- s -

saveReferencedElement() : libsbml.Deletion , libsbml.Port , libsbml.Replacing , libsbml.SBaseRef
SBMLReader() : SBMLReader
SBMLWriter() : SBMLWriter
setAbsoluteValue() : libsbml.RelAbsVector
setActiveObjective() : libsbml.ListOfObjectives
setActiveObjectiveId() : libsbml.FbcModelPlugin
setAlpha() : libsbml.ColorDefinition
setAnnotation() : libsbml.Model , libsbml.SBase , libsbml.SpeciesReference
setAreaUnits() : libsbml.Model
setAssociatedSpecies() : libsbml.GeneProduct
setAssociation() : libsbml.GeneAssociation , libsbml.GeneProductAssociation
setAttributes() : libsbml.XMLToken
setAutoIndent() : libsbml.XMLOutputStream
setBackgroundColor() : libsbml.DefaultValues , libsbml.RenderInformationBase
setBasePoint1() : libsbml.CubicBezier , libsbml.RenderCubicBezier
setBasePoint1_x() : libsbml.RenderCubicBezier
setBasePoint1_X() : libsbml.RenderCubicBezier
setBasePoint1_Y() : libsbml.RenderCubicBezier
setBasePoint1_y() : libsbml.RenderCubicBezier
setBasePoint1_z() : libsbml.RenderCubicBezier
setBasePoint1_Z() : libsbml.RenderCubicBezier
setBasePoint2() : libsbml.CubicBezier , libsbml.RenderCubicBezier
setBasePoint2_x() : libsbml.RenderCubicBezier
setBasePoint2_X() : libsbml.RenderCubicBezier
setBasePoint2_Y() : libsbml.RenderCubicBezier
setBasePoint2_y() : libsbml.RenderCubicBezier
setBasePoint2_z() : libsbml.RenderCubicBezier
setBasePoint2_Z() : libsbml.RenderCubicBezier
setBindingSite1() : libsbml.InSpeciesTypeBond
setBindingSite2() : libsbml.InSpeciesTypeBond
setBindingStatus() : libsbml.OutwardBindingSite
setBiologicalQualifierType() : libsbml.CVTerm
setBlue() : libsbml.ColorDefinition
setBoolValue() : libsbml.ConversionOption , libsbml.ConversionProperties
setBoundaryCondition() : libsbml.Species
setBoundingBox() : libsbml.GraphicalObject , libsbml.LineEnding
setBounds() : libsbml.Dimensions
setCenter() : libsbml.RadialGradient
setCenter2D() : libsbml.Ellipse
setCenter3D() : libsbml.Ellipse
setCharacter() : libsbml.ASTNode
setCharacters() : libsbml.XMLToken
setCharge() : libsbml.FbcSpeciesPlugin , libsbml.Species
setChemicalFormula() : libsbml.FbcSpeciesPlugin
setClass() : libsbml.ASTNode
setCoefficient() : libsbml.FluxObjective
setColorValue() : libsbml.ColorDefinition
setColumn() : libsbml.XMLError
setComparisonCaseSensitivity() : libsbml.L3ParserSettings
setCompartment() : libsbml.CompartmentReference , libsbml.MultiSpeciesType , libsbml.QualitativeSpecies , libsbml.Reaction , libsbml.Species
setCompartmentId() : libsbml.CompartmentGlyph
setCompartmentReference() : libsbml.MultiSimpleSpeciesReferencePlugin , libsbml.SpeciesTypeInstance
setCompartmentType() : libsbml.Compartment , libsbml.MultiCompartmentPlugin
setComponent() : libsbml.OutwardBindingSite , libsbml.SpeciesFeature , libsbml.SpeciesTypeComponentIndex , libsbml.SubListOfSpeciesFeatures
setConsistencyChecks() : libsbml.SBMLDocument
setConsistencyChecksForConversion() : libsbml.SBMLDocument
setConstant() : libsbml.Compartment , libsbml.Parameter , libsbml.QualitativeSpecies , libsbml.Species , libsbml.SpeciesReference
setConversionFactor() : libsbml.Model , libsbml.ReplacedElement , libsbml.Species
setCoordinate() : libsbml.RelAbsVector
setCoordinates() : libsbml.Image , libsbml.LinearGradient , libsbml.RadialGradient , libsbml.Rectangle , libsbml.RenderPoint , libsbml.Text
setCoordinatesAndSize() : libsbml.Rectangle
setCreatedDate() : libsbml.ModelHistory
setCurve() : libsbml.GeneralGlyph , libsbml.ReactionGlyph , libsbml.ReferenceGlyph , libsbml.SpeciesReferenceGlyph
setCX() : libsbml.Ellipse
setCx() : libsbml.RadialGradient
setCY() : libsbml.Ellipse
setCy() : libsbml.RadialGradient
setCZ() : libsbml.Ellipse
setCz() : libsbml.RadialGradient
setDashByIndex() : libsbml.GraphicalPrimitive1D
setDateAsString() : libsbml.Date
setDay() : libsbml.Date
setDefault_z() : libsbml.DefaultValues
setDefaultTerm() : libsbml.ListOfFunctionTerms , libsbml.Transition
setDefaultValues() : libsbml.ListOfGlobalRenderInformation , libsbml.ListOfLocalRenderInformation
setDefinitionURL() : libsbml.ASTNode
setDelay() : libsbml.Event
setDeletion() : libsbml.ReplacedElement
setDenominator() : libsbml.SpeciesReference
setDepth() : libsbml.BoundingBox , libsbml.Dimensions
setDescription() : libsbml.ConversionOption
setDimensions() : libsbml.BoundingBox , libsbml.Image , libsbml.Layout
setDivider() : libsbml.CompModelPlugin
setDocument() : libsbml.SBMLConverter , libsbml.SBMLReactionConverter , libsbml.SBMLValidator
setDoubleValue() : libsbml.ConversionOption , libsbml.ConversionProperties
setElementName() : libsbml.Point
setElementNamespace() : libsbml.SBasePlugin
setEmail() : libsbml.ModelCreator
setEnabled() : libsbml.SBMLExtension , libsbml.SBMLExtensionRegistry
setEnableRotationalMapping() : libsbml.DefaultValues , libsbml.LineEnding
setEnd() : libsbml.LineSegment , libsbml.XMLToken
setEndHead() : libsbml.DefaultValues , libsbml.RenderCurve , libsbml.RenderGroup
setEOF() : libsbml.XMLToken
setErrorLog() : libsbml.XMLInputStream
setExponent() : libsbml.Unit
setExtentConversionFactor() : libsbml.Submodel
setExtentUnits() : libsbml.Model
setFamilyName() : libsbml.ModelCreator
setFast() : libsbml.Reaction
setFill() : libsbml.DefaultValues , libsbml.GraphicalPrimitive2D
setFillColor() : libsbml.GraphicalPrimitive2D
setFillRule() : libsbml.DefaultValues , libsbml.GraphicalPrimitive2D
setFloatValue() : libsbml.ConversionOption , libsbml.ConversionProperties
setFocalPoint() : libsbml.RadialGradient
setFontFamily() : libsbml.DefaultValues , libsbml.RenderGroup , libsbml.Text
setFontSize() : libsbml.DefaultValues , libsbml.RenderGroup , libsbml.Text
setFontStyle() : libsbml.DefaultValues , libsbml.RenderGroup , libsbml.Text
setFontWeight() : libsbml.DefaultValues , libsbml.RenderGroup , libsbml.Text
setFormula() : libsbml.KineticLaw , libsbml.Rule
setFx() : libsbml.RadialGradient
setFy() : libsbml.RadialGradient
setFz() : libsbml.RadialGradient
setGeneProduct() : libsbml.GeneProductRef
setGeneProductAssociation() : libsbml.FbcReactionPlugin
setGivenName() : libsbml.ModelCreator
setGlyphId() : libsbml.ReferenceGlyph
setGraphicalObjectId() : libsbml.TextGlyph
setGreen() : libsbml.ColorDefinition
setGroup() : libsbml.LineEnding , libsbml.Style
setHasOnlySubstanceUnits() : libsbml.Species
setHeight() : libsbml.BoundingBox , libsbml.Dimensions , libsbml.Image , libsbml.Rectangle
setHour() : libsbml.Date
setHoursOffset() : libsbml.Date
setHref() : libsbml.Image
setId() : libsbml.ASTNode , libsbml.BoundingBox , libsbml.ColorDefinition , libsbml.Compartment , libsbml.CompartmentReference , libsbml.CompartmentType , libsbml.Deletion , libsbml.Dimensions , libsbml.Event , libsbml.ExternalModelDefinition , libsbml.FluxBound , libsbml.FluxObjective , libsbml.FunctionDefinition , libsbml.GeneAssociation , libsbml.GeneProduct , libsbml.GeneProductAssociation , libsbml.GeneProductRef , libsbml.GradientBase , libsbml.GraphicalObject , libsbml.GraphicalPrimitive1D , libsbml.Group , libsbml.Image , libsbml.Input , libsbml.InSpeciesTypeBond , libsbml.Layout , libsbml.LineEnding , libsbml.ListOfMembers , libsbml.Member , libsbml.Model , libsbml.MultiSpeciesType , libsbml.Objective , libsbml.Output , libsbml.OutwardBindingSite , libsbml.Parameter , libsbml.Point , libsbml.Port , libsbml.PossibleSpeciesFeatureValue , libsbml.QualitativeSpecies , libsbml.Reaction , libsbml.RenderInformationBase , libsbml.SBase , libsbml.SimpleSpeciesReference , libsbml.Species , libsbml.SpeciesFeature , libsbml.SpeciesFeatureType , libsbml.SpeciesType , libsbml.SpeciesTypeComponentIndex , libsbml.SpeciesTypeComponentMapInProduct , libsbml.SpeciesTypeInstance , libsbml.Style , libsbml.SubListOfSpeciesFeatures , libsbml.Submodel , libsbml.Transition , libsbml.UnitDefinition
setIdAttribute() : libsbml.SBase
setIdentifyingParent() : libsbml.SpeciesTypeComponentIndex
setIdList() : libsbml.LocalStyle
setIdRef() : libsbml.Member , libsbml.SBaseRef
setImageReference() : libsbml.Image
setInitialAmount() : libsbml.Species
setInitialConcentration() : libsbml.Species
setInitialLevel() : libsbml.QualitativeSpecies
setInitialValue() : libsbml.Trigger
setIntValue() : libsbml.ConversionOption , libsbml.ConversionProperties
setIsType() : libsbml.MultiCompartmentPlugin
setKey() : libsbml.ConversionOption
setKind() : libsbml.Group , libsbml.Unit
setKineticLaw() : libsbml.Reaction
setL1TypeCode() : libsbml.Rule
setLabel() : libsbml.GeneProduct
setLengthUnits() : libsbml.Model
setLevelAndVersion() : libsbml.SBMLDocument
setLibraryName() : libsbml.XMLOutputStream
setLibraryVersion() : libsbml.XMLOutputStream
setLine() : libsbml.XMLError
setLinearGradient_x1() : libsbml.DefaultValues
setLinearGradient_x2() : libsbml.DefaultValues
setLinearGradient_y1() : libsbml.DefaultValues
setLinearGradient_y2() : libsbml.DefaultValues
setLinearGradient_z1() : libsbml.DefaultValues
setLinearGradient_z2() : libsbml.DefaultValues
setLocationURI() : libsbml.SBMLDocument
setLowerFluxBound() : libsbml.FbcReactionPlugin
setMajorVersion() : libsbml.ListOfGlobalRenderInformation , libsbml.ListOfLocalRenderInformation
setMath() : libsbml.Constraint , libsbml.Delay , libsbml.EventAssignment , libsbml.FunctionDefinition , libsbml.FunctionTerm , libsbml.InitialAssignment , libsbml.KineticLaw , libsbml.Priority , libsbml.Rule , libsbml.StoichiometryMath , libsbml.Trigger
setMatrix() : libsbml.Transformation , libsbml.Transformation2D
setMatrix2D() : libsbml.Transformation2D
setMaxLevel() : libsbml.QualitativeSpecies
setMd5() : libsbml.ExternalModelDefinition
setMessage() : libsbml.Constraint
setMetaId() : libsbml.SBase
setMetaIdRef() : libsbml.GraphicalObject , libsbml.Member , libsbml.SBaseRef
setMinorVersion() : libsbml.ListOfGlobalRenderInformation , libsbml.ListOfLocalRenderInformation
setMinute() : libsbml.Date
setMinutesOffset() : libsbml.Date
setModel() : libsbml.L3ParserSettings , libsbml.SBMLDocument
setModelHistory() : libsbml.SBase
setModelQualifierType() : libsbml.CVTerm
setModelRef() : libsbml.ExternalModelDefinition , libsbml.Submodel
setModifiedDate() : libsbml.ModelHistory
setMonth() : libsbml.Date
setMultiplier() : libsbml.Unit
setName() : libsbml.ASTNode , libsbml.ColorDefinition , libsbml.Compartment , libsbml.CompartmentReference , libsbml.CompartmentType , libsbml.Deletion , libsbml.Event , libsbml.ExternalModelDefinition , libsbml.FluxBound , libsbml.FluxObjective , libsbml.FunctionDefinition , libsbml.GeneProduct , libsbml.GeneProductAssociation , libsbml.GeneProductRef , libsbml.GradientBase , libsbml.Group , libsbml.Input , libsbml.InSpeciesTypeBond , libsbml.Layout , libsbml.ListOfMembers , libsbml.Member , libsbml.Model , libsbml.ModelCreator , libsbml.MultiSpeciesType , libsbml.Objective , libsbml.Output , libsbml.OutwardBindingSite , libsbml.Parameter , libsbml.Port , libsbml.PossibleSpeciesFeatureValue , libsbml.QualitativeSpecies , libsbml.Reaction , libsbml.RenderInformationBase , libsbml.SBase , libsbml.SimpleSpeciesReference , libsbml.Species , libsbml.SpeciesFeature , libsbml.SpeciesFeatureType , libsbml.SpeciesType , libsbml.SpeciesTypeComponentIndex , libsbml.SpeciesTypeComponentMapInProduct , libsbml.SpeciesTypeInstance , libsbml.Style , libsbml.SubListOfSpeciesFeatures , libsbml.Submodel , libsbml.Transformation , libsbml.Transition , libsbml.UnitDefinition
setNamespaces() : libsbml.SBase , libsbml.XMLToken
setNotes() : libsbml.SBase
setNumericValue() : libsbml.PossibleSpeciesFeatureValue
setObjectRole() : libsbml.RenderGraphicalObjectPlugin
setOccur() : libsbml.SpeciesFeature , libsbml.SpeciesFeatureType
setOffset() : libsbml.GradientStop , libsbml.Unit
setOffsets() : libsbml.Point , libsbml.RenderPoint
setOperation() : libsbml.FluxBound
setOrder() : libsbml.CompartmentGlyph
setOrganisation() : libsbml.ModelCreator
setOrganization() : libsbml.ModelCreator
setOriginOfTextId() : libsbml.TextGlyph
setOutputLevel() : libsbml.Output
setOutside() : libsbml.Compartment
setPackageRequired() : libsbml.SBMLDocument
setParseAvogadroCsymbol() : libsbml.L3ParserSettings
setParseCollapseMinus() : libsbml.L3ParserSettings
setParseL3v2Functions() : libsbml.L3ParserSettings
setParseLog() : libsbml.L3ParserSettings
setParseModuloL3v2() : libsbml.L3ParserSettings
setParsePackageMath() : libsbml.L3ParserSettings
setParseUnits() : libsbml.L3ParserSettings
setPersistent() : libsbml.Trigger
setPkgRequired() : libsbml.SBMLDocument
setPoint1() : libsbml.LinearGradient
setPoint2() : libsbml.LinearGradient
setPortRef() : libsbml.Port , libsbml.SBaseRef
setPosition() : libsbml.BoundingBox
setPriority() : libsbml.Event
setProductComponent() : libsbml.SpeciesTypeComponentMapInProduct
setProgramName() : libsbml.RenderInformationBase , libsbml.SBMLWriter , SBMLWriter
setProgramVersion() : libsbml.RenderInformationBase , libsbml.SBMLWriter , SBMLWriter
setProperties() : libsbml.SBMLConverter
setQualifierType() : libsbml.CVTerm
setQualitativeSpecies() : libsbml.Input , libsbml.Output
setR() : libsbml.RadialGradient
setRadialGradient_cx() : libsbml.DefaultValues
setRadialGradient_cy() : libsbml.DefaultValues
setRadialGradient_cz() : libsbml.DefaultValues
setRadialGradient_fx() : libsbml.DefaultValues
setRadialGradient_fy() : libsbml.DefaultValues
setRadialGradient_fz() : libsbml.DefaultValues
setRadialGradient_r() : libsbml.DefaultValues
setRadii() : libsbml.Ellipse , libsbml.Rectangle
setRadius() : libsbml.RadialGradient
setRadiusX() : libsbml.Rectangle
setRadiusY() : libsbml.Rectangle
setRatio() : libsbml.Ellipse , libsbml.Rectangle
setReactant() : libsbml.SpeciesTypeComponentMapInProduct
setReactantComponent() : libsbml.SpeciesTypeComponentMapInProduct
setReaction() : libsbml.FluxBound , libsbml.FluxObjective , libsbml.GeneAssociation
setReactionId() : libsbml.ReactionGlyph
setRed() : libsbml.ColorDefinition
setReference() : libsbml.Association
setReferenceId() : libsbml.GeneralGlyph , libsbml.ReferenceGlyph
setReferenceRenderInformation() : libsbml.RenderInformationBase
setReferenceRenderInformationId() : libsbml.RenderInformationBase
setRelation() : libsbml.SubListOfSpeciesFeatures
setRelativeValue() : libsbml.RelAbsVector
setReplacedBy() : libsbml.CompSBasePlugin
setRepresentationType() : libsbml.MultiASTPlugin
setRequired() : libsbml.CompSBMLDocumentPlugin , libsbml.SBMLDocumentPlugin
setResultLevel() : libsbml.DefaultTerm , libsbml.FunctionTerm
setReversible() : libsbml.Reaction
setRGBA() : libsbml.ColorDefinition
setRole() : libsbml.ReferenceGlyph , libsbml.SpeciesReferenceGlyph
setRoleList() : libsbml.Style
setRX() : libsbml.Ellipse , libsbml.Rectangle
setRY() : libsbml.Ellipse , libsbml.Rectangle
setSBaseRef() : libsbml.SBaseRef
setSBMLNamespaces() : libsbml.XMLInputStream , libsbml.XMLOutputStream
setSBOTerm() : libsbml.SBase
setScale() : libsbml.Unit
setSecond() : libsbml.Date
setSeverityOverride() : libsbml.XMLErrorLog
setSign() : libsbml.Input
setSignOffset() : libsbml.Date
setSize() : libsbml.Compartment , libsbml.Rectangle
setSource() : libsbml.ExternalModelDefinition
setSpatialDimensions() : libsbml.Compartment
setSpatialSizeUnits() : libsbml.Species
setSpecies() : libsbml.SimpleSpeciesReference
setSpeciesFeatureType() : libsbml.SpeciesFeature
setSpeciesGlyphId() : libsbml.SpeciesReferenceGlyph
setSpeciesId() : libsbml.SpeciesGlyph
setSpeciesReference() : libsbml.MultiASTPlugin
setSpeciesReferenceId() : libsbml.SpeciesReferenceGlyph
setSpeciesType() : libsbml.MultiSpeciesPlugin , libsbml.Species , libsbml.SpeciesTypeInstance
setSpreadMethod() : libsbml.DefaultValues , libsbml.GradientBase
setStart() : libsbml.LineSegment
setStartHead() : libsbml.DefaultValues , libsbml.RenderCurve , libsbml.RenderGroup
setStoichiometry() : libsbml.SpeciesReference
setStoichiometryMath() : libsbml.SpeciesReference
setStopColor() : libsbml.GradientStop
setStrict() : libsbml.FbcModelPlugin
setStroke() : libsbml.DefaultValues , libsbml.GraphicalPrimitive1D
setStrokeDashArray() : libsbml.GraphicalPrimitive1D
setStrokeWidth() : libsbml.DefaultValues , libsbml.GraphicalPrimitive1D
setStyle() : libsbml.ASTNode
setSubmodelRef() : libsbml.Replacing
setSubstanceConversionFactor() : libsbml.Submodel
setSubstanceUnits() : libsbml.KineticLaw , libsbml.Model , libsbml.Species
setSymbol() : libsbml.InitialAssignment
setTargetNamespaces() : libsbml.ConversionProperties
setText() : libsbml.Text , libsbml.TextGlyph
setTextAnchor() : libsbml.DefaultValues , libsbml.RenderGroup , libsbml.Text
setThresholdLevel() : libsbml.Input
setTimeConversionFactor() : libsbml.Submodel
setTimeUnits() : libsbml.Event , libsbml.KineticLaw , libsbml.Model
setTransform() : libsbml.Transformation
setTransformer() : libsbml.CompModelPlugin
setTransitionEffect() : libsbml.Input , libsbml.Output
setTrigger() : libsbml.Event
setTriple() : libsbml.XMLToken
setType() : libsbml.Association , libsbml.ASTNode , libsbml.ConversionOption , libsbml.Objective
setTypeList() : libsbml.Style
setUnitRef() : libsbml.SBaseRef
setUnits() : libsbml.ASTNode , libsbml.Compartment , libsbml.Parameter , libsbml.Rule , libsbml.Species
setUpperFluxBound() : libsbml.FbcReactionPlugin
setUseValuesFromTriggerTime() : libsbml.Event
setValue() : libsbml.ASTNode , libsbml.ColorDefinition , libsbml.ConversionOption , libsbml.ConversionProperties , libsbml.FluxBound , libsbml.Parameter , libsbml.SpeciesFeatureValue
setVariable() : libsbml.EventAssignment , libsbml.Rule
setVersion() : libsbml.ListOfGlobalRenderInformation , libsbml.ListOfLocalRenderInformation
setVolume() : libsbml.Compartment
setVolumeUnits() : libsbml.Model
setVTextAnchor() : libsbml.DefaultValues , libsbml.RenderGroup
setVtextAnchor() : libsbml.RenderGroup
setVTextAnchor() : libsbml.Text
setWidth() : libsbml.BoundingBox , libsbml.Dimensions , libsbml.Image , libsbml.Rectangle
setWriteComment() : libsbml.XMLOutputStream
setWriteTimestamp() : libsbml.XMLOutputStream
setX() : libsbml.BoundingBox , libsbml.Image , libsbml.Point , libsbml.Rectangle , libsbml.RenderPoint , libsbml.Text
setX1() : libsbml.LinearGradient
setX2() : libsbml.LinearGradient
setXOffset() : libsbml.Point
setY() : libsbml.BoundingBox , libsbml.Image , libsbml.Point , libsbml.Rectangle , libsbml.RenderPoint , libsbml.Text
setY1() : libsbml.LinearGradient
setY2() : libsbml.LinearGradient
setYear() : libsbml.Date
setYOffset() : libsbml.Point
setZ() : libsbml.BoundingBox , libsbml.Image , libsbml.Point , libsbml.Rectangle , libsbml.RenderPoint , libsbml.Text
setZ1() : libsbml.LinearGradient
setZ2() : libsbml.LinearGradient
setZOffset() : libsbml.Point
simplify() : libsbml.UnitDefinition
size() : libsbml.ListOf , libsbml.ListOfSpeciesFeatures , libsbml.StringSet
skipPastEnd() : libsbml.XMLInputStream
skipText() : libsbml.XMLInputStream
startElement() : libsbml.XMLOutputStream
startEndElement() : libsbml.XMLOutputStream
str() : libsbml.ostringstream
straighten() : libsbml.CubicBezier
stringToInt() : libsbml.SBO
swapChildren() : libsbml.ASTNode