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libSBML Python API
5.18.0
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libSBML Python API
5.18.0
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| ▼Nlibsbml | |
| CAlgebraicRule | An SBML algebraic rule representing 0 = f(W) |
| CAssignmentRule | An SBML assignment rule representing x = f(Y) |
| CAssociation | fbc Annotation helper class for “fbc” Version 1 |
| CASTNode | Abstract Syntax Tree (AST) representation of a mathematical expression |
| CASTNodeList | Class for managing lists of ASTNode objects |
| CASTNodeValues_t | Proxy of C++ ASTNodeValues_t class |
| CAutoProperty | Auto-detect Python class getX/setX methods |
| CBindingSiteSpeciesType | multi Extension of MultiSpeciesType to define a binding site |
| CBoundingBox | layout A bounding box for an item in a diagram |
| CCallback | Proxy of C++ Callback class |
| CCobraToFbcConverter | fbc COBRA to SBML Level 3 “fbc” converter |
| CColorDefinition | render Definition of an identifier for an RGBA color value |
| CCompartment | An SBML compartment, where species are located |
| CCompartmentGlyph | layout A glyph for an SBML compartment |
| CCompartmentReference | multi Child of a Compartment that references a different Compartment |
| CCompartmentType | A compartment type in SBML Level 2 |
| CCompBase | comp Convenience class for SBase-derived classes |
| CCompExtension | comp Base extension class for the package |
| CCompFlatteningConverter | comp 'Flattens' a model, removing composition |
| CCompModelPlugin | comp Extension of Model |
| CCompPkgNamespaces | comp SBMLNamespaces extension for the package |
| CCompSBasePlugin | comp Extension of SBase |
| CCompSBMLDocumentPlugin | comp Extension of SBMLDocument |
| CConstraint | An SBML constraint, for stating validity assumptions |
| CConversionOption | A single configuration setting for an SBML converter |
| CConversionProperties | Set of configuration option values for a converter |
| CCubicBezier | layout A Cubic Bézier smooth curve |
| CCurve | layout A curve connecting elements in a diagram |
| CCVTerm | A MIRIAM-compliant controlled vocabulary term |
| CCVTermList | Class for managing lists of CVTerm objects |
| CDate | A MIRIAM-compliant date representation |
| CDateList | Class for managing lists of Date objects |
| CDefaultTerm | qual The default result of a Transition |
| CDefaultValues | render Encoding of default values |
| CDefinitionURLRegistry | Registry of all libSBML SBML DefinitionURLs |
| CDelay | A delay on the time of execution of an SBML event |
| CDeletion | comp Deletion of an object from a submodel |
| CDimensions | layout Spatial dimensions of a 2D or 3D shape |
| CElementFilter | Base class for filter functions |
| CEllipse | render Graphical representation of an ellipse |
| CEvent | A discontinuous SBML event |
| CEventAssignment | An assignment to a variable by an SBML event |
| CExternalModelDefinition | comp A reference to an externally-defined model |
| CFbcAnd | fbc An “and” relationship for gene products |
| CFbcAssociation | fbc Base class for FbcAnd, FbcOr, and GeneProductRef |
| CFbcExtension | fbc Base extension class for the “fbc” package |
| CFbcModelPlugin | fbc Extension of Model |
| CFbcOr | fbc An “or” relationship for gene products |
| CFbcPkgNamespaces | fbc SBMLNamespaces extension for the package |
| CFbcReactionPlugin | fbc Extension of Reaction by the “fbc” package |
| CFbcSBMLDocumentPlugin | fbc Extension of SBMLDocument for the “fbc” package |
| CFbcSpeciesPlugin | fbc Extension of Species |
| CFbcToCobraConverter | fbc SBML Level 3 “fbc” to COBRA converter |
| CFbcV1ToV2Converter | fbc Convert “fbc” Version 1 models to Version 2 |
| CFbcV2ToV1Converter | fbc Convert “fbc” Version 2 models to Version 1 |
| Cfloat_array | Proxy of C++ float_array class |
| CFluxBound | fbc Max or min value for a reaction flux |
| CFluxObjective | fbc An objective function for a flux |
| CFunctionDefinition | A user-defined function in an SBML model |
| CFunctionTerm | qual A function term |
| CGeneAssociation | fbc Annotation helper class for “fbc” Version 1 |
| CGeneProduct | fbc Association of a gene product with a Reaction |
| CGeneProductAssociation | fbc Association between gene products and reactions |
| CGeneProductRef | fbc Reference to a gene product of a reaction |
| CGeneralGlyph | layout A glyph for miscellaneous items |
| CGlobalRenderInformation | render Render information stored in a ListOfLayouts |
| CGlobalStyle | render A style that can be associated with a layout |
| CGradientBase | render Abstract base class for linear and radial gradients |
| CGradientStop | render A color at a certain location in a color gradient |
| CGraphicalObject | layout Base class of objects that store layouts |
| CGraphicalPrimitive1D | render Base class for graphical primitives implementing 1D attributes |
| CGraphicalPrimitive2D | render Base class for graphical primitives implementing 2D attributes |
| CGroup | groups Representation of a group of SBML components |
| CGroupsExtension | groups Base extension class for the package |
| CGroupsModelPlugin | groups Extension of Model |
| CGroupsPkgNamespaces | groups SBMLNamespaces extension for the package |
| CImage | render Representation of images |
| CInitialAssignment | An SBML initial assignment, evaluated once only |
| CInput | qual The input to a QualitativeSpecies |
| CInSpeciesTypeBond | multi Defines a bond within a MultiSpeciesType |
| Cint_array | Proxy of C++ int_array class |
| CIntraSpeciesReaction | multi A subclass of Reaction for changes of an internal species bond |
| CKineticLaw | The rate expression for an SBML reaction |
| CL3ParserSettings | Controls the behavior of the Level 3 formula parser |
| CLayout | layout The layout of a diagram of an SBML model |
| CLayoutExtension | layout Base extension class for the package |
| CLayoutModelPlugin | layout Extension of Model |
| CLayoutPkgNamespaces | layout SBMLNamespaces extension for the package |
| CLayoutSpeciesReferencePlugin | layout Extension of SpeciesReference |
| CLinearGradient | render Representation of a linear gradient |
| CLineEnding | render Decoration element for the start and/or end of curves |
| CLineSegment | layout Representation of a line |
| CListOf | Parent class for libSBML's 'ListOfXYZ' classes |
| CListOfColorDefinitions | render A list of ColorDefinition objects |
| CListOfCompartmentGlyphs | layout A list of CompartmentGlyph objects |
| CListOfCompartmentReferences | multi A list of CompartmentReference objects |
| CListOfCompartments | A list of Compartment objects |
| CListOfCompartmentTypes | A list of CompartmentType objects |
| CListOfConstraints | A list of Constraint objects |
| CListOfCurveElements | render A list of curve elements |
| CListOfDeletions | comp A list of Deletion objects |
| CListOfDrawables | render A list of Transformation2D objects |
| CListOfEventAssignments | A list of EventAssignment objects |
| CListOfEvents | A list of Event objects |
| CListOfExternalModelDefinitions | comp A list of ExternalModelDefinition objects |
| CListOfFbcAssociations | fbc A list of FbcAssociation objects |
| CListOfFluxBounds | fbc A list of FluxBound objects |
| CListOfFluxObjectives | fbc A list of FluxObjective objects |
| CListOfFunctionDefinitions | A list of FunctionDefinition objects |
| CListOfFunctionTerms | qual A list of FunctionTerm objects |
| CListOfGeneAssociations | fbc A list of GeneAssociation objects |
| CListOfGeneProducts | fbc A list of GeneProduct objects |
| CListOfGlobalRenderInformation | render A list of GlobalRenderInformation objects |
| CListOfGlobalStyles | render A list of GlobalStyle objects |
| CListOfGradientDefinitions | render A list of GradientBase objects |
| CListOfGradientStops | render A list of one or more GradientStop objects |
| CListOfGraphicalObjects | layout A list of GraphicalObject objects |
| CListOfGroups | groups A list of Group objects |
| CListOfInitialAssignments | A list of InitialAssignment objects |
| CListOfInputs | qual A list of Input objects |
| CListOfInSpeciesTypeBonds | multi A list of InSpeciesTypeBond objects |
| CListOfLayouts | layout A list of Layout objects |
| CListOfLineEndings | render A list of LineEnding objects |
| CListOfLineSegments | layout A list of LineSegment objects |
| CListOfLocalParameters | A list of LocalParameter objects |
| CListOfLocalRenderInformation | render A list of LocalRenderInformation objects |
| CListOfLocalStyles | render A list of LocalStyle objects |
| CListOfMembers | groups A list of Member objects |
| CListOfModelDefinitions | comp A list of ModelDefinition objects |
| CListOfMultiSpeciesTypes | multi A list of MultiSpeciesType objects |
| CListOfObjectives | fbc A list of Objective objects |
| CListOfOutputs | qual A list of Output objects |
| CListOfOutwardBindingSites | multi A list of OutwardBindingSite objects |
| CListOfParameters | A list of Parameter objects |
| CListOfPorts | comp A list of Port objects |
| CListOfPossibleSpeciesFeatureValues | multi A list of PossibleSpeciesFeatureValue objects |
| CListOfQualitativeSpecies | qual A list of QualitativeSpecies objects |
| CListOfReactionGlyphs | layout A list of ReactionGlyph objects |
| CListOfReactions | A list of Reaction objects |
| CListOfReferenceGlyphs | layout A list of ReferenceGlyph objects |
| CListOfReplacedElements | comp A list of ReplacedElement objects |
| CListOfRules | A list of Rule objects |
| CListOfSpecies | A list of Species objects |
| CListOfSpeciesFeatures | multi A list of SpeciesFeature objects |
| CListOfSpeciesFeatureTypes | multi A list of SpeciesFeatureType objects |
| CListOfSpeciesFeatureValues | multi A list of SpeciesFeatureValue objects |
| CListOfSpeciesGlyphs | layout A list of SpeciesGlyph objects |
| CListOfSpeciesReferenceGlyphs | layout A list of SpeciesReferenceGlyph objects |
| CListOfSpeciesReferences | A list of SpeciesReference objects |
| CListOfSpeciesTypeComponentIndexes | multi A list of SpeciesTypeComponentIndex objects |
| CListOfSpeciesTypeComponentMapInProducts | multi A list of SpeciesTypeComponentMapInProduct objects |
| CListOfSpeciesTypeInstances | multi A list of SpeciesTypeInstance objects |
| CListOfSpeciesTypes | A list of SpeciesType objects |
| CListOfSubmodels | comp A list of Submodel objects |
| CListOfTextGlyphs | layout A list of TextGlyph objects |
| CListOfTransitions | qual A list of Transition objects |
| CListOfUnitDefinitions | A list of UnitDefinition objects |
| CListOfUnits | A list of Unit objects |
| CLocalParameter | A parameter inside an SBML reaction definition |
| CLocalRenderInformation | render Rendering information stored in Layouts |
| CLocalStyle | render Style information object used in LocalRenderInformation |
| CMember | groups The Member class defines what objects are parts of a Group |
| CModel | An SBML model |
| CModelCreator | MIRIAM-compliant data about a model's creator |
| CModelCreatorList | Class for managing lists of ModelCreator objects |
| CModelDefinition | comp A model used in model composition |
| CModelHistory | MIRIAM-compliant data about a model's history |
| CModifierSpeciesReference | A reference to an SBML modifier species |
| CMultiASTPlugin | multi Extension of ASTBasePlugin |
| CMultiCompartmentPlugin | multi Extension of Compartment for the 'multi' package |
| CMultiExtension | multi Base extension class for the package |
| CMultiListOfReactionsPlugin | multi Extension of ListOfReactions for the 'multi' package |
| CMultiModelPlugin | multi Extension of Model |
| CMultiPkgNamespaces | multi SBMLNamespaces extension for the package |
| CMultiSBMLDocumentPlugin | multi Extension of SBMLDocument for the 'multi' package |
| CMultiSimpleSpeciesReferencePlugin | multi Extension of SimpleSpeciesReference for the 'multi' package |
| CMultiSpeciesPlugin | multi Extension of Species for the 'multi' package |
| CMultiSpeciesReferencePlugin | multi Extension of SpeciesReference for the 'multi' package |
| CMultiSpeciesType | multi A type of Species in SBML Level 3 'multi' |
| CObjective | fbc An objective function |
| Costream | Wrapper class for the C++ standard stream ostream |
| Costringstream | Wrapper class for the C++ standard file stream ofstream |
| COutput | qual The output from a QualitativeSpecies |
| COutwardBindingSite | multi Defines a outward-facing binding site for a MultiSpeciesType |
| CParameter | An SBML parameter: a named symbol with a value |
| CPoint | layout Representation of a point |
| CPolygon | render Representation of a Polygon |
| CPort | comp An interface to be used in composition |
| CPossibleSpeciesFeatureValue | multi Defines one value of a SpeciesFeature |
| CPriority | The priority of execution of an SBML event |
| CPythonAPI2Warning | Custom warning class for warnings generated by libSBML Python API2 |
| CQualExtension | qual Base extension class for the package |
| CQualitativeSpecies | qual Extension of Species |
| CQualModelPlugin | qual Extension of Model |
| CQualPkgNamespaces | qual SBMLNamespaces extension for the package |
| CRadialGradient | render Representation of a radial gradient |
| CRateRule | An SBML rate rule representing dx/dt = f(Y) |
| CRDFAnnotationParser | MIRIAM-compliant RDF annotation reader/writer |
| CReaction | An SBML reaction between species in an SBML model |
| CReactionGlyph | layout A glyph for an SBML reaction |
| CRectangle | render Representation of a rectangle |
| CReferenceGlyph | layout Connection between an object and a glyph |
| CRelAbsVector | render Vectors with an absolute value and a relative value |
| CRenderCubicBezier | render Representation of cubic Bezier curves |
| CRenderCurve | render Representation of curves |
| CRenderExtension | render Base extension class for the package |
| CRenderGraphicalObjectPlugin | render The Render extension of the layout GraphicalObject class |
| CRenderGroup | render A group of graphical primitives creating a composite |
| CRenderInformationBase | render Abstract base class for local and global rendering information |
| CRenderLayoutPlugin | render LibSBML implementation for the extension to the Layout class by the Render extension |
| CRenderListOfLayoutsPlugin | render A list of layout objects used by the 'render' extension |
| CRenderPkgNamespaces | Set of SBML Level + Version + namespace triples |
| CRenderPoint | render A point with both absolute and relative values |
| CReplacedBy | comp Indicates an object replaced by another |
| CReplacedElement | comp Indicates an object replaces another |
| CReplacing | comp Convenience class |
| CRule | Parent class for SBML rules in libSBML |
| CSBase | SBML's SBase class, base class of most SBML objects |
| CSBaseList | Class for managing lists of SBase objects |
| CSBasePlugin | Base class for extending SBML objects in packages |
| CSBaseRef | comp Base class for references to objects |
| CSBMLConverter | Base class for SBML converters |
| CSBMLConverterRegistry | Registry of all libSBML SBML converters |
| CSBMLDocument | Overall SBML container object |
| CSBMLDocumentPlugin | Base class for extending SBMLDocument in packages |
| CSBMLError | An error, warning or other diagnostic |
| CSBMLErrorLog | Log of diagnostics reported during processing |
| CSBMLExtension | Base class for SBML Level 3 package plug-ins |
| CSBMLExtensionException | Exception used by package extensions |
| CSBMLExtensionRegistry | Registry where package extensions are registered |
| CSBMLFileResolver | comp Resolves documents stored on a file system |
| CSBMLFunctionDefinitionConverter | Converter to expand user-defined functions in-line |
| CSBMLIdConverter | Converter for replacing object identifiers |
| CSBMLInferUnitsConverter | Converter for inferring and setting parameter units |
| CSBMLInitialAssignmentConverter | Converter that removes SBML initial assignments |
| CSBMLLevel1Version1Converter | Whole-document SBML Level/Version converter |
| CSBMLLevelVersionConverter | Whole-document SBML Level/Version converter |
| CSBMLLocalParameterConverter | Converter to turn local parameters into global ones |
| CSBMLNamespaces | Set of SBML Level + Version + namespace triples |
| CSBMLNamespacesList | Class for managing lists of SBMLNamespaces objects |
| CSBMLReactionConverter | Converter to replace reactions with SBML rate rules |
| CSBMLReader | File and text-string SBML reader |
| CSBMLResolver | comp Base class for SBML resolvers |
| CSBMLResolverRegistry | comp Registry of all SBML resolvers |
| CSBMLRuleConverter | Converter that sorts SBML rules and assignments |
| CSBMLStripPackageConverter | Converter that removes SBML Level 3 packages |
| CSBMLUnitsConverter | Converts a model's existing units to SI units |
| CSBMLUri | comp Utility class for handling URIs |
| CSBMLValidator | Base class for SBML validators |
| CSBMLWriter | File and text-string SBML writer |
| CSBO | Facilities for using the Systems Biology Ontology |
| CSimpleSpeciesReference | Abstract class for references to species in reactions |
| CSpecies | An SBML species – a pool of entities |
| CSpeciesFeature | multi Defines a feature of a multi Species |
| CSpeciesFeatureType | multi Defines a template for referencing SpeciesFeature objects |
| CSpeciesFeatureValue | multi Defines a particular value for a SpeciesFeature |
| CSpeciesGlyph | layout A glyph for an SBML species |
| CSpeciesReference | A reference to an SBML species in a reaction |
| CSpeciesReferenceGlyph | layout A glyph for an SBML species reference |
| CSpeciesType | A species type in SBML Level 2 |
| CSpeciesTypeComponentIndex | multi Identifies a component within a MultiSpeciesType |
| CSpeciesTypeComponentMapInProduct | multi Distinguishes between components in reactants versus products |
| CSpeciesTypeInstance | multi Allows construction of structured MultiSpeciesType objects |
| CStoichiometryMath | Stochiometry expressions in SBML Level 2 reactions |
| CStringSet | Proxy of C++ std::set<(std::string)> class |
| CStyle | render Abstract base class for local and global styles |
| CSubListOfSpeciesFeatures | multi Defines a set of SpeciesFeature objects |
| CSubmodel | comp A model instance inside another model |
| CSyntaxChecker | Methods for checking the validity of SBML identifiers |
| CText | render Representation of text elements |
| CTextGlyph | layout A glyph for a text label |
| CTransformation | render Implementation of a 3D transformation matrix |
| CTransformation2D | render Implementation of a 2D transformation matrix |
| CTransition | qual A transition of a QualitativeSpecies |
| CTrigger | The trigger expression for an SBML event |
| CUnit | A single unit referenced in an SBML unit definition |
| CUnitDefinition | A definition of a unit used in an SBML model |
| CXMLAttributes | A list of attributes on an XML element |
| CXMLError | XML-level errors, warnings and other diagnostics |
| CXMLErrorLog | Log of diagnostics reported during XML processing |
| CXMLInputStream | An interface to an XML input stream |
| CXMLNamespaces | An XML Namespace |
| CXMLNode | A node in libSBML's XML document tree |
| CXMLOutputStream | Interface to an XML output stream |
| CXMLOwningOutputFileStream | Proxy of C++ XMLOwningOutputFileStream class |
| CXMLOwningOutputStringStream | Proxy of C++ XMLOwningOutputStringStream class |
| CXMLToken | A token in an XML stream |
| CXMLTriple | A qualified XML name |
| CSBMLReader | File and text-string SBML reader |
| CSBMLWriter | File and text-string SBML writer |
