object is not supported in SBML Level 1
MultiplierNotValidAttribute	Attribute 'multiplier' on Unit objects is not supported in SBML Level 1
OffsetNotValidAttribute	Attribute 'offset' on Unit objects is only available in SBML Level 2 Version 1
L3SpatialDimensionsUnset	No value given for 'spatialDimensions' attribute; assuming a value of 3
PackageConversionNotSupported	Conversion of SBML Level 3 package constructs is not yet supported
InvalidTargetLevelVersion	The requested SBML Level/Version combination is not known to exist
L3NotSupported	SBML Level 3 is not yet supported
CompUnknown
CompNSUndeclared	The comp ns is not correctly declared
CompElementNotInNs	Element not in comp namespace
CompDuplicateComponentId	Duplicate 'id' attribute value
CompUniqueModelIds	Model and ExternalModelDefinitions must have unique ids
CompUniquePortIds	Ports must have unique ids
CompInvalidSIdSyntax	Invalid SId syntax
CompInvalidSubmodelRefSyntax	Invalid submodelRef syntax
CompInvalidDeletionSyntax	Invalid deletion syntax
CompInvalidConversionFactorSyntax	Invalid conversionFactor syntax
CompInvalidNameSyntax	Invalid name syntax
CompReplacedUnitsShouldMatch	Units of replaced elements should match replacement units.
CompOneListOfReplacedElements	Only one `<listOfReplacedElements>` allowed.
CompLOReplaceElementsAllowedElements	Allowed children of `<listOfReplacedElements>`
CompLOReplacedElementsAllowedAttribs	Allowed `<listOfReplacedElements>` attributes
CompEmptyLOReplacedElements	`<listOfReplacedElements>` must not be empty
CompOneReplacedByElement	Only one `<replacedBy>` object allowed.
CompAttributeRequiredMissing	Required comp:required attribute on `<sbml>`
CompAttributeRequiredMustBeBoolean	The comp:required attribute must be Boolean
CompRequiredTrueIfElementsRemain	The comp:required attribute must be 'true' if math changes
CompRequiredFalseIfAllElementsReplaced	The comp:required attribute must be 'false' if math does not change
CompOneListOfModelDefinitions	Only one `<listOfModelDefinitions>` allowed.
CompEmptyLOModelDefs	`<listOfModelDefinitions>` and `<listOfExternalModelDefinitions>` must not be empty
CompLOModelDefsAllowedElements	Only `<modelDefinitions>` in `<listOfModelDefinitions>`
CompLOExtModelDefsAllowedElements	Only `<externalModelDefinitions>` in `<listOfExternalModelDefinitions>`
CompLOModelDefsAllowedAttributes	Allowed `<listOfModelDefinitions>` attributes
CompLOExtModDefsAllowedAttributes	Allowed `<listOfExternalModelDefinitions>` attributes
CompOneListOfExtModelDefinitions	Only one `<listOfExternalModelDefinitions>` allowed.
CompAttributeRequiredMustBeTrue	The comp:required attribute must be 'true'
CompExtModDefAllowedCoreAttributes	Allowed `<externalModelDefinitions>` core attributes
CompExtModDefAllowedElements	Allowed `<externalModelDefinitions>` elements
CompExtModDefAllowedAttributes	Allowed `<externalModelDefinitions>` attributes
CompReferenceMustBeL3	External models must be L3
CompModReferenceMustIdOfModel	'modelRef' must be the 'id' of a model in the 'source' document
CompExtModMd5DoesNotMatch	MD5 checksum does not match the 'source' document
CompInvalidSourceSyntax	The 'comp:source' attribute must be of type 'anyURI'
CompInvalidModelRefSyntax	The 'comp:modelRef' attribute must have the syntax of 'SId'
CompInvalidMD5Syntax	The 'comp:md5' attribute must have the syntax of 'string'
CompCircularExternalModelReference	Circular reference in `<externalModelDefinitiongt;`
CompOneListOfOnModel	Only one `<listOfSubmodels>` and one `<listOfPorts>` allowed
CompNoEmptyListOfOnModel	No empty listOf elements allowed
CompLOSubmodelsAllowedElements	Allowed elements on `<listOfSubmodels>`
CompLOPortsAllowedElements	Allowed elements on `<listOfPorts>`
CompLOSubmodelsAllowedAttributes	Allowed attributes on `<listOfSubmodels>`
CompLOPortsAllowedAttributes	Allowed attributes on `<listOfPorts>`
CompSubmodelAllowedCoreAttributes	Allowed core attributes on `<submodel>`
CompSubmodelAllowedElements	Allowed elements on `<submodel>`
CompOneListOfDeletionOnSubmodel	Only one `<listOfDeletions>` on a `<submodel>` allowed
CompSubmodelNoEmptyLODeletions	No empty listOfDeletions elements allowed
CompLODeletionsAllowedElements	Allowed elements on `<listOfDeletions>`
CompLODeletionAllowedAttributes	Allowed `<listOfDeletions>` attributes
CompSubmodelAllowedAttributes	Allowed `<submodel>` attributes
CompModReferenceSyntax	'comp:modelRef' must conform to SId syntax
CompInvalidTimeConvFactorSyntax	'comp:timeConversionFactor' must conform to SId syntax
CompInvalidExtentConvFactorSyntax	'comp:extentConversionFactor' must conform to SId syntax
CompSubmodelMustReferenceModel	The 'comp:modelRef' attribute must reference a model
CompSubmodelCannotReferenceSelf	The 'comp:modelRef' attribute cannot reference own model
CompModCannotCircularlyReferenceSelf	`<model>` may not reference `<submodel>` that references itself.
CompTimeConversionMustBeParameter	The 'comp:timeConversionFactor' must reference a parameter
CompExtentConversionMustBeParameter	The 'comp:extentConversionFactor' must reference a parameter
CompPortRefMustReferencePort	The 'comp:portRef' attribute must be the 'id' of a `<port>`
CompIdRefMustReferenceObject	The 'comp:idRef' attribute must be the 'id' of a model element
CompUnitRefMustReferenceUnitDef	The 'comp:unitRef' attribute must be the 'id' of a UnitDefinition
CompMetaIdRefMustReferenceObject	The 'comp:metaIdRef' attribute must be the 'metaid' of an object
CompParentOfSBRefChildMustBeSubmodel	If `<sBaseRef>` has a child `<sBaseRef>` its parent must be a `<submodel>`
CompInvalidPortRefSyntax	The 'comp:portRef' attribute must have the syntax of an SBML SId
CompInvalidIdRefSyntax	The 'comp:idRef' attribute must have the syntax of an SBML SId
CompInvalidUnitRefSyntax	The 'comp:unitRef' attribute must have the syntax of an SBML SId
CompInvalidMetaIdRefSyntax	The 'comp:metaIdRef' attribute must have the syntax of an XML ID
CompOneSBaseRefOnly	Only one `<sbaseRef>`
CompDeprecatedSBaseRefSpelling	The spelling 'sbaseRef' is deprecated
CompSBaseRefMustReferenceObject	An SBaseRef must reference an object.
CompSBaseRefMustReferenceOnlyOneObject	An SBaseRef must reference only one other object.
CompNoMultipleReferences	Objects may not be referenced by mutiple SBaseRef constructs.
CompPortMustReferenceObject	Port must reference an object
CompPortMustReferenceOnlyOneObject	Port must reference only one other object.
CompPortAllowedAttributes	Allowed attributes on a Port
CompPortReferencesUnique	Port definitions must be unique.
CompDeletionMustReferenceObject	Deletion must reference an object
CompDeletionMustReferOnlyOneObject	Deletion must reference only one other object.
CompDeletionAllowedAttributes	Allowed attributes on a Deletion
CompReplacedElementMustRefObject	ReplacedElement must reference an object
CompReplacedElementMustRefOnlyOne	ReplacedElement must reference only one other object.
CompReplacedElementAllowedAttributes	Allowed attributes on `<replacedElement>`
CompReplacedElementSubModelRef	The 'comp:submodelRef' attribute must point to a `<submodel>`
CompReplacedElementDeletionRef	The 'comp:deletion' attribute must point to a `<deletion>`
CompReplacedElementConvFactorRef	The 'comp:conversionFactor attribute must point to a `<parameter>`
CompReplacedElementSameReference	No `<replacedElement>` refer to same object
CompReplacedElementNoDelAndConvFact	No `<replacedElement>` with deletion and conversionfactor
CompReplacedByMustRefObject	ReplacedBy must reference an object
CompReplacedByMustRefOnlyOne	ReplacedBy must reference only one other object.
CompReplacedByAllowedAttributes	Allowed attributes on `<replacedBy>`
CompReplacedBySubModelRef	The 'comp:submodelRef' attribute must point to a `<submodel>`
CompMustReplaceSameClass	Replaced classes must match.
CompMustReplaceIDs	Replaced IDs must be replaced with IDs.
CompMustReplaceMetaIDs	Replaced metaids must be replaced with metaids.
CompMustReplacePackageIDs	Replaced package IDs must be replaced with package IDs.
CompUnresolvedReference	Unresolved reference.
CompNoModelInReference	No model in referenced document.
CompExtModDefBad	Referenced `<externalModelDefinitiongt;` unresolvable.
CompModelFlatteningFailed	Model failed to flatten.
CompFlatModelNotValid	Flat model not valid.
CompLineNumbersUnreliable	Line numbers unreliable.
CompFlatteningNotRecognisedReqd	Flattening not implemented for required package.
CompFlatteningNotRecognisedNotReqd	Flattening not implemented for unrequired package.
CompFlatteningNotImplementedNotReqd	Flattening not implemented for unrequired package.
CompFlatteningNotImplementedReqd	Flattening not implemented for required package.
CompFlatteningWarning	Flattening reference may come from package.
CompDeprecatedDeleteFunction	The performDeletions functions is deprecated.
CompDeprecatedReplaceFunction	The performReplacementsAndConversions fuctions is deprecated.
CompDeletedReplacement	Element deleted before a subelement could be replaced.
CompIdRefMayReferenceUnknownPackage	The 'comp:idRef' attribute must be the 'id' of a model element
CompMetaIdRefMayReferenceUnknownPkg	The 'comp:metaIdRef' attribute must be the 'metaid' of a model element
FbcUnknown
FbcNSUndeclared	The fbc ns is not correctly declared
FbcElementNotInNs	Element not in fbc namespace
FbcDuplicateComponentId	Duplicate 'id' attribute value
FbcSBMLSIdSyntax	Invalid 'id' attribute
FbcAttributeRequiredMissing	Required fbc:required attribute on `<sbml>`
FbcAttributeRequiredMustBeBoolean	The fbc:required attribute must be Boolean
FbcRequiredFalse	The fbc:required attribute must be 'false'
FbcOnlyOneEachListOf	One of each list of allowed
FbcNoEmptyListOfs	ListOf elements cannot be empty
FbcLOFluxBoundsAllowedElements	Allowed elements on ListOfFluxBounds
FbcLOObjectivesAllowedElements	Allowed elements on ListOfObjectives
FbcLOFluxBoundsAllowedAttributes	Allowed attributes on ListOfFluxBounds
FbcLOObjectivesAllowedAttributes	Allowed attributes on ListOfObjectives
FbcActiveObjectiveSyntax	Type of activeObjective attribute
FbcActiveObjectiveRefersObjective	ActiveObjective must reference Objective
FbcModelMustHaveStrict	'Strict' attribute required on `<model>`
FbcModelStrictMustBeBoolean	'Strict' attribute must be Boolean
FbcLOGeneProductsAllowedElements	Allowed elements on ListOfGeneProducts
FbcLOGeneProductsAllowedAttributes	Allowed attributes on ListOfGeneProducts
FbcSpeciesAllowedL3Attributes	Species allowed attributes
FbcSpeciesChargeMustBeInteger	Charge must be integer
FbcSpeciesFormulaMustBeString	Chemical formula must be string
FbcFluxBoundAllowedL3Attributes	`<fluxBound>` may only have 'metaId' and 'sboTerm' from L3 namespace
FbcFluxBoundAllowedElements	`<fluxBound>` may only have `<notes>` and `<annotations>` from L3 Core
FbcFluxBoundRequiredAttributes	Invalid attribute found on `<fluxBound>` object
FbcFluxBoundRectionMustBeSIdRef	Datatype for 'fbc:reaction' must be SIdRef
FbcFluxBoundNameMustBeString	The attribute 'fbc:name' must be of the data type string
FbcFluxBoundOperationMustBeEnum	The attribute 'fbc:operation' must be of data type FbcOperation
FbcFluxBoundValueMustBeDouble	The attribute 'fbc:value' must be of the data type float
FbcFluxBoundReactionMustExist	'fbc:reaction' must refer to valid reaction
FbcFluxBoundsForReactionConflict	Conflicting set of FluxBounds for a reaction
FbcObjectiveAllowedL3Attributes	`<objective>` may only have 'metaId' and 'sboTerm' from L3 namespace
FbcObjectiveAllowedElements	`<objective>` may only have `<notes>` and `<annotations>` from L3 Core
FbcObjectiveRequiredAttributes	Invalid attribute found on `<objective>` object
FbcObjectiveNameMustBeString	The attribute 'fbc:name' must be of the data type string
FbcObjectiveTypeMustBeEnum	The attribute 'fbc:type' must be of data type FbcType.
FbcObjectiveOneListOfObjectives	An `<objective>` must have one `<listOfFluxObjectives>`.
FbcObjectiveLOFluxObjMustNotBeEmpty	`<listOfFluxObjectives>` subobject must not be empty
FbcObjectiveLOFluxObjOnlyFluxObj	Invalid element found in `<listOfFluxObjectives>`
FbcObjectiveLOFluxObjAllowedAttribs	`<listOfFluxObjectives>` may only have 'metaId' and 'sboTerm' from L3 core
FbcFluxObjectAllowedL3Attributes	`<fluxObjectivegt;` may only have 'metaId' and 'sboTerm' from L3 namespace
FbcFluxObjectAllowedElements	`<fluxObjectivegt;` may only have `<notes>` and `<annotations>` from L3 Core
FbcFluxObjectRequiredAttributes	Invalid attribute found on `<fluxObjectivegt;` object
FbcFluxObjectNameMustBeString	The attribute 'fbc:name' must be of the data type string
FbcFluxObjectReactionMustBeSIdRef	Datatype for 'fbc:reaction' must be SIdRef
FbcFluxObjectReactionMustExist	'fbc:reaction' must refer to valid reaction
FbcFluxObjectCoefficientMustBeDouble	The attribute 'fbc:coefficient' must be of the data type float
FbcFluxObjectCoefficientWhenStrict	The 'fbc:coefficient' must be declared when strict
FbcReactionOnlyOneGeneProdAss	One GeneProductAssociation in a Reaction
FbcReactionAllowedAttributes	Fbc attributes on a Reaction
FbcReactionLwrBoundSIdRef	LowerBound must be SIdRef
FbcReactionUpBoundSIdRef	UpperBound must be SIdRef
FbcReactionLwrBoundRefExists	LowerBound must point to Parameter
FbcReactionUpBoundRefExists	UpperBound must point to Parameter
FbcReactionMustHaveBoundsStrict	Reaction must have bounds when strict
FbcReactionConstantBoundsStrict	Reaction bounds constant when strict
FbcReactionBoundsMustHaveValuesStrict	Reaction bounds must have values when strict
FbcReactionBoundsNotAssignedStrict	Reaction bounds not assigned when strict
FbcReactionLwrBoundNotInfStrict	LowerBound cannot be INF when strict
FbcReactionUpBoundNotNegInfStrict	UpperBound cannot be -INF when strict
FbcReactionLwrLessThanUpStrict	LowerBound less than upperBound when strict
FbcSpeciesReferenceConstantStrict	SpeciesReferences must be constant when strict
FbcSpeciesRefsStoichMustBeRealStrict	Stoichiometry of SpeciesReferences must be real valued when strict
FbcSpeciesRefNotAssignedStrict	SpeciesReference not target of InitialAssignment when strict
FbcGeneProdAssocAllowedCoreAttribs	Allowed core attributes on `<GeneProductAssociationgt;`
FbcGeneProdAssocAllowedCoreElements	Allowed core elements on `<GeneProductAssociationgt;`
FbcGeneProdAssocAllowedAttribs	Allowed fbc attributes on `<GeneProductAssociationgt;`
FbcGeneProdAssocIdSyntax	'fbc:id' must have SId syntax
FbcGeneProdAssocContainsOneElement	`<GeneProductAssociationgt;` must contain one concrete object
FbcGeneProdAssocNameMustBeString	'fbc:name' must be string
FbcGeneProdRefAllowedCoreAttribs	Allowed core attributes on `<GeneProductRefgt;`
FbcGeneProdRefAllowedCoreElements	Allowed core elements on `<GeneProductRefgt;`
FbcGeneProdRefAllowedAttribs	Allowed fbc attributes on `<GeneProductRefgt;`
FbcGeneProdRefGeneProductSIdRef	'fbc:geneProduct' must be SIdRef
FbcGeneProdRefGeneProductExists	'fbc:geneProduct' must point to existing `<GeneProductgt;`
FbcAndAllowedCoreAttributes	Allowed core attributes on `<And>`
FbcAndAllowedCoreElements	Allowed core attributes on `<And>`
FbcAndTwoChildren	`<And>` must have at least two child elements
FbcOrAllowedCoreAttributes	Allowed core attributes on `<Or>`
FbcOrAllowedCoreElements	Allowed core elements on `<Or>`
FbcOrTwoChildren	`<Or>` must have at least two child elements
FbcGeneProductAllowedCoreAttributes	Allowed core attributes on `<GeneProductgt;`
FbcGeneProductAllowedCoreElements	Allowed core elements on `<GeneProductgt;`
FbcGeneProductAllowedAttributes	Allowed fbc attributes on `<GeneProductgt;`
FbcGeneProductLabelMustBeString	'fbc:label' must be string
FbcGeneProductLabelMustBeUnique	'fbc:label' must be unique
FbcGeneProductNameMustBeString	'fbc:name' must be string
FbcGeneProductAssocSpeciesMustExist	'fbc:associatedSpecies' must point to existing `<species>`
QualUnknown
QualNSUndeclared	The qual ns is not correctly declared
QualElementNotInNs	Element not in qual namespace
QualFunctionTermBool	FunctionTerm should return Boolean
QualMathCSymbolDisallowed	CSymbol time or delay not allowed
QualDuplicateComponentId	Duplicate 'id' attribute value
QualAttributeRequiredMissing	Required qual:required attribute on `<sbml>`
QualAttributeRequiredMustBeBoolean	The qual:required attribute must be Boolean
QualRequiredTrueIfTransitions	The qual:required attribute must be 'true' if math changes
QualOneListOfTransOrQS	Only one `<listOfTransitions>` or `<listOfQualitativeSpeciesgt;` allowed.
QualEmptyLONotAllowed	Empty `<listOfTransitions>` or `<listOfQualitativeSpeciesgt;` not allowed.
QualLOTransitiondAllowedElements	Elements allowed on `<listOfTransitions>`.
QualLOQualSpeciesAllowedElements	Elements allowed on `<listOfTransitions>`.
QualLOQualSpeciesAllowedAttributes	Attributes allowed on `<listOfQualitativeSpeciesgt;`.
QualLOTransitionsAllowedAttributes	Attributes allowed on `<listOfTransitions>`.
QualQualSpeciesAllowedCoreAttributes	Core attributes allowed on `<qualitativeSpeciesgt;`.
QualQualSpeciesAllowedElements	Elements allowed on `<qualitativeSpeciesgt;`.
QualQualSpeciesAllowedAttributes	Attributes allowed on `<qualitativeSpeciesgt;`.
QualConstantMustBeBool	Attribute 'constant' on `<qualitativeSpeciesgt;` must be Boolean.
QualNameMustBeString	Attribute 'name' on `<qualitativeSpeciesgt;` must be string.
QualInitialLevelMustBeInt	Attribute 'initialLevel' on `<qualitativeSpeciesgt;` must be integer.
QualMaxLevelMustBeInt	Attribute 'maxLevel' on `<qualitativeSpeciesgt;` must be integer.
QualCompartmentMustReferExisting	Attribute 'compartment' on `<qualitativeSpeciesgt;` must reference compartment.
QualInitialLevelCannotExceedMax	Attribute 'initialLevel' on `<qualitativeSpeciesgt;` cannot exceed maxLevel.
QualConstantQSCannotBeOutput	Constant `<qualitativeSpeciesgt;` cannot be an Output.
QualQSAssignedOnlyOnce	A `<qualitativeSpeciesgt;` can only be assigned once.
QualInitalLevelNotNegative	Attribute 'initialLevel' on `<qualitativeSpeciesgt;` cannot be negative.
QualMaxLevelNotNegative	Attribute 'maxLevel' on `<qualitativeSpeciesgt;` cannot be negative.
QualTransitionAllowedCoreAttributes	Core attributes allowed on `<transition>`.
QualTransitionAllowedElements	Elements allowed on `<transition>`.
QualTransitionAllowedAttributes	Attributes allowed on `<transition>`.
QualTransitionNameMustBeString	Attribute 'name' on `<transition>` must be string.
QualTransitionLOElements	ListOf elements on `<transition>`.
QualTransitionEmptyLOElements	ListOf elements on `<transition>` not empty.
QualTransitionLOInputElements	Elements on `<listOfInputs>`.
QualTransitionLOOutputElements	Elements on `<listOfOutputs>`.
QualTransitionLOFuncTermElements	Elements on `<listOfFunctionTerms>`.
QualTransitionLOInputAttributes	Attributes allowed on `<listOfInputs>`.
QualTransitionLOOutputAttributes	Attributes allowed on `<listOfOutputs>`.
QualTransitionLOFuncTermAttributes	Attributes allowed on `<listOfFunctionTerms>`.
QualTransitionLOFuncTermExceedMax	`<listOfFunctionTerms>` cannot make qualitativeSpecies exceed maxLevel.
QualTransitionLOFuncTermNegative	`<listOfFunctionTerms>` cannot make qualitativeSpecies negative.
QualInputAllowedCoreAttributes	Core attributes allowed on `<input>`.
QualInputAllowedElements	Elements allowed on `<input>`.
QualInputAllowedAttributes	Attributes allowed on `<input>`.
QualInputNameMustBeString	Attribute 'name' on `<input>` must be string.
QualInputSignMustBeSignEnum	Attribute 'sign' on `<input>` must be enum.
QualInputTransEffectMustBeInputEffect	Attribute 'transitionEffect' on `<input>` must be enum.
QualInputThreshMustBeInteger	Attribute 'thresholdLevel' on `<input>` must be non negative integer.
QualInputQSMustBeExistingQS	Attribute 'qualitativeSpecies' on `<input>` must refer to existing
QualInputConstantCannotBeConsumed	Constant `<input>` cannot be consumed.
QualInputThreshMustBeNonNegative	Attribute 'thresholdLevel' on `<input>` must be non negative integer.
QualOutputAllowedCoreAttributes	Core attributes allowed on `<output>`.
QualOutputAllowedElements	Elements allowed on `<output>`.
QualOutputAllowedAttributes	Attributes allowed on `<output>`.
QualOutputNameMustBeString	Attribute 'name' on `<output>` must be string.
QualOutputTransEffectMustBeOutput	Attribute 'transitionEffect' on `<output>` must be enum.
QualOutputLevelMustBeInteger	Attribute 'outputLevel' on `<output>` must be non negative integer.
QualOutputQSMustBeExistingQS	Attribute 'qualitativeSpecies' on `<output>` must refer to existing
QualOutputConstantMustBeFalse	Constant 'qualitativeSpecies' cannot be `<output>`
QualOutputProductionMustHaveLevel	`<output>` being produced must have level
QualOutputLevelMustBeNonNegative	Attribute 'outputLevel' on `<output>` must be non negative integer.
QualDefaultTermAllowedCoreAttributes	Core attributes allowed on `<defaultTerm>`.
QualDefaultTermAllowedElements	Elements allowed on `<defaultTerm>`.
QualDefaultTermAllowedAttributes	Attributes allowed on `<defaultTerm>`.
QualDefaultTermResultMustBeInteger	Attribute 'resultLevel' on `<defaultTerm>` must be non negative integer.
QualDefaultTermResultMustBeNonNeg	Attribute 'resultLevel' on `<defaultTerm>` must be non negative integer.
QualFuncTermAllowedCoreAttributes	Core attributes allowed on `<functionTerm>`.
QualFuncTermAllowedElements	Elements allowed on `<functionTerm>`.
QualFuncTermAllowedAttributes	Attributes allowed on `<functionTerm>`.
QualFuncTermOnlyOneMath	Only one `<math>` on `<functionTerm>`.
QualFuncTermResultMustBeInteger	Attribute 'resultLevel' on `<functionTerm>` must be non negative integer.
QualFuncTermResultMustBeNonNeg	Attribute 'resultLevel' on `<functionTerm>` must be non negative integer.
GroupsUnknown
GroupsNSUndeclared	The Groups namespace is not correctly declared.
GroupsElementNotInNs	Element not in Groups namespace
GroupsDuplicateComponentId	Duplicate 'id' attribute value
GroupsIdSyntaxRule	Invalid SId syntax
GroupsAttributeRequiredMissing	Required groups:required attribute on `<sbml>`
GroupsAttributeRequiredMustBeBoolean	The groups:required attribute must be Boolean
GroupsAttributeRequiredMustHaveValue	The groups:required attribute must be 'false'
GroupsModelAllowedElements	Elements allowed on `<model>`.
GroupsModelEmptyLOElements	No Empty ListOf elements allowed on `<Modelgt;`.
GroupsModelLOGroupsAllowedCoreElements	Core elements allowed on `<model>`.
GroupsModelLOGroupsAllowedCoreAttributes	Core attributes allowed on `<model>`.
GroupsGroupAllowedCoreAttributes	Core attributes allowed on `<group>`.
GroupsGroupAllowedCoreElements	Core elements allowed on `<group>`.
GroupsGroupAllowedAttributes	Attributes allowed on `<group>`.
GroupsGroupAllowedElements	Elements allowed on `<group>`.
GroupsGroupKindMustBeGroupKindEnum	Kind attribute must be GroupKind.
GroupsGroupNameMustBeString	Name attribute must be String.
GroupsGroupEmptyLOElements	No Empty ListOf elements allowed on `<group>`.
GroupsGroupLOMembersAllowedCoreElements	Core elements allowed on `<listOfMembers>`.
GroupsGroupLOMembersAllowedCoreAttributes	Core attributes allowed on `<listOfMembers>`.
GroupsGroupLOMembersAllowedAttributes	Attributes allowed on `<listOfMembers>`.
GroupsLOMembersNameMustBeString	Name attribute must be String.
GroupsLOMembersConsistentReferences	Consistent references by multiple `<member>` objects.
GroupsNotCircularReferences	Circular references by multiple `<member>` objects.
GroupsMemberAllowedCoreAttributes	Core attributes allowed on `<member>`.
GroupsMemberAllowedCoreElements	Core elements allowed on `<member>`.
GroupsMemberAllowedAttributes	Attributes allowed on `<member>`.
GroupsMemberNameMustBeString	Name attribute must be String.
GroupsMemberIdRefMustBeSBase	Attribute 'idRef' must point to SBase object.
GroupsMemberMetaIdRefMustBeSBase	Attribute 'metaIdRef' must point to SBase object.
GroupsMemberIdRefMustBeSId	Attribute 'idRef' must be type 'SId'.
GroupsMemberMetaIdRefMustBeID	Attribute 'metaIdRef' must be type 'ID'.
LayoutUnknownError
LayoutNSUndeclared	The layout ns is not correctly declared
LayoutElementNotInNs	Element not in layout namespace
LayoutDuplicateComponentId	Duplicate 'id' attribute value
LayoutSIdSyntax	'id' attribute incorrect syntax
LayoutXsiTypeAllowedLocations	'xsi:type' allowed locations
LayoutXsiTypeSyntax	'xsi:type' attribute incorrect syntax
LayoutAttributeRequiredMissing	Required layout:required attribute on `<sbml>`
LayoutAttributeRequiredMustBeBoolean	The layout:required attribute must be Boolean
LayoutRequiredFalse	The layout:required attribute must be 'false'
LayoutOnlyOneLOLayouts	Only one listOfLayouts on `<model>`
LayoutLOLayoutsNotEmpty	ListOf elements cannot be empty
LayoutLOLayoutsAllowedElements	Allowed elements on ListOfLayouts
LayoutLOLayoutsAllowedAttributes	Allowed attributes on ListOfLayouts
LayoutLayoutAllowedElements	Allowed elements on Layout
LayoutLayoutAllowedCoreAttributes	Allowed core attributes on Layout
LayoutOnlyOneEachListOf	Only one each listOf on `<layout>`
LayoutNoEmptyListOfs	ListOf elements cannot be empty
LayoutLayoutAllowedAttributes	`<layout>` must have 'id' and may have 'name'
LayoutLayoutNameMustBeString	'name' must be string
LayoutLOCompGlyphAllowedAttributes	Attributes allowed on `<listOfCompartmentGlyphs>`.
LayoutLOCompGlyphAllowedElements	Elements allowed on `<listOfCompartmentGlyphs>`.
LayoutLOSpeciesGlyphAllowedAttributes	Attributes allowed on `<listOfSpeciesGlyphs>`.
LayoutLOSpeciesGlyphAllowedElements	Elements allowed on `<listOfSpeciesGlyphs>`.
LayoutLORnGlyphAllowedAttributes	Attributes allowed on `<listOfReactionGlyphs>`.
LayoutLORnGlyphAllowedElements	Elements allowed on `<listOfReactionGlyphs>`.
LayoutLOAddGOAllowedAttribut	Attributes allowed on `<listOfAdditionalGraphicalObjectGlyphs>`.
LayoutLOAddGOAllowedElements	Elements allowed on `<listOfAdditionalGraphicalObjectGlyphs>`.
LayoutLayoutMustHaveDimensions	Layout must have `<dimensions>`.
LayoutLOTextGlyphAllowedAttributes	Attributes allowed on `<listOfTextGlyphs>`.
LayoutLOTextGlyphAllowedElements	Elements allowed on `<listOfTextGlyphs>`.
LayoutGOAllowedCoreElements	Core elements allowed on `<graphicalObject>`.
LayoutGOAllowedCoreAttributes	Core attributes allowed on `<graphicalObject>`.
LayoutGOAllowedElements	Layout elements allowed on `<graphicalObject>`.
LayoutGOAllowedAttributes	Layout attributes allowed on `<graphicalObject>`.
LayoutGOMetaIdRefMustBeIDREF	Layout 'metaidRef' must be IDREF.
LayoutGOMetaIdRefMustReferenceObject	Layout 'metaidRef' must reference existing object.
LayoutGOMustContainBoundingBox	A `<graphicalObject>` must contain a `<boundingBox>`.
LayoutCGAllowedCoreElements	Core elements allowed on `<compartmentGlyph>`.
LayoutCGAllowedCoreAttributes	Core attributes allowed on `<compartmentGlyph>`.
LayoutCGAllowedElements	Layout elements allowed on `<compartmentGlyph>`.
LayoutCGAllowedAttributes	Layout attributes allowed on `<compartmentGlyph>`.
LayoutCGMetaIdRefMustBeIDREF	Layout 'metaidRef' must be IDREF.
LayoutCGMetaIdRefMustReferenceObject	Layout 'metaidRef' must reference existing object.
LayoutCGCompartmentSyntax	CompartmentGlyph 'compartment' must have SIdRef syntax.
LayoutCGCompartmentMustRefComp	CompartmentGlyph compartment must reference existing compartment.
LayoutCGNoDuplicateReferences	CompartmentGlyph cannot reference two objects.
LayoutCGOrderMustBeDouble	CompartmentGlyph order must be float.
LayoutSGAllowedCoreElements	Core elements allowed on `<speciesGlyph>`.
LayoutSGAllowedCoreAttributes	Core attributes allowed on `<speciesGlyph>`.
LayoutSGAllowedElements	Layout elements allowed on `<speciesGlyph>`.
LayoutSGAllowedAttributes	Layout attributes allowed on `<speciesGlyph>`.
LayoutSGMetaIdRefMustBeIDREF	Layout 'metaidRef' must be IDREF.
LayoutSGMetaIdRefMustReferenceObject	Layout 'metaidRef' must reference existing object.
LayoutSGSpeciesSyntax	SpeciesGlyph 'species' must have SIdRef syntax.
LayoutSGSpeciesMustRefSpecies	SpeciesGlyph species must reference existing species.
LayoutSGNoDuplicateReferences	SpeciesGlyph cannot reference two objects.
LayoutRGAllowedCoreElements	Core elements allowed on `<reactionGlyph>`.
LayoutRGAllowedCoreAttributes	Core attributes allowed on `<reactionGlyph>`.
LayoutRGAllowedElements	Layout elements allowed on `<reactionGlyph>`.
LayoutRGAllowedAttributes	Layout attributes allowed on `<reactionGlyph>`.
LayoutRGMetaIdRefMustBeIDREF	Layout 'metaidRef' must be IDREF.
LayoutRGMetaIdRefMustReferenceObject	Layout 'metaidRef' must reference existing object.
LayoutRGReactionSyntax	ReactionGlyph 'reaction' must have SIdRef syntax.
LayoutRGReactionMustRefReaction	ReactionGlyph reaction must reference existing reaction.
LayoutRGNoDuplicateReferences	ReactionGlyph cannot reference two objects.
LayoutLOSpeciesRefGlyphAllowedElements	Allowed elements on ListOfSpeciesReferenceGlyphs
LayoutLOSpeciesRefGlyphAllowedAttribs	Allowed attributes on ListOfSpeciesReferenceGlyphs
LayoutLOSpeciesRefGlyphNotEmpty	ListOfSpeciesReferenceGlyphs not empty
LayoutGGAllowedCoreElements	Core elements allowed on `<generalGlyph>`.
LayoutGGAllowedCoreAttributes	Core attributes allowed on `<generalGlyph>`.
LayoutGGAllowedElements	Layout elements allowed on `<generalGlyph>`.
LayoutGGAllowedAttributes	Layout attributes allowed on `<generalGlyph>`.
LayoutGGMetaIdRefMustBeIDREF	Layout 'metaidRef' must be IDREF.
LayoutGGMetaIdRefMustReferenceObject	Layout 'metaidRef' must reference existing object.
LayoutGGReferenceSyntax	GeneralGlyph 'reference' must have SIdRef syntax.
LayoutGGReferenceMustRefObject	GeneralGlyph 'reference' must reference existing element.
LayoutGGNoDuplicateReferences	GeneralGlyph cannot reference two objects.
LayoutLOReferenceGlyphAllowedElements	Allowed elements on ListOfReferenceGlyphs
LayoutLOReferenceGlyphAllowedAttribs	Allowed attributes on ListOfReferenceGlyphs
LayoutLOSubGlyphAllowedElements
LayoutLOSubGlyphAllowedAttribs	Allowed attributes on ListOfSubGlyphs
LayoutTGAllowedCoreElements	Core elements allowed on `<textGlyph>`.
LayoutTGAllowedCoreAttributes	Core attributes allowed on `<textGlyph>`.
LayoutTGAllowedElements	Layout elements allowed on `<textGlyph>`.
LayoutTGAllowedAttributes	Layout attributes allowed on `<textGlyph>`.
LayoutTGMetaIdRefMustBeIDREF	Layout 'metaidRef' must be IDREF.
LayoutTGMetaIdRefMustReferenceObject	Layout 'metaidRef' must reference existing object.
LayoutTGOriginOfTextSyntax	TextGlyph 'originOfText' must have SIdRef syntax.
LayoutTGOriginOfTextMustRefObject	TextGlyph 'originOfText' must reference existing element.
LayoutTGNoDuplicateReferences	TextGlyph cannot reference two objects.
LayoutTGGraphicalObjectSyntax	TextGlyph 'graphicalObject' must have SIdRef syntax.
LayoutTGGraphicalObjectMustRefObject	TextGlyph 'graphicalObject' must reference existing element.
LayoutTGTextMustBeString	TextGlyph 'text' must be string.
LayoutSRGAllowedCoreElements	Core elements allowed on `<speciesReferenceGlyphgt;`.
LayoutSRGAllowedCoreAttributes	Core attributes allowed on `<speciesReferenceGlyphgt;`.
LayoutSRGAllowedElements	Layout elements allowed on `<speciesReferenceGlyphgt;`.
LayoutSRGAllowedAttributes	Layout attributes allowed on `<speciesReferenceGlyphgt;`.
LayoutSRGMetaIdRefMustBeIDREF	Layout 'metaidRef' must be IDREF.
LayoutSRGMetaIdRefMustReferenceObject	Layout 'metaidRef' must reference existing object.
LayoutSRGSpeciesReferenceSyntax	SpeciesReferenceGlyph 'speciesReference' must have SIdRef syntax.
LayoutSRGSpeciesRefMustRefObject	SpeciesReferenceGlyph 'speciesReference' must reference existing element.
LayoutSRGNoDuplicateReferences	SpeciesReferenceGlyph cannot reference two objects.
LayoutSRGSpeciesGlyphSyntax	SpeciesReferenceGlyph 'speciesGlyph' must have SIdRef syntax.
LayoutSRGSpeciesGlyphMustRefObject	SpeciesReferenceGlyph 'speciesGlyph' must reference existing element.
LayoutSRGRoleSyntax	SpeciesReferenceGlyph 'role' must be string from enumeration.
LayoutREFGAllowedCoreElements	Core elements allowed on `<referenceGlyph>`.
LayoutREFGAllowedCoreAttributes	Core attributes allowed on `<referenceGlyph>`.
LayoutREFGAllowedElements	Layout elements allowed on `<referenceGlyph>`.
LayoutREFGAllowedAttributes	Layout attributes allowed on `<referenceGlyph>`.
LayoutREFGMetaIdRefMustBeIDREF	Layout 'metaidRef' must be IDREF.
LayoutREFGMetaIdRefMustReferenceObject	Layout 'metaidRef' must reference existing object.
LayoutREFGReferenceSyntax	ReferenceGlyph 'reference' must have SIdRef syntax.
LayoutREFGReferenceMustRefObject	ReferenceGlyph 'reference' must reference existing element.
LayoutREFGNoDuplicateReferences	ReferenceGlyph cannot reference two objects.
LayoutREFGGlyphSyntax	ReferenceGlyph 'glyph' must have SIdRef syntax.
LayoutREFGGlyphMustRefObject	ReferenceGlyph 'glyph' must reference existing element.
LayoutREFGRoleSyntax	ReferenceGlyph 'role' must be string.
LayoutPointAllowedCoreElements	Core elements allowed on `<pointgt;`.
LayoutPointAllowedCoreAttributes	Core attributes allowed on `<pointgt;`.
LayoutPointAllowedAttributes	Layout attributes allowed on `<pointgt;`.
LayoutPointAttributesMustBeDouble	Layout 'x', 'y' and 'z' must be float.
LayoutBBoxAllowedCoreElements	Core elements allowed on `<boundingBox>`.
LayoutBBoxAllowedCoreAttributes	Core attributes allowed on `<boundingBox>`.
LayoutBBoxAllowedElements	Layout elements allowed on `<boundingBox>`.
LayoutBBoxAllowedAttributes	Layout attributes allowed on `<boundingBox>`.
LayoutBBoxConsistent3DDefinition	Layout consistent dimensions on a `<boundingBox>`
LayoutCurveAllowedCoreElements	Core elements allowed on `<curve>`.
LayoutCurveAllowedCoreAttributes	Core attributes allowed on `<curve>`.
LayoutCurveAllowedElements	Layout elements allowed on `<curve>`.
LayoutCurveAllowedAttributes	Layout attributes allowed on `<curve>`.
LayoutLOCurveSegsAllowedAttributes	Allowed attributes on ListOfCurveSegments
LayoutLOCurveSegsAllowedElements	Allowed elements on ListOfCurveSegments
LayoutLOCurveSegsNotEmpty	No empty ListOfCurveSegments
LayoutLSegAllowedCoreElements	Core elements allowed on `<lineSegment>`.
LayoutLSegAllowedCoreAttributes	Core attributes allowed on `<lineSegment>`.
LayoutLSegAllowedElements	Layout elements allowed on `<lineSegment>`.
LayoutLSegAllowedAttributes	Layout attributes allowed on `<lineSegment>`.
LayoutCBezAllowedCoreElements	Core elements allowed on `<cubicBezier>`.
LayoutCBezAllowedCoreAttributes	Core attributes allowed on `<cubicBezier>`.
LayoutCBezAllowedElements	Layout elements allowed on `<cubicBezier>`.
LayoutCBezAllowedAttributes	Layout attributes allowed on `<cubicBezier>`.
LayoutDimsAllowedCoreElements	Core elements allowed on `<dimensions>`.
LayoutDimsAllowedCoreAttributes	Core attributes allowed on `<dimensions>`.
LayoutDimsAllowedAttributes	Layout attributes allowed on `<dimensions>`.
LayoutDimsAttributesMustBeDouble	Layout 'width', 'height' and 'depth' must be float.

Category codes associated with SBMLError objects

As discussed above, each SBMLError object contains a value for a category identifier, describing the type of issue that the SBMLError object represents. The category can be retrieved from an SBMLError object using the method SBMLError.getCategory(). The following table lists each possible value and a brief description of its meaning.

As is the case with the error codes, in the libSBML Python language interface, the category identifiers are currently implemented as static integer constants defined in the interface class libsbml.

The following table lists each possible value and a brief description of its meaning.

Enumerator	Meaning
LIBSBML_CAT_SBML	General error not falling into another category below.
LIBSBML_CAT_SBML_L1_COMPAT	Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model from SBML Level 2 to SBML Level 1.
LIBSBML_CAT_SBML_L2V1_COMPAT	Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model to SBML Level 2 Version 1.
LIBSBML_CAT_SBML_L2V2_COMPAT	Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model to SBML Level 2 Version 2.
LIBSBML_CAT_GENERAL_CONSISTENCY	Category of errors that can occur while validating general SBML constructs. With respect to the SBML specification, these concern failures in applying the validation rules numbered 2xxxx in the Level 2 Versions 2–4 and Level 3 Versions 1–2 specifications.
LIBSBML_CAT_IDENTIFIER_CONSISTENCY	Category of errors that can occur while validating symbol identifiers in a model. With respect to the SBML specification, these concern failures in applying the validation rules numbered 103xx in the Level 2 Versions 2–4 and Level 3 Versions 1–2 specifications.
LIBSBML_CAT_UNITS_CONSISTENCY	Category of errors that can occur while validating the units of measurement on quantities in a model. With respect to the SBML specification, these concern failures in applying the validation rules numbered 105xx in the Level 2 Versions 2–4 and Level 3 Versions 1–2 specifications.
LIBSBML_CAT_MATHML_CONSISTENCY	Category of errors that can occur while validating MathML formulas in a model. With respect to the SBML specification, these concern failures in applying the validation rules numbered 102xx in the Level 2 Versions 2–4 and Level 3 Versions 1–2 specifications.
LIBSBML_CAT_SBO_CONSISTENCY	Category of errors that can occur while validating SBO identifiers in a model. With respect to the SBML specification, these concern failures in applying the validation rules numbered 107xx in the Level 2 Versions 2–4 and Level 3 Versions 1–2 specifications.
LIBSBML_CAT_OVERDETERMINED_MODEL	Error in the system of equations in the model: the system is overdetermined, therefore violating a tenet of proper SBML. With respect to the SBML specification, this is validation rule #10601 in the SBML Level 2 Versions 2–4 and Level 3 Versions 1–2 specifications.
LIBSBML_CAT_SBML_L2V3_COMPAT	Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model to SBML Level 2 Version 3.
LIBSBML_CAT_MODELING_PRACTICE	Category of warnings about recommended good practices involving SBML and computational modeling. (These are tests performed by libSBML and do not have equivalent SBML validation rules.)
LIBSBML_CAT_INTERNAL_CONSISTENCY	Category of errors that can occur while validating libSBML's internal representation of SBML constructs. (These are tests performed by libSBML and do not have equivalent SBML validation rules.)
LIBSBML_CAT_SBML_L2V4_COMPAT	Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model to SBML Level 2 Version 4.
LIBSBML_CAT_SBML_L3V1_COMPAT	Category of errors that can only occur during attempted translation from one Level/Version of SBML to another. This particular category applies to errors encountered while trying to convert a model to SBML Level 3 Version 1.

Severity codes associated with SBMLError objects

In libSBML version 5.18.0 there are no additional severity codes beyond those defined by XMLError. They are implemented as static integer constants defined in the interface class libsbml, and have names beginning with LIBSBML_SEV_.

Public Member Functions
def	__init__ (self, args)
	This method has multiple variants; they differ in the arguments they accept. More...

def	getCategory (self)
	Returns the category of this error. More...

def	getCategoryAsString (self)
	Returns a string describing the category of this error. More...

def	getColumn (self)
	Returns the column number in the XML input near where the error, warning or other diagnostic occurred. More...

def	getErrorId (self)
	Returns the identifier of this error. More...

def	getErrorIdOffset (self)
	Returns libSBML's internal numerical offset for the error code associated with this error. More...

def	getLine (self)
	Returns the line number in the XML input near where the error, warning or other diagnostic occurred. More...

def	getMessage (self)
	Returns the message text of this error. More...

def	getPackage (self)
	Returns the SBML Level 3 package extension (if any) that logged this error. More...

def	getSeverity (self)
	Returns the severity of this error. More...

def	getSeverityAsString (self)
	Returns a string describing the severity level of this error. More...

def	getShortMessage (self)
	Returns a brief message for this error. More...

def	getStandardMessage (code)
	Returns a copy of the message string associated with the given predefined XMLError code. More...

def	isError (self)
	Predicate returning `True` or `False` depending on whether this error is a significant error. More...

def	isFatal (self)
	Predicate returning `True` or `False` depending on whether this error is a fatal run-time error. More...

def	isInfo (self)
	Predicate returning `True` or `False` depending on whether this error object is for information purposes only. More...

def	isInternal (self)
	Predicate returning `True` or `False` depending on whether this error resulted from an internal program error. More...

def	isSystem (self)
	Predicate returning `True` or `False` depending on whether this error was generated by the operating system. More...

def	isValid (self)
	Predicate returning `True` or `False` depending on whether this error resulted from a problem or whether it was logged as an unknown error. More...

def	isWarning (self)
	Predicate returning `True` or `False` depending on whether this error object is a warning. More...

def	isXML (self)

def	setColumn (self, column)
	Sets the column number where this error occurred. More...

def	setLine (self, line)
	Sets the line number where this error occurred. More...

Constructor & Destructor Documentation

def libsbml.SBMLError.__init__	(	self,
		args
	)

This method has multiple variants; they differ in the arguments they accept.

__init__(long   errorId=0, long   level, long   version, string details, long   line=0, long   column=0, long   severity, long   category, string package, long   pkgVersion=1)   SBMLError
__init__(long   errorId=0, long   level, long   version, string details, long   line=0, long   column=0, long   severity, long   category, string package)   SBMLError
__init__(long   errorId=0, long   level, long   version, string details, long   line=0, long   column=0, long   severity, long   category)   SBMLError
__init__(long   errorId=0, long   level, long   version, string details, long   line=0, long   column=0, long   severity)   SBMLError
__init__(long   errorId=0, long   level, long   version, string details, long   line=0, long   column=0)   SBMLError
__init__(long   errorId=0, long   level, long   version, string details, long   line=0)   SBMLError
__init__(long   errorId=0, long   level, long   version, string details)   SBMLError
__init__(long   errorId=0, long   level, long   version)   SBMLError
__init__(long   errorId=0, long   level)   SBMLError
__init__(long   errorId=0)   SBMLError
__init__()   SBMLError
__init__(SBMLError orig)   SBMLError

Each variant is described separately below.

Method variant with the following signature:

SBMLError(SBMLError orig)

Copy constructor; creates a copy of this SBMLError.

Parameters

orig	the instance to copy.

Method variant with the following signature:

SBMLError(long errorId = 0, long level = SBML_DEFAULT_LEVEL, long version = SBML_DEFAULT_VERSION, string details = '', long line = 0, long column = 0, long severity = LIBSBML_SEV_ERROR, long category = LIBSBML_CAT_SBML, string package = 'core', long pkgVersion = 1)

Creates a new SBMLError to report that something occurred during SBML processing.

When a libSBML operation on SBML content results in a warning, error or other diagnostic, the issue is reported as an SBMLError object. SBMLError objects have identification numbers to indicate the nature of the exception.These numbers are defined as longeger constants in the interface class libsbml. See the top of this documentation page for a table listing the possible values and their meanings. The argument errorId to this constructor can be (but does not have to be) a value from this set of constants. If it is one of the predefined error identifiers, the SBMLError class assumes the error is a low-level system or SBML layer error and prepends a built-in, predefined error message to any string passed in the argument details to this constructor. In addition, all the predefined error identifiers have associated values for the severity and category codes, and these fields are filled-in using the libSBML defaults for each different error identifier.

If the error identifier errorId is a number greater than 99999, the SBMLError class assumes the error was generated from another part of the software and does not do additional filling in of values beyond the default in the constructor itself. This allows SBMLError to serve as a base class for other errors, such as for user-defined validation rules (see Validator). Callers should fill in all the parameters with suitable values if generating errors with codes greater than 99999 to make maximum use of the SBMLError facilities.

As mentioned above, there are additional constants defined for standard severity and standard category codes, and every predefined error in libSBML has an associated value for severity and category taken from these predefined sets. These constants have symbol names prefixed with LIBSBML_SEV_ and LIBSBML_CAT_, respectively. If the value of errorId is one of the standard error codes, callers do not need to fill in severity and category in a call to this constructor. Conversely, if errorId is not an existing SBML-level error code, callers can use other values for severity and category.

Please see the top of the documentation for SBMLError for a longer discussion of the possible error codes, their meanings, and their applicability to different combinations of Level+Version of SBML.

Parameters

errorId	a long integer, the identification number of the error.
level	the SBML Level of the SBML model.
version	the SBML Version within the Level of the SBML model.
details	a string containing additional details about the error. If the error code in `errorId` is one that is recognized by SBMLError, the given message is appended to a predefined message associated with the given code. If the error code is not recognized, the message is stored as-is as the text of the error.
line	a long integer, the line number at which the error occured.
column	a long integer, the column number at which the error occured.
severity	an integer indicating severity of the error.
category	an integer indicating the category to which the error belongs.
package	the SBML Level package involved.
pkgVersion	the version of the `package`.

Note: Owing to the way that language interfaces are created in libSBML, this documentation may show methods that define default values for parameters with text that has the form parameter = value. This is not to be intepreted as a Python keyword argument; the use of a parameter name followed by an equals sign followed by a value is only meant to indicate a default value if the argument is not provided at all. It is not a keyword in the Python sense.

Member Function Documentation

def libsbml.XMLError.getCategory ( self )

inherited

Returns the category of this error.

getCategory()   long

XMLError defines an enumeration of category codes for the XML layer. Applications that build on XMLError by subclassing it may add their own categories with numbers higher than those in the predefined set of category codes.

Categories can be used to partition errors into distinct groups. Among other things, this can be used to prevent id conflicts by uniquely identifying an XMLError by both id and category.

Returns: the category of this XMLError.

See also: getSeverity(); getCategoryAsString()

def libsbml.XMLError.getCategoryAsString ( self )

inherited

Returns a string describing the category of this error.

getCategoryAsString()   string

XMLError defines an enumeration of category codes for the XML layer. Applications that build on XMLError by subclassing it may add their own categories with numbers higher than those in the predefined set of category codes.

Categories can be used to partition errors into distinct groups. Among other things, this can be used to prevent id conflicts by uniquely identifying an XMLError by both id and category.

Returns: string representing the category of this XMLError.

See also: getCategory(); getSeverityAsString()

def libsbml.XMLError.getColumn ( self )

inherited

Returns the column number in the XML input near where the error, warning or other diagnostic occurred.

getColumn()   long

We say 'near where the problem occurred', because many factors affect how accurate the line/column information ultimately is. For example, sometimes, the underlying XML parsers can only report such information for the parent XML element where an error occurs, and not for the specific point where the problem occurs. In other situations, some parsers report invalid line and/or column numbers altogether. If this occurs, libSBML sets the line and/or column number in the XMLError object to either 0 or the value of the maximum unsigned long integer representable on the platform where libSBML is running. The probability that a true line or column number in an SBML model would equal this value is vanishingly small; thus, if an application encounters these values in an XMLError object, it can assume no valid line/column number could be provided by libSBML in that situation.

Returns: the column number.

See also: getLine()

def libsbml.XMLError.getErrorId ( self )

inherited

Returns the identifier of this error.

getErrorId()   long

Returns: the error code for this error.

See also: getMessage(); getShortMessage(); getCategory(); getSeverity()

def libsbml.XMLError.getErrorIdOffset ( self )

inherited

Returns libSBML's internal numerical offset for the error code associated with this error.

getErrorIdOffset()   long

In the SBML Level 3 package specifications, package validation rules are identified by 5-digit numbers prefixed with the nickname of the package itself—e.g., “comp-10101”, “fbc-20301”, etc. Historically, libSBML reported error codes as pure integers, and some application software systems make decisions based on the numerical values of the error codes. To permit these applications to continue to function in this fashion, libSBML internally continues to maintain error identifiers as pure integers. To handle the possibility that errors may come from package extensions, libSBML uses numerical offsets added to the internal error codes. These offsets add two leading digits to the regular 5-digit error codes; for example, “comp” error codes are stored as 1010101, 1020102, etc. The offset in this case is 1000000. Another package will have the offset 2000000, yet another will have 3000000, etc.

This method returns the integer offset in this error's error code. Calling applications can get the 5-digit package-specific number for a given error code by subtracting the offset from the value reported by getErrorId():

 getErrorId() - getErrorIdOffset()

When libSBML produces error messages, it combines the text string returned by getPackage() with the subtracted value of the error code, to produce a text string of the form “comp-10101”.

See also: getErrorId(); getPackage()

def libsbml.XMLError.getLine ( self )

inherited

Returns the line number in the XML input near where the error, warning or other diagnostic occurred.

getLine()   long

We say 'near where the problem occurred', because many factors affect how accurate the line/column information ultimately is. For example, sometimes, the underlying XML parsers can only report such information for the parent XML element where an error occurs, and not for the specific point where the problem occurs. In other situations, some parsers report invalid line and/or column numbers altogether. If this occurs, libSBML sets the line and/or column number in the XMLError object to either 0 or the value of the maximum unsigned long integer representable on the platform where libSBML is running. The probability that a true line or column number in an SBML model would equal this value is vanishingly small; thus, if an application encounters these values in an XMLError object, it can assume no valid line/column number could be provided by libSBML in that situation.

Returns: the line number.

See also: getColumn()

def libsbml.XMLError.getMessage ( self )

inherited

Returns the message text of this error.

getMessage()   string

The message associated with an error object describes the nature of the problem. The message returned by this method is generally longer and clearer than the message returned by XMLError.getShortMessage(), but not in all cases.

Callers may use XMLError.getCategory() and XMLError.getSeverity() to obtain additional information about the nature and severity of the problem.

Returns: the message text.

See also: getErrorId(); getShortMessage(); getCategory(); getSeverity()

def libsbml.XMLError.getPackage ( self )

inherited

Returns the SBML Level 3 package extension (if any) that logged this error.

getPackage()   string

Each error logged by an libSBML extension for SBML Level 3 packages includes a record of the package that logged it. The field is a simple text string. If the string is empty or has the value 'core', then the error came from libSBML core; otherwise, the string will be the short-form name of the package (e.g., 'comp' for the Hierarchical Model Composition package).

Returns: a string representing the name of the package that logged this error. If the error did not come from a package extension, the value will be the empty string or 'core'.

def libsbml.XMLError.getSeverity ( self )

inherited

Returns the severity of this error.

getSeverity()   long

XMLError defines an enumeration of severity codes for the XML layer. Applications that build on XMLError by subclassing it may add their own severity codes with numbers higher than those in the predefined set of severity codes.

Returns: the severity of this XMLError.

See also: getSeverityAsString(); getCategory()

def libsbml.XMLError.getSeverityAsString ( self )

inherited

Returns a string describing the severity level of this error.

getSeverityAsString()   string

XMLError defines an enumeration of severity codes for the XML layer. Applications that build on XMLError by subclassing it may add their own severity codes with numbers higher than those in the predefined set of severity codes.

Returns: string representing the severity of this XMLError.

See also: getSeverity(); getCategoryAsString()

def libsbml.XMLError.getShortMessage ( self )

inherited

Returns a brief message for this error.

getShortMessage()   string

This is an alternative error message that, in general, is as short as the authors could make it. However, brevity is often inversely proportional to clarity, so this short message may not be sufficiently informative to understand the nature of the error. Calling applications may wish to check XMLError.getMessage() in addition or instead.

Returns: the short error message text.

See also: getErrorId(); getMessage(); getCategory(); getSeverity()

def libsbml.XMLError.getStandardMessage ( code )

inherited

Returns a copy of the message string associated with the given predefined XMLError code.

getStandardMessage(int  code)   string

Parameters

code	the error code whose message is sought; it must be a predefined value from the set of predefined error identifiers.

def libsbml.XMLError.isError ( self )

inherited

Predicate returning True or False depending on whether this error is a significant error.

isError()   bool

This is equivalent to obtaining the severity code from an XMLError object (via XMLError.getSeverity()) and then comparing it to the value LIBSBML_SEV_ERROR from the set of predefined severity codes.

Returns: True if this error is an error, False otherwise.

See also: isInfo(); isWarning(); isFatal()

def libsbml.XMLError.isFatal ( self )

inherited

Predicate returning True or False depending on whether this error is a fatal run-time error.

isFatal()   bool

This is equivalent to obtaining the severity code from an XMLError object (via XMLError.getSeverity()) and then comparing it to the value LIBSBML_SEV_FATAL from the set of predefined severity codes.

Returns: True if this error is a fatal error, False otherwise.

See also: isInfo(); isWarning(); isError()

def libsbml.XMLError.isInfo ( self )

inherited

Predicate returning True or False depending on whether this error object is for information purposes only.

isInfo()   bool

This is equivalent to obtaining the severity code from an XMLError object (via XMLError.getSeverity()) and then comparing it to the value LIBSBML_SEV_INFO from the set of predefined severity codes.

Returns: True if this XMLError is for informational purposes only, False otherwise.

See also: isWarning(); isError(); isFatal()

def libsbml.XMLError.isInternal ( self )

inherited

Predicate returning True or False depending on whether this error resulted from an internal program error.

isInternal()   bool

This is equivalent to obtaining the category identifier from an XMLError object (via XMLError.getCategory()) and then comparing it to the value LIBSBML_CAT_INTERNAL from the set of predefined category codes.

Returns: a boolean indicating whether the error is an internal error.

See also: isSystem(); isXML()

def libsbml.XMLError.isSystem ( self )

inherited

Predicate returning True or False depending on whether this error was generated by the operating system.

isSystem()   bool

This is equivalent to obtaining the category identifier from an XMLError object (via XMLError.getCategory()) and then comparing it to the value LIBSBML_CAT_SYSTEM from the set of predefined category codes.

Returns: boolean indicating whether the error is a system error.

See also: isInternal(); isXML()

def libsbml.XMLError.isValid ( self )

inherited

Predicate returning True or False depending on whether this error resulted from a problem or whether it was logged as an unknown error.

isValid()   bool

This is equivalent to obtaining the error identifier from an XMLError object (via XMLError.getErrorId()) and then comparing it to the value XMLUnknownError or UnknownError from the set of predefined error codes.

Returns: a boolean indicating whether the error is a valid error (True) or whether it is unknown (False).

def libsbml.XMLError.isWarning ( self )

inherited

Predicate returning True or False depending on whether this error object is a warning.

isWarning()   bool

This is equivalent to obtaining the severity code from an XMLError object (via XMLError.getSeverity()) and then comparing it to the value LIBSBML_SEV_WARNING from the set of predefined severity codes.

Returns: True if this error is a warning, False otherwise.

See also: isInfo(); isError(); isFatal()

def libsbml.XMLError.isXML ( self )

inherited

isXML()   bool

Predicate returning True or False depending on whether this error resulted from a problem in the XML input (e.g., an XML syntax error).

This is equivalent to obtaining the category identifier from an XMLError object (via XMLError.getCategory()) and then comparing it to the value LIBSBML_CAT_XML from the set of predefined category codes.

Returns: a boolean indicating whether the error is an XML catetory error.

See also: isInternal(); isSystem()

def libsbml.XMLError.setColumn	(	self,
		column
	)

inherited

Sets the column number where this error occurred.

setColumn(long  column)   int

Parameters

column a long integer, the column number to set.

Returns

integer value indicating success/failure of the function. This particular function only does one thing irrespective of user input or object state, and thus will only return a single value:

LIBSBML_OPERATION_SUCCESS

See also: setLine()

def libsbml.XMLError.setLine	(	self,
		line
	)

inherited

Sets the line number where this error occurred.

setLine(long  line)   int

Parameters

line	a long integer, the line number to set.

Returns

integer value indicating success/failure of the function. This particular function only does one thing irrespective of user input or object state, and thus will only return a single value:

LIBSBML_OPERATION_SUCCESS

See also: setColumn()

Detailed Description

Error codes associated with SBMLError objects

Category codes associated with SBMLError objects

Severity codes associated with SBMLError objects

Public Member Functions

Constructor & Destructor Documentation

Member Function Documentation