All Differences Index

All Differences

Removals

Additions

Changes

Bold is New, ~~strike~~ is deleted

A B C D E F G H I K L M N O P Q R S T U V W X Y Z TOP
AbstractRenderPlugin
AbstractSBase
AbstractSBasePlugin
AbstractTreeNode
accept
  type (SBase) in org.sbml.jsbml.KineticLaw
  type (SBase) in org.sbml.jsbml.Model
  type (SBase) in org.sbml.jsbml.ext.comp.CompModelPlugin
  type (SBase) in org.sbml.jsbml.ext.spatial.SpatialModelPlugin
addAdditionalGraphicalObject (GraphicalObject)
addAllChangeListeners
  type (Collection<TreeNodeChangeListener>, boolean) in org.sbml.jsbml.AbstractTreeNode
  type (Collection<TreeNodeChangeListener>, boolean) in org.sbml.jsbml.util.TreeNodeWithChangeSupport
addCVTerm
addPlugin
  type (String, SBasePlugin) in org.sbml.jsbml.AbstractSBase
  type (String, SBasePlugin) in org.sbml.jsbml.SBase
addQualitativeSpecies (QualitativeSpecies)
addReferenceGlyph (ReferenceGlyph)
addSampledField (SampledField)
addSpecies (QualitativeSpecies)
~~addSpeciesReferenceGlyph~~ (ReferenceGlyph)
addTransition (Transition)
AdvectionCoefficient
  org.sbml.jsbml.ext.spatial
  AdvectionCoefficient (int, int) constructor
  AdvectionCoefficient (String, int, int) constructor
all_L3_namespaces
AnalyticGeometry
AnalyticVolume
AnalyticVolume.FunctionKind
~~AnalyticVolume.FunctionType~~
Annotation
annotationNameSpaces
ArraysParser
ASTNode
ASTNodeCompiler

B A C D E F G H I K L M N O P Q R S T U V W X Y Z TOP
base
BASE_UNIT_SUFFIX
~~BasePoint1~~
~~BasePoint2~~
BoundaryCondition
BoundaryCondition.BoundaryKind
~~BoundaryCondition.Type~~
BoundingBox
~~BuildToyModelTest~~

C A B D E F G H I K L M N O P Q R S T U V W X Y Z TOP
checkBrackets (ASTNode)
checkDenominatorBrackets (ASTNode)
clone
  type () in org.sbml.jsbml.ext.comp.ModelDefinition
  type () in org.sbml.jsbml.ext.fbc.ListOfObjectives
  type () in org.sbml.jsbml.ext.groups.ListOfMemberConstraint
  type () in org.sbml.jsbml.ext.qual.QualitativeModel
  type () in org.sbml.jsbml.ext.render.AbstractRenderPlugin
  type () in org.sbml.jsbml.util.ListOfWithName
  type () in org.sbml.jsbml.util.ValuePair
~~Coefficient~~
~~coefficientCheck~~ ()
ColorDefinition
Compartment
complementA
complementB
CompModelPlugin
compression
CompSBasePlugin
CompSBMLDocumentPlugin
containsQualitativeSpecies (QualitativeSpecies)
containsUndeclaredUnits
  type () in org.sbml.jsbml.Compartment
  type () in org.sbml.jsbml.Species
coordinate
CoordinateComponent
~~coordinateIndex~~
CoordinateKind
CoordinateReference
coordinateReference1
coordinateReference2
createGeneralGlyph
  type () in org.sbml.jsbml.ext.layout.GeneralGlyph
  type (String) in org.sbml.jsbml.ext.layout.GeneralGlyph
createGroup
  type ~~(String[])~~ in org.sbml.jsbml.ext.groups.GroupsModelPlugin
  type (String) in org.sbml.jsbml.ext.groups.GroupsModelPlugin
  type (String, String[]) in org.sbml.jsbml.ext.groups.GroupsModelPlugin
createMemberWithIdRef
  type (String) in org.sbml.jsbml.ext.groups.Group
  type (String, String) in org.sbml.jsbml.ext.groups.Group
createMemberWithMetaIdRef
  type (String) in org.sbml.jsbml.ext.groups.Group
  type (String, String) in org.sbml.jsbml.ext.groups.Group
createMixedGeometry
  type () in org.sbml.jsbml.ext.spatial.Geometry
  type (String) in org.sbml.jsbml.ext.spatial.Geometry
createPluginFor (SBase)
createPosition
  type () in org.sbml.jsbml.ext.layout.BoundingBox
  type (double, double, double) in org.sbml.jsbml.ext.layout.BoundingBox
createQualitativeSpecies
  type () in org.sbml.jsbml.ext.qual.QualitativeModel
  type ~~(String)~~ in org.sbml.jsbml.ext.qual.QualitativeModel
  type ~~(String, String, boolean)~~ in org.sbml.jsbml.ext.qual.QualitativeModel
  type ~~(String, String, Species)~~ in org.sbml.jsbml.ext.qual.QualitativeModel
  type ~~(String, Compartment)~~ in org.sbml.jsbml.ext.qual.QualitativeModel
createReferenceGlyph ()
createReferenceGlyphForList
  type () in org.sbml.jsbml.ext.layout.GeneralGlyph
  type (String) in org.sbml.jsbml.ext.layout.GeneralGlyph
createSampledField
  type () in org.sbml.jsbml.ext.spatial.Geometry
  type (String) in org.sbml.jsbml.ext.spatial.Geometry
~~createSpeciesReferenceGlyph~~ (String, String)
createTransition
  type () in org.sbml.jsbml.ext.qual.QualitativeModel
  type ~~(String)~~ in org.sbml.jsbml.ext.qual.QualitativeModel
  type ~~(String, Input, Output)~~ in org.sbml.jsbml.ext.qual.QualitativeModel
CSGPrimitive
CSGPrimitive.PrimitiveKind
CSGSetOperator
~~CSGSetOperator.OperationType~~
CSGSetOperator.SetOperation
CubicBezier
~~Curve~~
CurveSegment
CVTerm
CVTermTests

D A B C E F G H I K L M N O P Q R S T U V W X Y Z TOP
data
DiffusionCoefficient
  org.sbml.jsbml.ext.spatial
  DiffusionCoefficient (int, int) constructor
  DiffusionCoefficient (String, int, int) constructor
DiffusionCoefficient.DiffusionKind
diffusionKind
DomainType

E A B C D F G H I K L M N O P Q R S T U V W X Y Z TOP
Ellipse
~~End~~
equals
  type (Object) in org.sbml.jsbml.ext.fbc.FluxBound
  type (Object) in org.sbml.jsbml.ext.fbc.FluxObjective
  type (Object) in org.sbml.jsbml.ext.fbc.Objective
  type (Object) in org.sbml.jsbml.ext.groups.Group
  type (Object) in org.sbml.jsbml.ext.groups.ListOfMemberConstraint
  type (Object) in org.sbml.jsbml.ext.groups.Member
  type (Object) in org.sbml.jsbml.ext.groups.MemberConstraint
  type (Object) in org.sbml.jsbml.ext.render.ColorDefinition
  type (Object) in org.sbml.jsbml.ext.render.Ellipse
  type (Object) in org.sbml.jsbml.ext.render.GlobalRenderInformation
  type (Object) in org.sbml.jsbml.ext.render.GradientBase
  type (Object) in org.sbml.jsbml.ext.render.GradientStop
  type (Object) in org.sbml.jsbml.ext.render.GraphicalPrimitive1D
  type (Object) in org.sbml.jsbml.ext.render.GraphicalPrimitive2D
  type (Object) in org.sbml.jsbml.ext.render.Image
  type (Object) in org.sbml.jsbml.ext.render.LinearGradient
  type (Object) in org.sbml.jsbml.ext.render.LocalRenderInformation
  type (Object) in org.sbml.jsbml.ext.render.LocalStyle
  type (Object) in org.sbml.jsbml.ext.render.RenderInformationBase
  type (Object) in org.sbml.jsbml.ext.render.Style
  type (Object) in org.sbml.jsbml.ext.render.Transformation
  type (Object) in org.sbml.jsbml.ext.spatial.AdvectionCoefficient
  type (Object) in org.sbml.jsbml.ext.spatial.DiffusionCoefficient
  type ~~(Object)~~ in org.sbml.jsbml.util.ValuePair
Event

F A B C D E G H I K L M N O P Q R S T U V W X Y Z TOP
FBCModelPlugin
~~FBCWritingTest~~
filterCVTerms
  type (Qualifier, boolean, String[]) in org.sbml.jsbml.AbstractSBase
  type (Qualifier, boolean, String[]) in org.sbml.jsbml.SBase
filterResources
  type ~~(String)~~ in org.sbml.jsbml.CVTerm
  type (String[]) in org.sbml.jsbml.CVTerm
  type (Pattern[]) in org.sbml.jsbml.CVTerm
FindUnitsCompiler
fireNodeAddedEvent ()
fireNodeRemovedEvent ()
firePropertyChange
  type (String, Object, Object) in org.sbml.jsbml.AbstractSBase
  type (String, Object, Object) in org.sbml.jsbml.ext.AbstractSBasePlugin
FluxBound
FluxObjective
FormulaCompiler
FormulaCompilerLibSBML
FormulaParser
FormulaParserConstants
FormulaParserLL3
FormulaParserLL3Constants
formulaToString (ASTNode, FormulaCompiler)

G A B C D E F H I K L M N O P Q R S T U V W X Y Z TOP
GeneralGlyph
Geometry
  org.sbml.jsbml.ext.spatial
  Geometry (String, int, int) constructor
Geometry.GeometryKind
GeometryDefinition
getActivator ()
getAllowsChildren
  type () in org.sbml.jsbml.ext.qual.QualitativeModel
  type () in org.sbml.jsbml.ext.render.ColorDefinition
  type () in org.sbml.jsbml.ext.render.GraphicalPrimitive1D
  type () in org.sbml.jsbml.ext.render.Transformation
getBoundaryMaximum ()
getBoundaryMinimum ()
getChild (int)
getChildAt
  type (int) in org.sbml.jsbml.ext.qual.QualitativeModel
  type (int) in org.sbml.jsbml.ext.render.ColorDefinition
  type (int) in org.sbml.jsbml.ext.render.GraphicalPrimitive1D
  type (int) in org.sbml.jsbml.ext.render.Style
  type (int) in org.sbml.jsbml.ext.render.Transformation
getChildCount
  type () in org.sbml.jsbml.ext.qual.QualitativeModel
  type () in org.sbml.jsbml.ext.render.ColorDefinition
  type () in org.sbml.jsbml.ext.render.GraphicalPrimitive1D
  type () in org.sbml.jsbml.ext.render.Transformation
getChildElement (String, String)
getChildElements (String, String)
getComplementA ()
getComplementB ()
~~getComponentType~~ ()
getCompression ()
getCoordinate ()
~~getCoordinateIndex~~ ()
getCoordinateReference1 ()
getCoordinateReference2 ()
getCoordinateSystem ()
getData ()
getDataString ()
getDataType ()
getDiffusionKind ()
~~getDomain~~ ()
getDomainType ()
getElementName ()
getElementNamespace ()
~~getEncoding~~ ()
getEventAssignment (String)
getExtensionCount
  type () in org.sbml.jsbml.AbstractSBase
  type () in org.sbml.jsbml.SBase
getExternalModelDefinition
  type (int) in org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin
  type (String) in org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin
getFluxBoundCount ()
getFunctionType ()
getGroup
  type () in org.sbml.jsbml.ext.render.LineEnding
  type () in org.sbml.jsbml.ext.render.Style
getIdManager (SBase)
~~getImageData~~ ()
getInterpolation ()
~~getInterpolationType~~ ()
getIsActive ()
getListOfQualitativeSpecies ()
getListOfSampledFields ()
getListOfTransitions ()
~~getMaximum~~ ()
getMemberConstraintCount ()
~~getMinimum~~ ()
getModel ()
getModelDefinition
  type (int) in org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin
  type (String) in org.sbml.jsbml.ext.comp.CompSBMLDocumentPlugin
getNamespaceFor (int, int, int)
getNumChildren ()
getNumCompartmentGlyphs ()
getNumExternalModelDefinitions ()
getNumFluxBound ()
getNumGroups ()
getNumLayouts ()
getNumMemberConstraints ()
getNumMembers ()
getNumModelDefinitions ()
getNumObjective ()
getNumPorts ()
getNumReactionGlyphs ()
getNumReplacedElements ()
getNumSpeciesGlyphs ()
getNumSubmodels ()
getNumTextGlyphs ()
getObjectiveCount ()
getOperationType ()
getPackageName
  type () in org.sbml.jsbml.ext.qual.QualitativeModel
  type () in org.sbml.jsbml.xml.parsers.RenderParser
getPackageNamespaces ()
getParent ()
getParentSBMLObject ()
getPolygonType ()
getPort
  type (int) in org.sbml.jsbml.ext.comp.CompModelPlugin
  type (String) in org.sbml.jsbml.ext.comp.CompModelPlugin
getPrefix ()
getPrimitiveType ()
getProcess ()
getQualitativeSpecies
  type ~~(int)~~ in org.sbml.jsbml.ext.qual.QualitativeModel
  type ~~(String)~~ in org.sbml.jsbml.ext.qual.QualitativeModel
getReadingParsers ()
getReplacedElement
  type (int) in org.sbml.jsbml.ext.comp.CompSBasePlugin
  type (String) in org.sbml.jsbml.ext.comp.CompSBasePlugin
getSampledField ()
getSideProduct ()
getSideSubstrate ()
~~getSpatialDimension~~ ()
getSpatialDimensions ()
getSpeciesReferenceGlyph (String)
getStrokeWidth ()
getSubmodel
  type (int) in org.sbml.jsbml.ext.comp.CompModelPlugin
  type (String) in org.sbml.jsbml.ext.comp.CompModelPlugin
getTerm ()
getTransition
  type ~~(int)~~ in org.sbml.jsbml.ext.qual.QualitativeModel
  type ~~(String)~~ in org.sbml.jsbml.ext.qual.QualitativeModel
getTriple ()
getType
  type () in org.sbml.jsbml.ext.spatial.BoundaryCondition
  type () in org.sbml.jsbml.ext.spatial.CoordinateComponent
getUnits ()
getUnitsInstance ()
getURI ()
getVariable ()
getVariableInstance ()
getWritingParsers ()
GlobalRenderInformation
GradientBase
GradientStop
GraphicalPrimitive1D
  org.sbml.jsbml.ext.render
  GraphicalPrimitive1D (int, int) constructor
GraphicalPrimitive2D
  org.sbml.jsbml.ext.render
  GraphicalPrimitive2D (int, int) constructor
GraphicalPrimitive2D.FillRule
Group
  org.sbml.jsbml.ext.groups
  ~~Group~~
group
GroupsModelPlugin

H A B C D E F G I K L M N O P Q R S T U V W X Y Z TOP
hashCode
  type () in org.sbml.jsbml.ext.fbc.FluxBound
  type () in org.sbml.jsbml.ext.fbc.FluxObjective
  type () in org.sbml.jsbml.ext.fbc.Objective
  type () in org.sbml.jsbml.ext.groups.Group
  type () in org.sbml.jsbml.ext.groups.Member
  type () in org.sbml.jsbml.ext.groups.MemberConstraint
  type () in org.sbml.jsbml.ext.layout.LayoutModelPlugin
  type () in org.sbml.jsbml.ext.render.ColorDefinition
  type () in org.sbml.jsbml.ext.render.Ellipse
  type () in org.sbml.jsbml.ext.render.GlobalRenderInformation
  type () in org.sbml.jsbml.ext.render.GradientBase
  type () in org.sbml.jsbml.ext.render.GradientStop
  type () in org.sbml.jsbml.ext.render.GraphicalPrimitive1D
  type () in org.sbml.jsbml.ext.render.GraphicalPrimitive2D
  type () in org.sbml.jsbml.ext.render.Image
  type () in org.sbml.jsbml.ext.render.LinearGradient
  type () in org.sbml.jsbml.ext.render.LocalRenderInformation
  type () in org.sbml.jsbml.ext.render.LocalStyle
  type () in org.sbml.jsbml.ext.render.RenderInformationBase
  type () in org.sbml.jsbml.ext.render.Style
  type () in org.sbml.jsbml.ext.render.Transformation
  type () in org.sbml.jsbml.ext.spatial.AdvectionCoefficient
  type () in org.sbml.jsbml.ext.spatial.DiffusionCoefficient
  type () in org.sbml.jsbml.ext.spatial.GeometryDefinition
  type () in org.sbml.jsbml.ext.spatial.SampledFieldGeometry
  type () in org.sbml.jsbml.util.ValuePair
history

I A B C D E F G H K L M N O P Q R S T U V W X Y Z TOP
IdManager
IFormulaParser
Image
initDefaults (int, int, boolean)
interpolation
~~interpolationType~~
isActive
  type () in org.sbml.jsbml.ext.spatial.GeometryDefinition
in org.sbml.jsbml.ext.spatial.SpatialConstants
isAssociation (int)
isDissociation (int)
~~isIdMandatory~~ ()
isPackageEnabledOrDisabled (String)
isProcess (int)
isRequired ()
isSetBoundaryMaximum ()
isSetBoundaryMinimum ()
isSetComplementA ()
isSetComplementB ()
~~isSetComponentType~~ ()
isSetCompression ()
isSetCoordinate ()
~~isSetCoordinateIndex~~ ()
isSetCoordinateReference1 ()
isSetCoordinateReference2 ()
isSetData ()
isSetDiffusionKind ()
~~isSetDomain~~ ()
isSetDomainType ()
~~isSetEncoding~~ ()
~~isSetImageData~~ ()
isSetInterpolation ()
~~isSetInterpolationType~~ ()
isSetIsActive ()
isSetListOfQualitativeSpecies ()
isSetListOfSampledFields ()
isSetListOfTransitions ()
~~isSetMaximum~~ ()
~~isSetMinimum~~ ()
~~isSetSpatialDimension~~ ()
isSetSpatialDimensions ()
isSetSpatialRef ()
isSetType ()
isSetVariable ()
isVector ()

K A B C D E F G H I L M N O P Q R S T U V W X Y Z TOP
KineticLaw

L A B C D E F G H I K M N O P Q R S T U V W X Y Z TOP
lambdaBody (List<ASTNode>)
LaTeXCompiler
Layout
LayoutConstants
~~LayoutExtentionTest~~
LayoutModelPlugin
~~LayoutTest~~
LEFT_BRACES
in org.sbml.jsbml.text.parser.FormulaParserConstants
in org.sbml.jsbml.text.parser.FormulaParserLL3Constants
LEFT_BRACKET
in org.sbml.jsbml.text.parser.FormulaParserConstants
in org.sbml.jsbml.text.parser.FormulaParserLL3Constants
LinearGradient
LineEnding
LineSegment
ListOfMemberConstraint
ListOfObjectives
ListOfWithName
  org.sbml.jsbml.util
  ~~ListOfWithName~~ (ListOfWithName<T>) constructor
  ListOfWithName (ListOfWithName<SBase>) constructor
LocalParameter
LocalRenderInformation
LocalStyle
  org.sbml.jsbml.ext.render
  ~~LocalStyle~~ (int, int, Group) constructor
  ~~LocalStyle~~ (String, int, int, Group) constructor
  ~~LocalStyle~~ (Group) constructor
  LocalStyle (int, int, RenderGroup) constructor
  LocalStyle (String, int, int, RenderGroup) constructor
  LocalStyle (RenderGroup) constructor
logicalOperation (String, List<ASTNode>)

M A B C D E F G H I K L N O P Q R S T U V W X Y Z TOP
main (String[])
MathMLCompiler
Member
MemberConstraint
metaIds ()
MixedGeometry
Model
ModelBuilder
ModelDefinition

N A B C D E F G H I K L M O P Q R S T U V W X Y Z TOP
nonRDFAnnotation
numBvars
numPiece

O A B C D E F G H I K L M N P Q R S T U V W X Y Z TOP
Objective
of (Comparable<? super L>, Comparable<? super V>)
OrdinalMapping
org.sbml.jsbml
org.sbml.jsbml.ext
org.sbml.jsbml.ext.arrays
org.sbml.jsbml.ext.arrays.compiler
org.sbml.jsbml.ext.arrays.flattening
org.sbml.jsbml.ext.arrays.test
org.sbml.jsbml.ext.arrays.util
org.sbml.jsbml.ext.arrays.validator
org.sbml.jsbml.ext.arrays.validator.constraints
org.sbml.jsbml.ext.comp
org.sbml.jsbml.ext.fbc
org.sbml.jsbml.ext.fbc.test
org.sbml.jsbml.ext.groups
org.sbml.jsbml.ext.groups.test
org.sbml.jsbml.ext.layout
org.sbml.jsbml.ext.layout.test
org.sbml.jsbml.ext.qual
org.sbml.jsbml.ext.qual.test
org.sbml.jsbml.ext.render
org.sbml.jsbml.ext.render.test
org.sbml.jsbml.ext.spatial
org.sbml.jsbml.math.test
org.sbml.jsbml.test.sbml
org.sbml.jsbml.text.parser
org.sbml.jsbml.util
org.sbml.jsbml.util.compilers
org.sbml.jsbml.xml
org.sbml.jsbml.xml.parsers
org.sbml.jsbml.xml.test
~~org.sbml.jsbml.xml.test.data.fbc~~

P A B C D E F G H I K L M N O Q R S T U V W X Y Z TOP
Pair
ParameterType
ParametricObject
ParametricObject.PolygonKind
parse ()
ParseException
  org.sbml.jsbml.text.parser
  ParseException (Throwable) constructor
parseFormula (String, IFormulaParser)
ParserManager
Point
Port
~~Position~~
~~PROPERTY_UNDEFINED_EXCEPTION_MSG~~
PROPERTY_UNDEFINED_EXCEPTION_MSG_SBASE
PROPERTY_UNDEFINED_EXCEPTION_MSG_TREE_NODE
PropertyUndefinedError
  org.sbml.jsbml
  PropertyUndefinedError (String, TreeNode) constructor

Q A B C D E F G H I K L M N O P R S T U V W X Y Z TOP
QualitativeModel
  org.sbml.jsbml.ext.qual
  ~~QualitativeModel~~ (QualitativeModel) constructor
  QualitativeModel (QualModelPlugin) constructor
  QualitativeModel (Model) constructor
QualModelPlugin

R A B C D E F G H I K L M N O P Q S T U V W X Y Z TOP
ReactionGlyph
readAttribute
  type (String, String, String) in org.sbml.jsbml.ext.qual.QualitativeModel
  type (String, String, String) in org.sbml.jsbml.ext.spatial.AdvectionCoefficient
  type (String, String, String) in org.sbml.jsbml.ext.spatial.DiffusionCoefficient
  type (String, String, String) in org.sbml.jsbml.ext.spatial.GeometryDefinition
  type (String, String, String) in org.sbml.jsbml.ext.spatial.SampledFieldGeometry
readingParsers
register
  type (SBase) in org.sbml.jsbml.KineticLaw
  type (SBase) in org.sbml.jsbml.Model
  type (SBase) in org.sbml.jsbml.ext.comp.CompModelPlugin
  type (SBase) in org.sbml.jsbml.ext.spatial.SpatialModelPlugin
relation (ASTNode, String, ASTNode)
removeAdjacentDomain (String)
removeAllTreeNodeChangeListeners
  type (boolean) in org.sbml.jsbml.AbstractTreeNode
  type (boolean) in org.sbml.jsbml.util.TreeNodeWithChangeSupport
removeAnalyticVolume (String)
removeBasePoint1 ()
removeBasePoint2 ()
removeCompartmentGlyph
  type (CompartmentGlyph) in org.sbml.jsbml.ext.layout.Layout
  type (int) in org.sbml.jsbml.ext.layout.Layout
  type (String) in org.sbml.jsbml.ext.layout.Layout
removeCoordinateComponent (String)
removeCSGNode (String)
removeCVTerm
  type (CVTerm) in org.sbml.jsbml.AbstractSBase
  type (int) in org.sbml.jsbml.AbstractSBase
  type (CVTerm) in org.sbml.jsbml.Annotation
  type (int) in org.sbml.jsbml.Annotation
  type (CVTerm) in org.sbml.jsbml.SBase
  type (int) in org.sbml.jsbml.SBase
in org.sbml.jsbml.util.TreeNodeChangeEvent
removeDomain (String)
removeDomainType (String)
removeEnd ()
removeEventAssignment (EventAssignment)
removeFromParent
  type () in org.sbml.jsbml.CVTerm
  type () in org.sbml.jsbml.ext.AbstractSBasePlugin
  type () in org.sbml.jsbml.ext.comp.ReplacedBy
removeGeneralGlyph
  type (int) in org.sbml.jsbml.ext.layout.GeneralGlyph
  type (GraphicalObject) in org.sbml.jsbml.ext.layout.GeneralGlyph
  type (int) in org.sbml.jsbml.ext.layout.Layout
  type (String) in org.sbml.jsbml.ext.layout.Layout
  type (GeneralGlyph) in org.sbml.jsbml.ext.layout.Layout
removeGeometryDefinition (String)
removeQualitativeSpecies (QualitativeSpecies)
removeReactionGlyph
  type (ReactionGlyph) in org.sbml.jsbml.ext.layout.Layout
  type (int) in org.sbml.jsbml.ext.layout.Layout
  type (String) in org.sbml.jsbml.ext.layout.Layout
removeResource (int)
removeSampledField
  type (SampledField) in org.sbml.jsbml.ext.spatial.Geometry
  type (int) in org.sbml.jsbml.ext.spatial.Geometry
  type (String) in org.sbml.jsbml.ext.spatial.Geometry
removeSampledVolume (String)
removeSingletons ()
removeSpeciesGlyph
  type (SpeciesGlyph) in org.sbml.jsbml.ext.layout.Layout
  type (int) in org.sbml.jsbml.ext.layout.Layout
  type (String) in org.sbml.jsbml.ext.layout.Layout
removeStart ()
removeTextGlyph
  type (TextGlyph) in org.sbml.jsbml.ext.layout.Layout
  type (int) in org.sbml.jsbml.ext.layout.Layout
  type (String) in org.sbml.jsbml.ext.layout.Layout
removeTransition (Transition)
RenderCurve
RenderGroup
RenderInformationBase
RenderParser
~~RenderWriteTest~~
ReplacedBy
RIGHT_BRACES
in org.sbml.jsbml.text.parser.FormulaParserConstants
in org.sbml.jsbml.text.parser.FormulaParserLL3Constants
RIGHT_BRACKET
in org.sbml.jsbml.text.parser.FormulaParserConstants
in org.sbml.jsbml.text.parser.FormulaParserLL3Constants

S A B C D E F G H I K L M N O P Q R T U V W X Y Z TOP
SampledField
  org.sbml.jsbml.ext.spatial
  SampledField (int, int) constructor
  SampledField (String, int, int) constructor
SampledField.CompressionKind
SampledField.DataKind
SampledField.InterpolationKind
SampledFieldGeometry
SBase
SBMLDocument
SBO
SBO.Term
SBO.Triple
selector (Object[])
setAreaUnits (Kind)
setBoundaryMaximum (Boundary)
setBoundaryMinimum (Boundary)
setCaseSensitive (boolean)
setComplementA (String)
setComplementB (String)
~~setComponentType~~ (String)
setCompression (CompressionKind)
setCoordinate (CoordinateKind)
~~setCoordinateIndex~~ (int)
setCoordinateReference1 (CoordinateKind)
setCoordinateReference2 (CoordinateKind)
setCoordinateSystem (GeometryKind)
setData
  type (String) in org.sbml.jsbml.ext.spatial.SampledField
  type (XMLNode) in org.sbml.jsbml.ext.spatial.SampledField
setDataType (DataKind)
setDiffusionKind (DiffusionKind)
~~setDomain~~ (String)
setDomainType (String)
~~setEncoding~~ (String)
setExtendedSBase (SBase)
setExtentUnits (Kind)
setFunctionType (FunctionKind)
setGroup
  type (RenderGroup) in org.sbml.jsbml.ext.render.LineEnding
  type (RenderGroup) in org.sbml.jsbml.ext.render.Style
setId (String)
~~setImageData~~ (ImageData)
setInterpolation (InterpolationKind)
~~setInterpolationType~~ (String)
setIsActive (boolean)
setLengthUnits (Kind)
setListOfQualitativeSpecies (ListOf<QualitativeSpecies>)
setListOfReferenceGlyph (ListOf<ReferenceGlyph>)
setListOfSampledFields (ListOf<SampledField>)
~~setListOfSpeciesReferencesGlyph~~ (ListOf<ReferenceGlyph>)
setListOfTransitions (ListOf<Transition>)
~~setMaximum~~ (Boundary)
~~setMinimum~~ (Boundary)
setNotesKeyToUserObject (String)
setOperationType (SetOperation)
setParent (TreeNode)
setPolygonType (PolygonKind)
setPrimitiveType (PrimitiveKind)
setSampledField (String)
~~setSpatialDimension~~ (int)
setSpatialDimensions (int)
setStrokeWidth (Double)
setSubstanceUnits (Kind)
setTimeUnits (Kind)
setType
  type (BoundaryKind) in org.sbml.jsbml.ext.spatial.BoundaryCondition
  type (CoordinateKind) in org.sbml.jsbml.ext.spatial.CoordinateComponent
setUp ()
setVariable (String)
setVolumeUnits (Kind)
~~SLPITTER~~
SpatialConstants
~~spatialDimension~~
spatialDimensions
SpatialModelPlugin
SpatialSpeciesPlugin
SpatialTest
Species
SpeciesReference
SPLITTER
~~Start~~
stringToType
strokeWidth
Style
  org.sbml.jsbml.ext.render
  ~~Style~~ (int, int, Group) constructor
  ~~Style~~ (String, int, int, Group) constructor
  ~~Style~~ (Group) constructor
  Style (int, int, RenderGroup) constructor
  Style (String, int, int, RenderGroup) constructor
  Style (RenderGroup) constructor

T A B C D E F G H I K L M N O P Q R S U V W X Y Z TOP
test_CVTerm_removeResources ()
TestCVTerms
~~TestL3groups~~
~~TestL3Layout~~
TestSBase
~~TestSpeciesReferenceGlyphCurve~~
TextGlyph
toFormula (FormulaCompiler)
toString
  type () in org.sbml.jsbml.SpeciesReference
  type () in org.sbml.jsbml.ext.layout.LineSegment
  type () in org.sbml.jsbml.ext.render.LocalStyle
  type () in org.sbml.jsbml.util.ValuePair
Transformation
  org.sbml.jsbml.ext.render
  Transformation (int, int) constructor
Transformation2D
  org.sbml.jsbml.ext.render
  Transformation2D (int, int) constructor
TreeNodeChangeEvent
TreeNodeWithChangeSupport

U A B C D E F G H I K L M N O P Q R S T V W X Y Z TOP
Unit
UnitDefinition
UnitsCompiler
unregister
  type ~~(SBase)~~ in org.sbml.jsbml.AbstractSBase
  type (SBase) in org.sbml.jsbml.KineticLaw
  type (SBase) in org.sbml.jsbml.Model
  type ~~(SBase)~~ in org.sbml.jsbml.SBase
  type (SBase) in org.sbml.jsbml.ext.comp.CompModelPlugin
  type (SBase) in org.sbml.jsbml.ext.spatial.SpatialModelPlugin
unregisterChild
  type (SBase) in org.sbml.jsbml.AbstractSBase
  type (SBase) in org.sbml.jsbml.SBase
unsetBoundaryMaximum ()
unsetBoundaryMinimum ()
unsetComplementA ()
unsetComplementB ()
~~unsetComponentType~~ ()
unsetCompression ()
unsetCoordinate ()
~~unsetCoordinateIndex~~ ()
unsetCoordinateReference1 ()
unsetCoordinateReference2 ()
unsetData ()
unsetDiffusionKind ()
~~unsetEncoding~~ ()
unsetGraphicalObject ()
~~unsetImageData~~ ()
unsetInterpolation ()
~~unsetInterpolationType~~ ()
unsetIsActive ()
unsetListOfQualitativeSpecies ()
unsetListOfSampledFields ()
unsetListOfSpeciesReferencesGlyph ()
unsetListOfTransitions ()
~~unsetMaximum~~ ()
~~unsetMinimum~~ ()
unsetType ()
userObject

V A B C D E F G H I K L M N O P Q R S T U W X Y Z TOP
ValuePair
valuePairOf (Comparable<? super L>, Comparable<? super V>)
vector
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.ASTNodeCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FindUnitsCompiler
  type (Object[]) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.FormulaCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.LaTeXCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.MathMLCompiler
  type (List<ASTNode>) in org.sbml.jsbml.util.compilers.UnitsCompiler

W A B C D E F G H I K L M N O P Q R S T U V X Y Z TOP
writeXMLAttributes
  type () in org.sbml.jsbml.ext.qual.QualitativeModel
  type () in org.sbml.jsbml.ext.spatial.AdvectionCoefficient
  type () in org.sbml.jsbml.ext.spatial.DiffusionCoefficient
  type () in org.sbml.jsbml.ext.spatial.GeometryDefinition
  type () in org.sbml.jsbml.ext.spatial.SampledFieldGeometry

X A B C D E F G H I K L M N O P Q R S T U V W Y Z TOP
x ()
XMLNode

Y A B C D E F G H I K L M N O P Q R S T U V W X Z TOP
y ()

Z A B C D E F G H I K L M N O P Q R S T U V W X Y TOP
z ()